Immunology Flashcards

1
Q

What is the importance of immunology for human health?

A

immunology = study of the mechanisms that are used to defend our bodies against invasion by other organisms.

Failure of “normal function” of the immune system can be lethal and so knowledge of the workings of the immune system and how human health can be improved to prevent infection is highly important.

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2
Q

What are the two main types of the immune response?

A

Innate = system which works rapidly (starts in minutes/hours) after detecting a foreign antigen.

Acquired = takes days/ weeks to become effective, required the expansion of antibodies which are highly specific to the foreign antigen.

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3
Q

What is an innate immune response?

A

Roles:

  • destroys invading nucleic acids
  • activates interleukins (which activate inflammatory pathways)
  • induces type 1 interferons

Allows time and initiates acquired immune response

Makes use of; neutrophils, macrophages, eosinophils, basophils, dendritic cells, natural killer cells, acute-phase proteins and cytokines (small protein which acts as cell signalling molecule- activates or proliferates lymphocytes)

Triggered by PAMPs and DAMPs (pathogen/danger associated molecular patterns)

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4
Q

What is the acquired immune response?

A

Makes use of both T and B lymphocytes along with cytokines and antibodies.

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5
Q

Define antigen

A

A molecule which is recognised and binds to antibodies or T cells; those which induce an immune response are called immunogens.

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6
Q

Define antibody

A

Proteins (immunoglobins) which are produced in response to antigens and bind specifically to that antigen.

Part of the humoral response

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7
Q

What are lymphocytes, and differentiate between B and T lymphocytes?

A

Lymphocytes = a type of WBC which are found in the lymph, expreses a specific antigen receptor to enable recognition of a specific antigen.

B-lymphocytes: produced and developed in the bone marrow

T-lymphocytes: produced in the bone marrow but mature in the thymus glands

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8
Q

What is active immunity?

A

Immunity gained after activating an immune response usually by introducing an antigen

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9
Q

What is passive immunity?

A

Immunity gained without causing an immune response e.g. injecting antibodies or via the placenta

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10
Q

What is the primary immune response?

A

The response made by lymphocytes when first encountering a foreign antigen

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11
Q

What is the secondary immune response?

A

A response made by memory lymphocytes when an antigen is re-encountered

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12
Q

What is clonal selection?

A

Cells (T and B lymphocytes) which have a complementary receptor to the foreign antigen are selected, and proliferated to produce many clones with the same antigen receptor.

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13
Q

How do lymphocytes recognise antigens?

A

B-lymphocytes: the antigen receptor is a surface immunoglobulin so directly binds to the antigen

T-lymphocytes: has 2 protein chains (alpha and beta) which make up the T cell antigen receptor (TCR) which binds to processed antigen fragments

(TCR recognises - antigen peptide and HLA)

There is clonal diversity in lymphocytes due to random, genetic recombinations

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14
Q

How does natural selection apply to the immune system?

A

Evolutionary exposure to pathogens has developed the human immune system. However there are many pathogens which are developing methods by which they can block attack by the immune response.

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15
Q

How is the immune system organised?

A

Lymphatic system = drains body fluid from between tissue cells via lymph nodes and so lymphocytes recirculate

antigens taken up by antigen presenting cells (B-lymphocytes, dendritic cells or macrophages) - transported to tissues in the secondary lymphoid organs where T-cells are met.

lymphoid organs = lymphocytes reacting with non lymphoid cells

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16
Q

What are the primary lymphoid organs?

A

Where lymphocytes are producded (sites of lymphopoiesis)

Thymus (t-lymphocytes)

Bone marrow (b-lymphocytes)

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17
Q

What are the secondary lymphoid organs?

A

Where lymphocytes interact with the antigan and other lymphocytes

Spleen

Lymph nodes

MALT = mucosal associated lymphoid tissues

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18
Q

What are the key features of the thymus?

