Human genome Flashcards

1
Q

example of SNP

A

sickle cell

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2
Q

what is the number in karyotype based on?

A

size

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3
Q

types of genotypic and phenotypic variation in humans

A
  • stature
  • eye color
  • physiology
  • drug resposne
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4
Q

two mechanisms of genetic variation

A
  • heritable variation

- de novo variation (new)

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5
Q

homologous recombination in meiosis

heritable or new variation?

A

heritable

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6
Q

independent assortment of chromosomes in meiosis

heritable or new variation?

A

heritable

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7
Q

spontaneous point mutations

heritable or new variation?

A

new

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8
Q

insertions and deletions

heritable or new variation?

A

new

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9
Q

copy number changes

heritable or new variation?

A

new

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10
Q

Synapsis

A
  • alignment of chromosomes from mom/dad
  • physical exchange of chromosomes
  • misalignment will see
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11
Q

what leads to genetic diversity?

A

independent assortment

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12
Q

region of genome containing a gene

A

locus

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13
Q

alleles at given locus

A

genotype

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14
Q

when does de novo variation occur?

A

meiosis
germ cells
can occur in somatic but not passed on

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15
Q

what is an important source for variation of cancer?

A

de novo variation in somatic cells

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16
Q

mechanisms of de novo variations

A
  • DNA replication errors

- Chromosomal crossing over events

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17
Q

which arm is short?

p or q

A

p

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18
Q

which arm is long

p or q

A

q

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19
Q

how many genes are in the genome?

A

21,000

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20
Q

types of variations in genome

A
  • SNP
  • insertions/deletions (indels)
  • CNV
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21
Q

t/f SNPs if present in 1% of population

A

true

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22
Q

where does most methylation occur?

A

promotor

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23
Q

what part of the gene is important in epigenetic?

A

promotor

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24
Q

mutation in coding region of gene

A

may or may not affect protein

depends on type of mutation

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25
are exons coding or noncoding
coding
26
are introns coding or noncoding
non coding
27
how many exons are on a gene?
5
28
how many introns are on a gene?
5
29
where do SNPs occur?
directly in the gene
30
how many chromosomes are 99.5% similar in humans?
2
31
how many SNPs have been catalogued?
3.8 million
32
How many common SNPS does each person have?
3-5 million
33
t/f effect of SNPs depends on sequence, location, heterzyogous/homo, dominant/reccessive
true
34
SNP change in coding region types
synonymous or non-synonymous
35
synonymous SNP
silent | splicing
36
non-synonymous SNP
missense | nonsense
37
noncoding SNP
promoter splicing silent
38
change in amino acid SNP
non-synonymous
39
change in nucleotide SNP
synonymous
40
missense mutation
new AA
41
nonsense mutation
stop codon
42
size range of indels
2 bp - 1 kb
43
location of indels
introns, eons, promoters
44
consequence of indels depends on what?
location
45
what percent of the human reference genome is CNV?
5-25%
46
How many CNVs do people have inherited?
1500
47
Location of CNVs
introns eons entire genes intergenic region
48
what is a molecular mechanism to generate CNVs?
NAHR | NHEJ
49
small secreted antimicrobial peptides coded for my DEFB genes
B defensin
50
example of CNV
B defensin
51
Less than 4 B defensin
induce immune response with Crohn's
52
More than 4 B defensin
induce immune response with psoriasis
53
CNV and B defensin
too many or not enough could be bad
54
What do people with high starch diet have more of?
AMY1 copies
55
search genome for SNPs that occur with diseases
GWAS (genome wide association studies)
56
characterize millions of SNPs
haplotype map
57
what lead to a greater understanding of human variation and how it contributes to health and disease?
haplotype map
58
what percentage of SNPs are shared amongst ethnic groups
90%
59
SNP database
dbSNP build 132 | HapMap
60
How much variation in genome do humans possess?
4 million as SNPs, Indels and CNVs