Glossary Flashcards
Fossil
Any recognisable structure originating from an organism, or any impression that has been preserved over geological time
Ontogeny
The origination and development of an organism, from fertilisation to maturity.
Phylogeny
The evolutionary history of a kind of organism.
Ultrastructure
The detailed structure of a biological specimen (cell, tissue, organ) observed by electron microscopy.
DNA
Deoxyribosenucleic Acid - The fundamental hereditary material of all living organisms
Protein
Long chain polymer of amino acids.
Homology
The existence of shared ancestry between a pair of structures or genes in different species
Paralogy
An anatomical similarity without shared ancestry
Cell
The simplest structural unit of a living organism.
Archaea
A group of single celled prokaryotic organisms that have distinct molecular characteristics separating them from bacteria.
Bacteria
A large group of unicellular microorganisms with peptidoglycan cell walls, no organelles and no organised nucleus.
Eukarya
Organisms made up of eukaryotic cells (genetic material in a nucleus)
Prokaryotic
Prokaryotic cells are unicellular, and have no nuclei or membrane enclosed organelles.
Peptidoglycan
The cell wall material of many bacteria, consisting of a single enormous molecule that surrounds the entire cell
Circular Chromosome
Bacterial chromosomes contained in a circular DNA molecule
Nucleoid
The region that harbours the chromosomes of a prokaryotic cell, with no membrane.
Ribosome
A small particle in the cell that is the site of protein synthesis
Flagellum
A long, whip like appendage that propels cells. Prokaryotic flagella differ sharply from those found in eukaryotes.
Nucleus
A dense organelle present in most eukaryotic cells, typically a single rounded structure bonded by a double membrane, containing the genetic material
Organelle
A membrane-bound compartment or ‘mini-organ’ within a cell with a specialised function.
Chromosomes
Thread like structures of nucleic acids and protein found in the nucleus of most living cells, carrying genetic information in the form of genes.
Histones
Any group of basic proteins found in chromatin
Chromatin
The material of which the chromosomes of eukaryotes are composed, consisting of protein, RNA and DNA
Nuclear Envelope
The nuclear membrane, being a double membrane which surrounds the genetic material and nucleolus in eukaryotic cells.
Nuclear Pores
Large protein complexes that cross the nuclear envelope
Endomembrane System
A system of intracellular membranes that exchange material with one another, consisting of the Golgi Apparatus, Endoplasmic Reticulum and lysosomes when present.
Endoplasmic Reticulum
A system of membranous tubes and flattened sacs found in the cytoplasm of eukaryotes (smooth and Rough)
Golgi Apparatus
A system of concentrically folded membranes found in the cytoplasm of eukaryotic cells; functions in secretion from the cell by exocytosis.
Glycosylation
The addition of carbohydrates to another typo of molecule, such as a protein
Cisternae
A flattened membrane disk that makes up the Golgi Apparatus
Vesicles
Within the cytoplasm, a membrane enclosed compartment that is associated with other organelles such as the Golgi Apparatus
Glycoproteins
A protein to which sugars are attached
Cytoskeleton
The network of microtubules and microfilaments that gives a eukaryotic cell its shape and its capacity to arrange its organelles and move
Microtubules
Tubular structures made up of 13 filaments forming a cylinder found in centrioles, spindle apparatus, cilia, flagella and the cytoskeleton of eukaryotic cells
Microfilaments
A fibrous structure in eukaryotic cells made up of actin monomers. Play roles in the cytoskeleton, in cell movement, and in muscle contraction. They interact with myosin motors.
Actin
A protein that makes up the cytoskeletal microfilaments in eukaryotic cells and contractile protein of muscle
Intermediate Filaments
Cytoskeletal compartments found int he cells of many animal species
Myosin
One of the two contractile proteins of muscle
Dynein
A motor protein in cells which converts the chemical energy contained in ATP into the mechanical energy of movement. Also cause the movement of the flagellum - one end is permanently attached, other end walks along the other microtubule, causing them to slide against each other.