Draw a sketch of the thymus

A

It is a bi-lobed gland, seperatuons via septum

Located below the thyroid gland in the thorax

No change in structure during infection

Two main lobules;

  1. cortex = immature thymocytes (some are selected to become mature)
  2. medulla = mature thymocytes
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19
Q

How does thymic output differ with age?

A

Thymic output decreases with age i.e. fewer new T-lymphocytes are produced.

Mostly memory cells.

Reduced diversity of cells = olgioclonal

TOTAL NUMBER OF T-CELLS IN YOUNG AND OLD PEOPLE IS THE SAME

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20
Q

What are the key features of the lymph node?

Draw a sketch

A

Lymph enters via the afferent vessel (several)

Lymph leaves via a singular efferent vessel

Cortex mainly contains B-cells

Paracortex predominantly contains T-cells

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21
Q

How does the lymph node change when undergoing infection?

A

Germinal centres can be seen under a microscope, due to rapid proliferation of B-cells during an immune response.

Also causes lymph nodes to swell.

Dendritic cells present antigens to the lymph nodes triggering an immune response

Lymphocytes => blood

via high endothelial venules

directed by chemokines; gradient of chemokines direct lymphocytes to the correct position

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22
Q

What are the key features of the spleen?

Draw a sketch

A

2 major tissue types

Red pulp = a general filter for blood

White pulp = lymphoid tissue and the major initiator of responses to blood-borne antigens

The area near the artery is called PALS (periarterial lymphatic sheath) which consists of T-lymphocytes

Next to PALS there are B-cell follicles

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23
Q

What happens to the spleen during an immune response?

A

Germinal centres can be seen

Those lacking a spleen are highly susceptible to infections by encapsulated (polysaccharide) bacteria i.e. stretococcus, klibsiella etc

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24
Q

What are the key features of the Peyer’s patch?

Draw a sketch

A

Small masses of lymphatic tissue found in the ileum of the small intestine - a type of MALT but as it is found in the gut can also be classified as GALT.

Mainly B lympohocytes

M cells = samples antigens from the gut and delivers them to lymphocytes in the Peyer’s patch

