Genomes Flashcards

1
Q

What is a genome?

A

A: A genome is the complete set of genetic material (DNA) in an organism, including all of its genes and non-coding sequences.

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2
Q

What is the Central Dogma of Molecular Biology?

A

A: The Central Dogma states that DNA is transcribed into RNA, which is then translated into proteins.

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3
Q

What are exons and introns?

A

A: Exons are coding sequences in genes that are expressed as proteins, while introns are non-coding sequences that are spliced out during mRNA processing.

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4
Q

What is codon bias?

A

A: Codon bias refers to the preference of certain codons over others in an organism, affecting translation efficiency.

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5
Q

What are the key steps in DNA sequencing?

A

A: DNA is fragmented, adapters are added, fragments are sequenced, and overlapping reads are assembled into a continuous sequence.

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6
Q

Only 2-3% of the human genome codes for

A

proteins.

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7
Q

There are ~23,000 protein-coding genes in the

A

human genome.

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8
Q

Codon redundancy makes the genetic code

A

degenerate.

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9
Q

The human haploid genome is ~3 billion

A

base pairs (bp) long.

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10
Q

Next-Generation Sequencing (NGS) allows high-

A

throughput genome sequencing.

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11
Q

The genome perfectly maps onto the proteome.

A

False – Alternative splicing and RNA editing can modify protein expression.

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12
Q

Exons are always longer than introns.

A

False – Introns are often much larger than exons.

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13
Q

The genetic code is universal across all living organisms.

A

True – Although slight variations exist, the genetic code is nearly universal.

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14
Q

The first genome sequenced was bacterial.

A

True – The first complete genome sequenced was for a bacterial species.

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15
Q

The process of removing introns from pre-mRNA is called __________.

A

A: Splicing.

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16
Q

A DNA sequence that marks the start of transcription is called a __________.

A

A: Promoter.

17
Q

The enzyme that synthesizes RNA from a DNA template is __________.

A

A: RNA polymerase.

18
Q

The sequence of three nucleotides in mRNA that codes for an amino acid is called a __________.

19
Q

What is the role of tRNA in translation?
A) Forms the ribosomal subunits
B) Carries amino acids to the ribosome
C) Synthesizes mRNA
D) Edits introns out of pre-mRNA

A

A: B) Carries amino acids to the ribosome.

20
Q

Which of the following is NOT a stop codon?
A) UAA
B) UGA
C) AUG
D) UAG

A

A: C) AUG.

21
Q

What technique is used to assemble DNA sequencing reads?
A) PCR
B) Electrophoresis
C) Genome assembly
D) Cloning

A

A: C) Genome assembly.

22
Q

Which chromosome region is typically gene-rich?
A) Heterochromatin
B) Centromere
C) Euchromatin
D) Telomere

A

A: C) Euchromatin.

23
Q

A scientist is analyzing a eukaryotic genome and finds a long DNA sequence without stop codons. What is this region likely to be?

A

A: An open reading frame (ORF).

24
Q

A researcher finds that two organisms share a highly conserved gene. What does this suggest?

A

A: The gene is functionally important and has been maintained through evolution.

25
A mutation occurs in the second position of a codon. What is likely to happen?
A: A non-synonymous mutation, changing the encoded amino acid.
26
Alternative Splicing:
A process where a single gene produces multiple mRNA variants by including or excluding specific exons.
27
Genomic Conservation:
The retention of DNA sequences across species due to evolutionary importance.
28
Bioinformatics:
The use of computational tools to analyze and interpret biological data, particularly large genomic datasets.
29
Proteomics:
The study of the full set of proteins expressed by a genome, including their functions and interactions.