Kinesin
A motor protein in Eukaryotic Cells. Uses ATP to walk along microtubules carrying molecules.
Lipids
Non-polar, hydrophobic molecules that include fats, oils, waxes, steroids and the phospholipids that make up biological membranes
Sterols
Also known as Steroid alcohols, are a sub group of steroids that occur naturally in plants, animals and fungi, with an OH group (e.g. cholesterol)
Fatty acids
A molecule made up of a long, non-polar hydrocarbon chain and a polar carboxyl group
Triglycerides
Simple lipids in which three fatty acids are combined with one molecule of glycerol
Membranes
A phospholipid bilayer forming a barrier that separates the internal contents of a cell from the nonbiological environment, or enclosing the organelles within the cll. The membrane regulates the molecular substances entering or leaving the cell
Fluid mosaic model
A molecular model for the structure of biological membranes consisting of a fluid phospholipid bilayer in which suspended proteins are free to move in the plane of the bilayer
Differentially permeable
A semipermeable membrane is a membrane that will only allow certain molecules or ions to pass through it b diffusion, or occasionally by more specialised cases of facilitated transport
Diffusion
Random movement of molecules or other particles, resulting in an even distribution of the particles when no barriers are present
Osmosis
Movement of water across a differentially permeable membrane, from one region of high concentration towards a region of low concentration
Facilitated diffusion
Passive movement through a membrane involving a specific carrier protein, does not proceed against a concentration gradient
Active Transport
The energy dependent transport of a substance across a biological membrane against a concentration gradient
Endocytosis
A process by which liquids or solid particles are taken up by a cell through invagination of the cell membrane
Exocytosis
A process by which a vesicle within a cell fuses with the plasma membrane and releases its contents to the outside
Isotonic
Having the same solute concentration
Hypertonic
Having a greater solute concentration
Desmosomes
An adhering junction between animal cells
Plasmadesmata
Cytoplasmic strands connecting two adjacent plant cells
Gap Junctions
2.7nm gap between plasma membranes of two animal cells, spanned by protein channels, Gap junctions allow chemical substances or electrical signals to pass from cell to cell
Protein
Long chain polymer of amino acids with twenty different common side chains. Occurs with its polymer chain extended in fibrous proteins, or coiled into a compact macromolecule i.e. enzymes and other globular proteins. The component amino acids are encoded in triplets of messenger RNA, and proteins are the product of genes
Amino Acid
An organic compound containing both NH2 and COOH groups. Proteins are polymers of amino acids.
Peptide bond
The bond between amino acids in a protein; formed between a carboxyl group and an amino group (-CO-NH-) with the loss of water molecules
Enzymes
Catalytic proteins that speed up biochemical reactions
CAtalyst
A chemical substance that accelerates a reaction in which the products have higher free energy than the reactants, thereby requiring free energy input to occur.
Activation Energy
The energy barrier that blocks the tendency for a chemical reaction to occur
Allosteric inhibition
Allosteric regulation is the regulation of the activity of a protein (usually an enzyme) by the binding of an effector molecule to a site other than the active site.
Cofactors
Inorganic ions that are weakly bound to enzymes and required for its activity
Respiration
The catabolic pathways by which electrons are removed from various molecules and passed through intermediate electron carriers to O2, generating H2O and releasing energy.