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25
How does the structure of the Peyer's patch differ during an immune response?
The germinal centres can be seen during an immune response
26
What are naïve lymphocytes?
Lymphocytes which have not yet encountered an antigen and are constantly circulating the blood and secondary lymphoid organs
27
How do naïve T-lymphocytes enter the lymph node?
T-lymphocytes are in the blood and can enter lymph nodes at the HEV (high endothelial venule) Chemokines are bound to HEV which causes the T-cell to bind weakly to it (due to selectins) Once integrins are present, T-cells bind strongly to ICAM 1 (intracellular adhesion molecule 1) T-cell is immobilised and moves into lymph node
28
How are lymphocytes re-circulated?
Naive lymphocytes circulate from the blood to secondary lymoid organs such as lymph nodes until they die or become activated. Activated = antigen detected, proliferation and differentiate IN THE LYMPHOID TISSUE
29
How are CD (cluster of differentiation) markers used to differentiate between lymphocytes?
B and T lymphocytes can not be differentiated under the microscope as they both have agranular cytoplasm and a large nucleus They can be differentiated due to their cell surface molecules; seperated into clusters using monoclonal antibodies CD markers = internationally recognised, more than 350
30
Comapre the phenotypic characteristics of B and T lymphocytes
B LYMPHOCYTES: * Function = produce antibodies * Expresses CD19 and CD20 * Expresses MHC Class II * Recognises a free, intact antigen in body fluids * Antigen receptor - cell surface antibody T LYMPHOCYTES: * Function = CD4+ secrete cytokines, CD8+ lyse infected cells and secrete cytokines * Expresses CD3, 2/3 CD4 (T helper and regulatory T) and 1/3 CD8 (cytotoxic T) * Only recognise an antigen presented on the surface of another cell via an MHC molecule
31
What are the 4 types of antigen presenting cells?
Dendritic cells= widely spread in skin and mucosal tissue ► T-cells Follicular Dendritic cells= lymph node follicles ► B-cells B-cells= lymphoid tissue ► T-cells Activated macrophages= lymphoid tissue ►T-cells
32
What are the functions of neutrophils?
A polymorphonuclear leukocyte short lived circulates in the blood and migrates into tissues first at site of infection/tissue damage highly phagocytic cells and kills them after
33
How do neutrophils phagocytose a pathogen?
Usually antigen uptake is more effective after opsonisation opsonisation = coating the microorganism with proteins to aid phagocytosis; opsonins bind to both the antigen and phagocytes
34
How do neutrophils kill a pathogen?
Two mechanisms 1. Oxygen-independent * using lysozymes and hydrolytic enzymes 2. Oxygen-dependent * using toxic metabolites e.g. nitric oxide, hydrogen peroxide
35
How do monocytes/macrophages act as phagocytic cells?
monocytes = bloodstream macrophages = tissues Act as signals of infection by releasing cytokines such as interleukins (IL-1, IL-6 and IL-8) Engulf and kill invading organisms
36
Define cytokines
Small secreted proteins which are involved in cell to cell communication. They have low concentrations and act locally on cells. They function by binding to specific cell surface receptors.
37
What are the different types of cytokines?
1. interleukins = between leukocytes 2. interferons = anti-viral effects 3. chemokines = chemotaxis and movement of cells to particular sites 4. growth factors = development of cells in the immune system 5. cytotoxic = can induce cell death e.g. tumor necrosis factor
38
What are the 5 important cytokines which are secreted by macrophages?
1. IL-1 = alarm cytokine (fever) 2. TNF-alpha = alarm cytokine 3. IL-6 = burns/ tissue damage, liver 4. IL-8 = signal for the movement of neutrophils (chemotaxis) 5. IL-12 = directs adaptive immunity and activates natural killer cells
39
Define complement
Complements the activing of a specific antibody A complex series of proteins in serum and tissues which cause an enzyme cascade which leads to: * opsonisation of microorganisms * direct killing of microorganisms * promotion of inflammation * recruitment of leukocytes
40
What does the complement system consist of?
Roughly 30 proteins and glycoproteins - in serum (high conc) Mostly precursors to enzymes which once activated cause a cascade Thus a highly amplified and rapid response occurs
41
How is the complement system activated?
Three ways 1. Classical = intiated by antigen-antibody complexes 2. Alternative = direct activation by pathogen surface 3. Lectin = activation via lectins which bind to carbohydrates only found on pathogens
42
What do complement pathways result in?
The classical, lectin and alternative pathways converge at C3 C3 (a complement component) leads to a common pathway in which the MAC (membrane attack complex) is formed causing cell lysis.
43
