imms Flashcards
describe interphase
interphase
-G1 - rapid growth, new organelles produced. proteins involved in spindle formation produced.
-S1 - dna replication occurs. Histone proteins synthesised. centrosome replication
-G2 - chromosomes condense and become visible
energy stores accumulate and mitochondria numbers increases
describe mitosis
-prophase - chromatin cndenses to give chromosomes
centrosomes nucleate microtubules which migrate to the poles of the nuclues.
-prometaphase
nuclear membrane breaks down
microtubules invade nuclear space
chromatids attach to microtubules
-metaphase
chromosomes line up on equatorial plate
-anaphase
sister chromatids pulled to opposite sides of the nucleus by spindle fibre contraction
-Telophase
nuclear membrane reforms around poles
chromosomes decondense to reform chromatin
cytokinesis
how is genetic variation brought about?
recombination between non sister chromatids in meisos as homologous chromosomes pair up. pieces of dna break off and recombine on non sister chromatids.
random assortment. random way in which homologous chromosomes line up on equatorial plane.
what is non disjunction
failure of chromosome pairs to separate during meiosis 1 and sister chromatids in meiosis 2
can result in downs syndrome or monosomy ie turners where only one X chromosome
what is gonadal mosaicism? Give an example of a disease caused by this.
occurs when the precursor germline cells to ova/spermatazoon are a mixture of two or more genetically different cell lines due to mitotic error.
more than one set of genetic information is found in the sex cell.
example: duchenne muscular dystrophy
what are the classification of genetic disease?
mendelian
- autosomal recessive
- autosomal dominant
- X linked
chromosomal
-abnormalities
non traditional
- mitochondrial (from mother) abnormal
- imprinting
- gonadal mosaicism
multifactorial
-genetic and environmental interaction
what is imprinting?
when only one out of the 2 genes is active.
what is lyonisation?
in the female only one X chromosome is active. The other is inactive and forms a BARR body. This is to prevent having 2 sets of proteins derived from the X chromosomes, would be double that of the males.
what is the negative dominant effect?
mutation causing a protein which has a loss of a particular function however can somehow outcompete the endogenous protein.
how can a child have a disease but parents are unaffected?
gonadal mosacism
mother may have reduced penetrance / variable expression
define autosomal
chromosomes 1-22
excludes sex chromosomes
define locus
position of a gene/DNA on geentic map
define genotype
genetic constitiution of an individual
define phenotype
physical characteristics due to genotype and environment
define allele
one of the several alternative forms of a gene at a specific locus
define consanguinity
reproductive union between 2 relatives
define autozygosity
homozygous by descent. a result of consanguinity.
define homozygous
both alleles same at a locus
define heterozygous
alleles at same locus different
define hemizygous
describes a gene carried on an unpaired chromosome. ie X for men
define penetrance
proportion of people with gene or genotype who show expected phenotype.
may be complete (all) or incomplete (not all show it)
define variable expression
variation in clinical features of a genetic disorder between individuals with same gene alteration
define sex limitation
expression of a particular characteristic limited to one of the sexes
define multifactorial condition
diseases due to a combo of genetic and environmental factors
define late onset
condition not manifested at birth
define congenital
condition is manifested at birth
what are the types of tissue?
epithelium supportive tissue (cartilage, bone, tendons,blood) muscle nerves germ cells
describe the haemotoxylin and eosin stain
haemotoxylin stains acidic things blue, such as DNA, RNA, cell nuclei.
eosin stains alkaline things red. such as cytoplasm, colloidal proteins.
describe alcian blue
stains structures rich in glycosaminoglycans blue
ie mucous goblet cell, mast cell granules and cartilage matrix
describe iron haematoxylin
stains nuclei and elastic fibres black
describe periodic acid shift stain
stains hexose sugars magenta
stains goblet cell matrix, glycogens, basement membrane, glycocalyx
describe toludine blue
stains nuclei, ribosomes, cytoplasm dark blue
stains cartilage matrix, mast cell granules pale blue
stains GAG rich bright purple
describe the components of the cytoskeleton
made up of microtubules, intermediate filaments and microfilaments.
microtubules are 25 nm diameter
made from alpha and bets tubulin arranged in groups of 13 to form a hollow tube. all cells have except erythrocytes
intermediate filaments
10 nm diameter
6 types of protein. they are anchored to the transmembrane protein and spread tensile forces though tissues. many different types. ie cytokeratins for epithelial cells.
microfilaments are made from actin.