ATP
(adenosine triphosphate) an energy storage compound containing adenine, ribose, and three phosphate groups. When it is formed from ADP, useful energy is stored; when it is broken down (to ADP or AMP), energy is released to drive endergonic reactions
Aerobic
In the presence of oxygen; requiring or using oxygen
Anaerobic
Occurring without the use of O2
Fermentation
The anaerobic degradation of a substance such as glucose to smaller molecules such as lactic acid or alcohol (ethanol) with the extraction of energy
NAD+ and NADH
(nicotinamide ademine dinucleotide) A coenzyme which acts as an electron carrier in redox reactions, especially in glucose metabolism. Exists in an oxidised (NAD+) and reduced (NADH) form. The oxidation is highly exergonic, so NADH is able to hold lots of energy which can later be transferred to ATP
FAD and FADH2
Another electron carrier in glucose metabolism
Reduction
Gain of electrons by a chemical reactant
Oxidation
Loss of electrons by a chemical reactant
Glycolisis
The enzymatic breakdown of glucose to pyruvic acid
Kreb’s Cycle
(Citric Acid Cycle/TCA Cycle) In cellular respiration, a set of chemical reactions whereby acetyl CoA is oxidised to carbon dioxide and Hydrogen atoms are stored as NADH and FADH2
Oxidative Phosphorylation
ATP formation in the mitochondrion, associated with the flow of electrons through the respiratory chain
Mitochondria
Energy generating organelles in eukaryotic cells that contain the enzymes of the citric acid cycle, the respiratory chain and oxidative phosphorylation
Respiratory Chain
The terminal reactions of cellular respiration, in which electrons are passed from NAD or FAD, through a series of intermediate carriers, to molecular oxygen with the concomitant production of ATP
Cristae
Folds in the inner membrane of mitochondria, giving the inner membrane its characteristic wrinkled shape and providing a large amount of surface area for chemical reactions to occur on.
Mitochondrial matrix
The fluid interior of a mitochondrion, enclosed y the inner mitochondrial membrane
Plastids
A class of plant organelles that includes the chloroplast. The site of manufacture and storage of important chemical compounds used by the cell.
Chloroplast
An organelle bounded by a double membrane containing the enzymes and pigments that perform photosynthesis. Chloroplasts appear only in eukaryotes.
Thylakoids
A flattened sac within a chloroplast. Thylakoid membranes contain all of the chlorophyll in a plant, in addition to electron carriers of phosphorylation. Thylakoids stack to form grana
Stroma
The fluid contents of an organelle such as a chloroplast or mitochondria
Endosymbriosis
The theory that the eukaryotic cell evolved via the engulfing of one prokaryotic cell by another
Centromere
The region where sister chromatids join
Centrosome
The major microtubule organising centre of animal cell
Centriole
A paired organelle that helps organise the microtubules in animal and protist cells during nuclear division.
Chromatin
The nucleic acid protein complex that makes up eukaryotic chromosomes
Chromatid
A newly replicated chromosome, from the time molecular duplication occurs until the time the centromeres separate (during anaphase of mitosis or of meiosis II)
Chromosome
In bacteria and viruses, the DNA molecule that contains most or all of the genetic information of the cell or virus. In eukaryotes, a structure composed of DNA and proteins that bears part of the genetic information of the cell
Kinetechore
Specialised structure on a centromere to which microtubules attach
Spindle
Array of microtubules emanating from both poles of a dividing cell during mitosis and playing a role in the movement of chromosomes at nuclear division
Macromolecule
A giant (molecular weight > 1000) polymeric molecule. The macromolecules are the proteins, polysaccharides and nucleic acids
Polymer
A large molecule mad up of similar or identical subunits called monomers
Condensation
A chemical reaction in which two molecules become connected by a covalent bond and a molecule of water is released (AH + BOH -> AB + H2O)
Carbohydrates
Organic compounds containing carbon, hydrogen and oxygen in the ration 1:2:1 (sugars, starch and cellulose)
Polysaccharide
A macromolecule composed of many monosaccharides (simple sugars) - Cellulose and Starch
Monosaccharide
A simple sugar. Oligosaccharides and polysaccharides are made up of monosaccharides.
Nucleic Acid
A polymer made up of nucleotides, specialised for the storage, transmission and expression of genetic information
Phosphodiester bond
The connection in a nucleic acid strand, formed by linking two nucleotides
Nucleotide
The basic chemical unit in nucleic acids, consisting of a pentose sugar, a phosphate group and a nitrogen containing base
Purine
One of the two types of nitrogenous bases in nucleic acids. Each of the purines - adenine and guanine - pairs with a specific pyrimidines
Pyrimidine
One of the two types of nitrogenous bases in nucleic acids. Each of the pyrimidines -cytosine, thymine and uracil - pairs with a specific purine.