Draw a simple diagram of the complement pathway
MBL = mannanose-binding lectin CRP = C-reactive protein
44
How is the complement system controlled?
* Constant changing of components * Dilution of components in biological fluids * Regulatory proteins * circulating; C1-inhibitor, Factor I * membrane bound; CD59, DAF
45
What are the functions of complement?
Microorganisms undergo: 1. lysis 2. opsonization 3. activation of inflammatory response 4. clearance of immune complexes
46
What is the local acute inflammatory response?
Tissue damage \> bacteria enter Recognised by macrophages which are activated, secrete cytokines Affects local vascular permeability Neutrophils move towards site of infection leave circulation 2nd exposure = antibodies present will bind to bacteria (classical pathway activates complement) Or then alternative pathway activates complement Degrades mast cells – releases histamine Lymphocytes and monocytes also move towards site of infection
47
When and how is the systemic acute phase response stimulated?
Activated if the pathogen is not cleared after the local inflammatory response \> systemic respose required Usually after 1-2 days Fever occurs Induced by cytokines e.g. interleukins
48
What proteins are produced as part of the systemic acute phase response?
* C-reactive protein (activates complement, levels may increase 1000X) * Mannose binding lectin (activates complement, opsonin for monocytes) * Complement * Fibrinogen (clotting)
49
What are natural killer (NK) cells?
Lymphocytes which have large granules Cytotoxic- lyse target cells and secrete interferon gamma Expresses activating and inhibiting receptors; determines if NK is activated or not Receptors can binf to antibody-coated cells Used in defence against tumour cells and viral infection
50
How do NK cells recognise pathogens?
Activating receptors bind to stress-induced molecules and thus the cell is targeted to kill
51
Draw and explain the major components of an immunoglobulin
Fab = antigen binding site (equal amount of light and heavy chains; hinge region provides flexibility to bind to antigens; binding comes from non-covalent interactions) Fc= constant region (stays the same as doesn't bind to antigens; can change conformation when bound to an antigen to perform effector functions such as activating complement)
52
What are the properties of the antigen-binding site?
Where antigen binds to antibody Surface is predominantly flat with 3 hypervariable regions forming the complementarity determining regions (CDRs); light chain also has a variable region Non-covalent forces involved: * hydrogen bonds * ionic bonds * hydrophobic interactions * van der Waals interactions Individually weak but collectively create a strong force
53
Define antibody affinity
A measure of the strength of binding between a SINGLE binding site of an antibody and its epitope on the antigen
54
Define antibody avidity
The overall strength of binding between an antibody with MULTIPLE binding sites and antigen with MULTIPLE epitopes
55
What are the major classes of antibody in humans?
Ig: * A * D * E * M * G All have either 2 kappa or 2 lambda light chains; differences arise in the heavy chain
56
What is the function of IgG?
Heavy chain: gamma with 3 domains Most abundant antibody and has 4 different subclasses (differ in hinge region and effector function) In general IgG = neutralises toxins and viruses Actively transported across the placenta = long half life so provides a baby with approx 3 month protection Classical complement is activated by IgG1 and IgG3
57
What is the function of IgA?
Alpha heavy chain with 3 domains Has 2 subclasses and also second most abundant Can exist as monomers (blood- IgA1) and as dimers (secretions- IgA2) Dimer of IgA = with a joining and secretory component (major secretory immunoglobulin) Provides protection of mucosal surfaces from bacteria, viruses and protozoa
58
What is the function of IgM?
mu heavy chain with 4 domains A pentameric molecule = 5 monomers joined by J chain (10 antigen binding sites) Usually found in the blood First Ig synthesised after exposure to an antigen 10 antigen binding sites allows for strong binding and agglutination Can also activate complement
59
What is the function of IgE?
E heavy chain with 4 domains Very low concentration Produced in response to parasitic infection and allergic reactions Binds to mast cells (cross-links cause histamine release) and basophils
60
What is the function of IgD?
Delta heavy chain with 3 domains Low serum concentration Expressed in early B-cell development (on surface) Involved in B-cell development and activation
61
Where do B-lymphocytes originate from?
B-lymphocytes originate from stem cells in the bone marrow where is also where they mature - in the absence of antigen They can migrate into cirulation (blood and lymph) and also into lymphoid tissue Immature B-cells express IgM; mature B-cells express IgD Mature B-lymphocytes are for a specific antigen, brought about by the B-cell receptor (BCR) for antigen
