Human Genome Flashcards

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1
Q

Definition of genomics

A

The study of the genome

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2
Q

Definition of the genome

A

The entire make up of an organism

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3
Q

Where is genetic information stored?

A

DNA

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4
Q

How is this information arranged?

A

Arranged in genes that code for proteins

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5
Q

Where are genes located?

A

On chromosomes

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6
Q

What is a somatic cell?

A

Any cells of a living organism other than the reproductive cells. They are diploid.

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7
Q

What are gametes?

A

Sperm/egg cells. They are haploid

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8
Q

Define haploid

A

Only contains half the usual number of chromosomes

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9
Q

Define diploid

A

Normal number of chromosomes (one maternal set and one paternal set). This is 46 in humans

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10
Q

How many chromosomes in somatic cell?

A

There are 46 chromosomes (23 pairs). 22 of these pairs are autosomes (look the same in male and female). The 23rd pair is the sex chromosomes

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11
Q

What are autosomes?

A

These are non-sex chromosomes. There are 22 pairs and they are numbered in order of size (1 biggest)

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12
Q

What are the sex chromosomes in females?

A

2 copies of X chromosome

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13
Q

What are the sex chromosomes in males?

A

1 copy of X chromosome and 1 copy of Y

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14
Q

How & why are red blood cells exceptions?

A

Lose their nucleus to help them squeeze through capillaries

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15
Q

What is X-inactivation?

A

X-inactivation is when one of the two X chromosomes in female cells is inactivated

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16
Q

Why does X-inactivation happen?

A

So that female cells do not express twice as much of the X chromosome genes as male cells

17
Q

What is a Barr body

A

This inactivated X chromosome is pushed to the edge of the nucleus

18
Q

What is Xist?

A

X-inactive specific transcript

Is a non-coding regulatory RNA on the X chromosome that acts as a major effector of the X-inactivation process

19
Q

How does Xist work?

A

Switches off a copy of the X chromosome in XX cells

20
Q

Describe functional chromosomes in women

A

Don’t have 46 functional chromosomes in each 2n cell

BECAUSE

They inactivate one copy of their X chromosome in each cells (Xist)

21
Q

Why do females inactivate one copy of their X chromosome in each cell?

A

So that females don’t express as much of the X chromosome genes as male cells

22
Q

What do females do with this silenced X chromsome?

A

Push it to edge of nucleus –> Barr body

23
Q

Describe genome of chimps and gorillas

A

High similarity to humans but 2n = 48

24
Q

What is human chromosome 2 an equivalent of in chimps?

A

Human chromosome 2 is equivalent of fusion of chimp chromosomes 12 and 13

Therefore humans 2n = 46 and chimps 2n = 48

25
Q

Describe genome of Fugu fish compared to humans

A

Fugu genome is 7.5x smaller than human genome (genes very densely packed)

26
Q

What is VNTRs?

A

Variable number tandem sequences

A location in a genome where a short nucleotide sequence is organised as a tandem repeat. These can be found on many chromosomes, and often show variations in length (number of repeats) among individuals.

E.g. ATTCG ATTCG ATTCG (all in a row)

27
Q

What can VNTRs be a result of?

A

Can be caused by slippage of DNA polymerase during replication

Slippage can sometimes cause disease

28
Q

What is Huntington’s Disease caused by?

A

Expansion of long CAG repeat

29
Q

What is PCR? How is it used?

A

Polymerase chain reaction

When there are multiple copies of short sequence VNTRs, some of these are of a convenient size to be amplified by PCR. Uses unique seqences on either side of VNTR.

Variable number repeats help to identify us

E.g:

PCR oligo 1 –> (ATTCG ATTCG ATTCG ATTCG)n

30
Q

What are PCR and VNTRs used for?

A

DNA fingerprinting, forensic testing, paternity testing

31
Q

What is DNA slippage?

A

A mutation process that occurs during DNA replication - involves denaturation and displacement of the DNA strands, resulting in mispairing of the complementary bases

Slipped strand mispairing is one explanation for the origin and evolution of repetitive DNA sequences.