Nitrogenous base
A nitrogen containing molecule that has the same chemical properties as a base, that is attached to each sugar in the sugar phosphate backbone of nucleic acids.
Base pair
In double stranded DNA, a pair of nucleotides formed by the complementary base pairing of a purine on one strand and a pyrimidine on the other
Genetic code
The set of instructions, in the form of nucleotide triplets, that translate a linear sequence of nucleotides in mRNA into a linear sequence of amino acids in a protein
Internal Environment
In multicellular organisms, includes blood plasma and intestitial fluid. i.e. the extracellular fluids that surround cells
Interstitial Fluid
Extracellular fluid that is not contained in the vessels of a circulatory system
Homeostasis
The maintenance of a steady state, such as a constant temperature, by means of physiological or behavioural feedback responses
Epithelial Tissue
A type of animal tissue made up of sheets of cells that lines or covers organs, makes up tubules, and covers the surface of the body (squamous, columnar, cuboidal, stratified)
Muscle Tissue
Excitable tissue that can contract through the interactions of actin and myosin. There are three types: skeletal, smooth and cardiac
Connective tissue
A type of tissue that connects or surrounds other tissues; its cells are embedded in a collagen-containing matrix. Includes cartilage, blood, bone and fat
Nervous Tissue
Tissue specialised for processing and communicating information
Neuron
A nervous system cell that can generate and conduct action potentials along an axon to a synapse with another cell
Glial Cells
One of the two classes of neural cells; glia do not typically conduct action potentials
Ectotherm
An animal that is dependent on external heat sources for regulating its body temperature
Endotherm
An animal that can control its body temperature by the expenditure of its own metabolic energy
Hypothermia
Below-normal body temperature
Hibernation
The state of inactivity of some animals during winter; marked by a drop in body temperature and metabolic reate
Basal Metabolic Rate
The minimum rate of energy turnover in an awake (but resting) bird or mammal that is not expending energy for thermoregulation
Beta Pleated Sheet
A type of protein secondary structure, results from hydrogen bonding between polypeptide regions running antiparallel to one another
Alpha Helix
A prevalent type of secondary protein structure. A right hand helix.
Signal Transduction Pathway
The series of biochemical steps whereby a stimulus to a cell (such as a hormone or neurotransmitter binding to a receptor) is translated into a response of the cell.
Autocrine
A chemical signal that binds and affects the cell that makes it
Paracrine
A chemical signal that acts locally, near the site of its secretion.
Receptor Protein
A protein that can bind to a specific molecule, or detect a specific stimulus, within the cell or in the cell’s external environment. Receptors can be located in the cell membrane, the cytoplasm or the nucleus.
Ion Channel
An integral membrane protein that allows ions to diffuse across the membrane in which it is embedded
Protein Kinase
An enzyme that catalyses the addition of a phosphate group from ATP to a target protein
Protein Kinase Cascade
A series of reactions in response to a molecular signal, in which a series of protein kinases activate one another in a sequence, amplifying the signal at each step
G Protein
A membrane protein involved in signal transduction, characterised by binding GDP or GTP
G Protein-linked receptors
A class of receptors that change configuration upon ligand binding such that a G protein binding site is exposed on the cytoplasmic domain of the receptor, initiating a signal transduction pathway.