62
How is diversity created in immunoglobulins?
Diversity =\> rearrangement of the immunoglobulin gene During B-cell maturation gene segments for the BCR chain are rearranged and brought together Light Chain = V and J segments Heavy Chain = V, D and J segments V=variable, D=diversity and J=joining
63
What occurs during gene rearrangement?
The principle for gene rearrangement remains the same for both the heavy chain and the light chain 1. Germline DNA rearragned * only some V/D/J components used 2. Forms B-cell DNA 3. Transcripted into pre-mRNA 4. Alternative splicing to produce mature mRNA * some V/D/J components are removed along with introns 5. Translation into polypeptide (heavy/light)
64
What pathways can a B-cell undergo to be called activated?
1. Plasma cell = producing antibodies 2. Memory cell = prepares for future infections 3. Enters somatic hypermutation and affinity maturation = improves quality of antibody
65
How does thymus dependent B-cell activation to plasma cells occur?
* via a T-helper cell * produces all forms of Ig- protein based antigens 1. BCR recognises antigen 2. Antigen is internalised and degraded into peptides 3. Peptides associate with "self" MHC class II and is expressed at the surface 4. Complex recognised by CD4+ T helper cell 5. T helper cells secrete lymphokines 6. Causes B-cell to undergo mass cloning with identical BCRs
66
How does thymus independent B-cell activation to plasma cells occur?
* Recognised by microbial constituents * Ony produces IgM 1. Polysaccharide has repeating units 2. Binds to many BCR on same cell (cross-linking) 3. Secondary signal from the microbe is needed e.g. LPS
67
What is Ig class switching?
T-cells can release cytokines which can cause Ig's to switch class via a different combination of V, D and J gene segments resulting in different constant region
68
How do B-cells differentiate into memory cells?
The B-cell must be intitally activated via thymus dependency. Memory follicular T helper cells detect the activated B-cell; there is binding between the TCR and MHC class II peptide Enters germinal centre where differentiation into a memory cell can occur
69
What is somatic hypermutaion and affinity maturation?
OCCURS IN THE GERMINAL CENTRE TO IMPROVE A SECONDARY RESPONSE Somatic hypermutation = production of centroblasts- class switching may occur here Affinity maturation = activated B-cells produce antibodies with an increased affinity; repeated exposure will result in increased affinities
70
How does the antibody production differ in the primary and secondary immune response?
PRIMARY RESPONSE Slower as longer time taken for antibody production; mainly consists of IgM SECONDARY RESPONSE Faster and greater reponse due to memory B-cells; more IgG rather than IgM
71
What are T-lymphocytes?
Detects and destroys intracellular pathogens using the TCR (T-cell receptor). The TCR only recognises processed antigens which are presented by MHC moleucles (a small peptide fragment of the pathogen along with self MHC)
72
What are the types of T-cells?
1. CD8+ * cytotoxic T-lymphocytes = kill target cells * recognises peptide antigen presented by MHC I * secrete cytokines * may induce apoptosis in target cell 2. CD4+ * T-helper cells * recognises peptide antigen presented by MHC II * secretion of cytokines to help activate macrophages and amplify B-cell and CD8+ cell responses
73
Where do T-cells orignate and develop?
T-cells origniate at the bone marrow. However they then develop in the thymus. Move from the outer cortex to inner medulla as they develop. TCR formation = mature T-cell 1. Germline DNA rearranged (gene segment rearrangement) 2. Cells express TCR and both CD4 and CD8 3. Cells undergo selection; only those chosen if TCR recognises self MHC (not too strongly) 4. Mature cells express TCR and either CD4 (Th1/2) or CD8
74
What are MHC molecules?
MHC = Major Histocompatibility Complex MHC molecules are displayed on the cell surface and are markers of "self" which indicate the "health" of cells and can be recognised by T-cells.
75
What are the two major calsses of MHC?
MHC class I = classical transplantation antigens and are expressed by all cells (at different levels) MHC class II = regulatory, control the ability to mount to immune responses, only expressed by APCs (antigen presenting cells; dendritic cells, macrophages and B-lymphocytes)
76
Outline the structure of a MHC class I molecule
77
Outline the structure of MHC class II molecules
78
How is specificity maintained in MHC molecules?
A range of peptides must be able to bind to MHC but a degree of specificity must also be maintained. Achieved via specific binding pockets only allowing side chains with the correct amino acid to bind (anchor residue)
