Historical people and Intro material Flashcards
Robert Hooke
First described microorganisms with a crude microscope
Anton Van Leeuwenhoek
First to describe bacteria using a microscope that he constructed. He was able to draw these organisms
Ferdinand Cohn
- Father of bacteriology
2. Discovered bacterial endospores
Louis Pasteur
- Father of Immunology and Microbiology
- Disproved spontaneous generation
- Came up with pasteurization
- Vaccines for anthrax, foul, rabies, and cholera
- Discriminated between organism optical isomers
- Alcohol fermentation
What is spontaneous generation
Thought that living organisms originated from nonliving matter
Robert Koch
- Discovered bacterial colonies
- Discovered method to grow isolated colonies
- Proved what microorganism could cause a specific disease
Koch Postulates
- Took dead animal and streak plated its blood and found a pathogen
- This pathogen was then injected into a live animal
- Once animals had died then he took another blood sample and streak plated it again
- Once this was complete he was able to see the pathogen from the original sample and the new culture are the same.
Characteristics of prokaryotes
- No membrane bound organelles
- No Nucleus (nucleoid)
- Double stranded circular DNA
- Cell wall present
- Ribosomes present
- Binary Fission
- Plasmids
- Energy generated in cytoplasmic membrane rather than mitochondria
EX: Staph and E Coli
Characteristics of Eukaryotes
- Membrane bound organelles
- Nucleus
- Mitosis
- Double stranded linear DNA
- Cell wall
- Ribosomes
- Some plasmids
EX: Epstein Barr Virus, HIV
Characteristics of a virus
1. No organelles (ribosomes) 2 RNA or DNA 3. Neither prokaryotic or eukaryotic 4. Infect cells in order to reproduce 5. intracelluar
Human non-enveloped viruses
- Rhinovirus
- Papillomavirus
- Poliovirus
Human enveloped viruses
- Sars
- HIV
- Hepatitis C
Micobiome
Collection of all the microbiota genomes
Plasmid
Circular extrachromosal genetic elements that are not essential for growth but can be when the bacteria is in a harsh environment
Comparative Ribosomal RNA sequencing
3 Domains:
Bacteria
Archaea
eukaryotes
Eukaryotic Microorganisms
Fungi, protozoa, and algae
Endosymbiosis
Mitochondria and Chloroplasts originally from archaea established residency in eukaryata
Mitochondrial DNA
Double stranded circular DNA
16.5 kb
37 essential genes for oxidative phosphorylation
Expression involves over 100 nuclear genes
Evolution
Change in line of descent over time to give you a new species (phylogeny)
Crown species for Eukaryotes
Animals
Plants
Fungi
Characteristics of Bacteria
- Ester linkage
- Glycerol 3 phosphate backbone
- Pathogen
- Bacterial Metabolism
Characteristics of Archaea
- Ether linkage
- Glycerol 1 phosphate backbone
- Eukaryotic-like metabolism
- Transcription and Translation=Eukaryotic-like
- No pathogens
- Methanogenesis present
- Lack peptidoglycan and have proteins and polysaccharides
Compound Light Microscope Characteristics
Optimizes resolution with a high gathering characteristics.
Limit of resolution=.2um
40X lens=protozoa, fungi
100x lens=bacteria and archaea
Light Microscopes reveal
- Size and shape
- Internal and external structures
- Discriminate structures
Gram Stain Technique
- Flood slide with crystal violet
- Add iodine for 1 min
- Decolorize with alcohol for 20 seconds
- Counterstain with safranin for 1-2 min
Gram Neg-RED
Gram Pos-Purple
Acid Fast stain differential stain
Used: for mycobacterium tuberculosis because it has mycolic acids therefore it was keep the color of the original stain even after being treated with HCL
- First stain with Carbofucsin Red
- Use HCL
- Methylene blue as final stain
Acid Fast: RED
Non Acid Fast : Blue
Phase Contrast
Dark image is projected on a light background and image contrast from differential refractive index of cell structures
Dark field
Dark field and light image and allows for greater resolution
Florescent Microscopy
Tag a part of microbe and hit it with a wavelength of light that will excite it.
Electron microscope
- Has the greatest resolution power and the limits of resolution are .2nm
- Shows fine details on the surface and on the inside
- Electrons are beamed through and you get a negative image on the paper
Confocal Microscopy
Allows imaging through thick species and each plane can be visualized
Surface to Volume ratio for Prokaryotes
Larger surface to volume ratio than eukaryotes because they take in more nutrients and get rid of more waste
Differences in morphology
Round=Coccus Rod=bacillus Spiral=spirillium Tight spiral=spirochete Filamentous=hypha
Arrangement of bacteria
Strep-chain of cells
Staph-cluster of cells
Diplo-two cells together
Cytoplasmic Membrane of Bacteria
75% protein
25% phospholipids
Site for energy conservation
Structures such as pili and flagella attach
Prokaryotic Transporters
- Simple
- Phosphotransferase type
- ABC (ATP-binding cassette)
Simple Transporter
Driven by proton motive force
Group Transporter
- Chemical modifications of nutrient being transported and driven by PEP( Phosphorylation).
- Occurs at cytoplasmic membrane
- Glucose is transported into the cell and phosphorylated into G6P so that is can be catabolized to pyruvate and ATP
ABC System
Used to get nutrients from periplasm to inside cell. Periplasm is a space that is exterior to cell membrane. It is a 3 component system and has a binding protein that takes up nutrients to transporter and move in cell. This will require energy from PMF, ATP or energy rich substance.
Phosphotransferase system in E COLI
- Modifications of Glucose/fructose/ Mannose occur during transport across the membrane
- Best studied system
- Required 5 proteins
- PEP for energy
Translocases
Used for export of specific materials (proteins) and inserting into prokaryotic membrane
Sec Translocase system: exports proteins and inserts integral membrane protein into a membrane with 7 proteins
Type 111 Secretion system: Insert protein directly into host
Gram Positive cell wall material
- Peptidoglycans (retains crystal violet)
- Teichoic acid
Smooth looking
Gram negative cell wall material
- Peptidoglycans (rigidity and stability)
- Outer memembrane (2nd lipid bilayer)
Rough looking and will decolorize with ethanol
Lysosomes
Have the ability to destroy peptidoglycans and is a way to control growth
Peptidoglycan consists of:
- NAG and NAM
- NAM is crosslinked by short peptides between strands (tetra peptide)
- Many layers of peptidoglycan in Gram +
NAM has 4 things bound to it
L-alanine
D-alanine
D-glutamic acid
lysine or diminopimelic acid
Bond between NAG and NAM
1,4-glycosidic covalent bond (lysosome sensitive area)