Effector Protein
In cell signalling, a protein responsible for the cellular response to a signal transduction pathway
Second Messenger
A compound, such as cAMP, that is released within a target cell after a hormone (the first messenger) has bound to a surface receptor on a cell; the second messenger triggers further reactions within the cell
Hormone
A chemical signal produced in minute amounts at one site in a multicellular organism and transported to another site where it acts on target cells
Neurohormone
A chemical signal produced and released by neurones and subsequently acts as a hormone
Tropic Hormones
Hormones produced by the anterior pituitary that control the secretion of hormones by other endocrine glands
Endocrine Gland
An aggregation of secretory cells that secretes hormones into the blood. The endocrine system consists of all endocrine cells and glands in the body that produce and release hormones
Exocrine gland
Any gland that secretes molecules into a duct
Hypothalamus
The part of the brain lying below the thalamus; it coordinates water balance, reproduction, temperature regulation and metabolism
Anterior Pituitary
The portion of the vertebrate pituitary gland that derives from gut epithelium. Produces Tropic Hormones.
Posterior Pituitary
A portion of the pituitary gland derived from neural tissue; involved in the storage and release of antidireutic hormone (ADH) and oxytocin
Negative Feedback
In regulatory systems, information that decreases a regulatory response, returning the system to the set point
Fight or Flight Response
A rapid physiological response to a sudden threat mediated by the hormone epinephrine/adrenalin.
Neuron
A nervous system cell that can generate and conduct action potentials along an axon to a synapse with another cell
Dendrites
Branching fibres (processes) of a neuron. Dendrites are usually short compared with the axon, and commonly receive information then carry it to the neuronal cell body
Axon
The process (branching structure) of a neuron that conducts action potentials away from the cell body
Axon Terminal
The end portion of an axon, which passes information to another cell. Axon terminals form synapses with other cells and release neurotransmitters
Glia
One of the two classes of neural cells; glia support, nourish and insulate neurons.
Central Nervous System (CNS)
The portion of the nervous system that is the site of most information processing, storage, and retrieval; in vertebrates, the brain and spinal cord.
Peripheral Nervous System (PNS)
The portion of the nervous system that transmits information to and from the central nervous system, consisting of neurons that extend or reside outside the brain or spinal cord and their supporting cells
Afferent Neurons
Neurons that carry impulses towards the central nervous system (Sensory Neurons)
Efferent Neurons
Neurons that carry impulses outward from the central to the peripheral nervous system (Motor Neurons)
Interneuron
A neuron that communicates information between two other neurons
Sensory System
A set of organs and tissues for detecting a stimulus; consists of sensory cells, the associated structures, and the neural networks that process the information
Synapse
A specialised type of junction where a neuron meets its target cell (which can be another neuron or some other type of cell) and information in the form of neurotransmitter molecules is exchanged across a synaptic clerft
Synaptic Cleft
The space between the presynaptic cell and the postsynaptic cell
Presynaptic Cell
The neuron that transmits information to another cell at a synapse
Postsynaptic Cell
The cell that receives information from a neuron at a synapse
Neurotransmitter
A substance produced in and released by a neuron (the presynaptic cell) that diffuses across a synapse and excites or inhibits another cell (the postsynaptic cell)
Myelin
Concentric layers of plasma membrane that form a sheath around some axons; myelin provides the axons with electrical insulation and increases the rate of transmission of action potentials
Oligodendrocyte
A type of glial cell that myelinates axons in the central nervous system
Schwann Cell
A type of glial cell that myelinates axons in the peripheral nervous system
Cerebrum
The dorsal anterior portion of the forebrain, making up the largest part of the mammalian brain; the chief coordination centre of the nervous system and the major information processing areas of the vertebrate brain, consists of two cerebral hemispheres
Cerebral Cortex
The thin layer of grey matter (neuronal cell bodies) that overlies the cerebrum
Cerebellum
The brain region that controls muscular coordination; located at the anterior end of the hindbrain
Brainstem
The portion of the vertebrate brain between the spinal cord and the forebrain, made up of the medulla, pons and midbrain
Frontal Lobe
The largest of the brain lobes in humans; involved with feeling and planning functions; includes the primary motor cortex
Parietal Lobe
Processes complex stimuli and includes the primary somatosensory cortex
Temporal Lobe
Receives and processes auditory and visual information; involved in recognising, identifying and naming objects
Occipital Lobe
Processes visual information