79
What are HLA?
HLA = Human Leukocyte Antigen (human MHC) Class I: HLA a/b/c Class II: HLA dp/dq/dr HLA genes are highly polymorphic (large number of alleles) expression is co-dominant. Inherit 2 MHC haplotypes (group of MHC alleles tightly linked on one chromosome) determines immune responsiveness. Diversity at the population level not within an individual
80
What is an endogenous antigen?
An antigen synthesised in the cytoplasm; presented by MHC class I to CD8 T-cells
81
What is an exogenous antigen?
An antigen captured from the external environment (usually a pathogen) which is presented by MHC class II to CD4 T-cells
82
How are endogenous antigens presented by MHC class I?
Protein sythesised in cytoplasm Proteasome cleaves proteins to form peptides Peptides enter ER via TAP (transporter associated with antigen processing) Class 1 MHC molecule folds with the help chaperone proteins Binding of heavy chain, peptide and beta 2 microglobulin The complex then moves through the Golgi complex to the cell surface
83
How are exogenous antigens presented by MHC class II?
Class II MHC molecule in RER binds to invariant chain Movement through Golgi complex; invariant chain digested to only leave a small part CLIP (class II associated invariant chain peptide) Exogenous antigen enters cytoplasm via endocytosis Antigenic peptide exchanged with CLIP MHC class II molecule and antigenic peptide presented at cell surface
84
What is the difference between how B and T lymphocytes differentiate between antigens
B-lymphocytes = directly recognises an intact, extracellular antigen T-lymphocytes = only recognises processed antigens presented by MHC molecules; Class I = CD8+ and Class II = CD4+
85
Why are antigen presenting cells important in the induction of T-lymphocyte responses?
T-cells only mature once they detect and antigen presented via MHC molecules by APCs such as dendritic cells (DC) They must also be co-stimulated CD28 meets with CD80/86 This causes a naive T-cell to become an effector and performs its function Some effector cells can then become memory T-cells When T-cells are in circulation if they present the correct chemokine receptor they can follow the chemokine gradient and addressins and integrins allow T-cells to move out of the vessels
86
Why are T-cells required?
T-cell mediated immunity is required for: * detection and elimination of pathogens which can live intracellularly * eliminate altered cells such as tumour cells
87
How do T-cells (T-killer cells) perform cell mediated cytotoxicity?
Cytotoxic T-cells (CTL) kill target cells (those which present MHC class I with virus peptides) via apoptosis i.e. fragmenting nuclear DNA CTL have stores of perforin, grazymes and granulysin in granules which are released after target recognition. Perforin = polymerises and forms pores in the target cell membrane If Fas is present on the target cell it can interact with FasL to induce cell death Cytokines may also be released
88
How do T-helper cells (CD4) activate macrophages?
Th1 effector cells activate macrophages to promote the killing of intracellular pathogens (mycobacterium and leishmania) activated macrophages = increase in CD40 and TNF-alpha receptors (pro-inflammatory molecules)
89
How do T-cells activate delayed type hypersensitvity (DTH) reaction?
DTH is associated with allergic reactions. Sensitisation = primary exposure to antigen and then Effector = second exposure causes a severe response to be triggered CD4+ Th1 cells release inflammatory cytokines which can recruit and activate macrophages - takes a few days to develop
90
What are the different T-helper cell subsets and their functions?
* Th1 * produces interferon-gamma, interleukin-2 and tumor necrosis factor-alpha * boosts intracellular immune response * activates macrophages * Th2 * produces IL4,5,13 * aid B-cell differentiation into antibody secreting plasma cells * Tfh * allows for class switching * secretes IL-21 * Th17 * secreted IL-17 in autoimmune diseases such as arthritis * Treg * inhibit activation of naive and effector T-cells by contact-dependent mechanisms or secreted cytokines
91
How do T and B lymphocytes collaborate?
There are 3 signals by which T and B cells collaborate: 1. ANTIGEN; B-cell presents antigen and T-cell has the MHC 2. CO-STIMULATION; link between CD40 on B-cell and CD40L on the T-cell along with CD28 which binds to B7 on the B-cell 3. CYTOKINES; IL-4, IFN-gamma and IL-21 released by T-cells Release of cytokines can cause class switching in B-cells and also the activation of B-cells to produce antibodies
92
How do cytokines produced by T-lymphocytes regulate other cells of the immune system?
T helper cells produce cytokines which can have a wide range of effects across many cells e.g. Treg, B-cells and macrophages Usually cytokines activate these cells to increase the immune response
93