5 nm diameter
forms a mesh around inner surface of cell membrane
describe the components of the cytoskeleton
made up of microtubules, intermediate filaments and microfilaments.
microfilaments 5nm
made of actin filaments
used in muscle contraction
+ and - end. negative end anchored, positive end is able to grow and meet some other some cell structure, gives tensile strength and stability.
intermediate filaments 10nm
made from 6 different protein types. similar role to microfilaments. found in the nuclear lamina and outside the cytoplasm.
microtubules 23nm
made from alpha and beta TUBULIN globular protein filaments arranged in a tube. negative end of tubule attaches to the centrosome.
synthesise the spindle important in DNA replication
involved in transport
which 2 proteins interact to cause cilia bending?
tubulin and dynein
form the microtubules of the cilia. 9 peripheral doublets and a pair of central .
what is the general formula for carbohydrates?
Cn(H2O)n
what isomers can a monosaccaride form? which is the most common?
D & L isomers
D is the most common in sugars.
will rotate plane polarised light right
what is an Unsaturated fatty acid?
means it has one or more double carbon bonds. double bond commonly CIS (functional groups on same side of double bond)
what are the purines and pyrimines?
Adenine and thymine are purines
have 2 carbon nitrogenous ring
guanine and Cytosine are pyrimines
have only one carbon nitrogenous ring
what is the structure of a nucleotide?
ribose sugar in RNA, deoxyribose in DNA
phosphate
nitrogenous base
what bonds are found between the phosphate and sugar?
phosphodiester
what form are most amino acids found in?
the L enantiomer form
what is the difference between a protein and a peptide?
protein
greater than 50 aa
functional
synthesised by the cell
peptide - fragment of a protein
less than 50 aa
describe the structure of a protein
primary structure is the sequence of amino acids determined by the base sequence
secondary structure is the folding of the polypeptide chain into either alpha helix or beta pleated sheets.
in the alpha helix, every NH group donates the H to a CO group located 3/4 residues earlier on the protein sequence.
super secondary structure, the combination of secondary structures together
tertiary structure
complex shape formation as a result of bonds. ie disulfide, hydrogen, ionic, VDW, electrostatic, covalent
Quaternary structure is a 3D protein composed of several sub-units. 2 or more tertiary structures.
why can DNA polymerase only synthesis daughter DNA from 3’ to 5’ end?
DNA polymerase reads template DNA from 3’ end to 5’ end. Daughter DNA synthesised from 5’ end to 3’ end.
However 3’ end of template does not have a phosphate group, this is needed to provide energy for synthesis. Therefore daughter DNA synthesised starting from the 5’ end, phosphate group able to provide energy.
describe the process of DNA replication
- tropoisomerase unwinds DNA helix
- DNA helicase breaks hydrogen bonds exposing dna nucleotides behind the replication fork
- SSB (single strand binding proteins) coat the single strands preventing annealing.
- Primase enzyme makes a short DNA single strand primer complementary to each end of the 2 DNA strands.
- DNA polymerase can now begin adding free nucleotides to the exposed nucleotides. read strand in the 3’ to 5’ direction so synthesis of new DNA daughter strand from 5’ to 3’.
- one leading strang and one lagging strand. leading strand is the one where DNA polymerase is about to synthesis DNA continously and is moving towards replication fork following action of DNA helicase. lagging
describe the process of DNA replication
- tropoisomerase unwinds DNA helix
- DNA helicase breaks hydrogen bonds exposing dna nucleotides behind the replication fork
- SSB (single strand binding proteins) coat the single strands preventing annealing.
- Primase enzyme makes a short DNA single strand primer complementary to each end of the 2 DNA strands.
- DNA polymerase can now begin adding free nucleotides to the exposed nucleotides. read strand in the 3’ to 5’ direction so synthesis of new DNA daughter strand from 5’ to 3’.
- one leading strang and one lagging strand. leading strand is the one where DNA polymerase is about to synthesis DNA continously and is moving towards replication fork following action of DNA helicase. lagging strand is the one where DNA polymerase is moving away from DNA helicase, therefore must keep restarting to synthesise DNA on newly exposed template DNA.
- RNAseH removes primers. produced Okazaki fragments on the lagging strand
- DNA ligase connects fragements together.
what are the start and stop codons?
start AUG
stop UGA UAG UAA
How can one gene code for a variety of proteins
exon shuffling after introns are removed
what form are genes that are actively used in a cell in?
euchromatin
if not active, in heterochromatin form
describe a deletion mutation
deletion - in frame (whole codon is lost/1AA removed) or out of frame (whole sequence after mutation altered)
what is a splice site mutation
point mutation which affects the accurate removal of introns. introns may be translated
what is a non sense mutation
point mutation forming a stop codon. incomplete non functional protein.
what is a mis sense mutation
mis sense mutation - a point mutation, results in codon coding for a diff amino acid.
how many grams/kg is the triglyceride storage?
15 kg
how many grams/kg is the glycogen storage?
200 g in liver 150 g in muscle