Genetics - general/chromosomal Flashcards

1
Q

Choose the most appropriate diagnosis from the following options:
* Porphyria
* Farber disease
* Hunter syndrome
* Prolidase syndrome
* Hartnup disease
* Phenylketonuria
* Hurler syndrome
* Fabry disease

A child with a hoarse voice has swollen and painful joints. There are lipogranulomas under the skin.

A

Correct answer:Farber disease - ASAH1 gene
Explanation:
This is a classic description of Farber Disease, also known as Farber’s lipogranulomatosis (hoarse or weak cry, lipogranulomas and swollen, painful joints). Children may also have hepatosplenomegaly and developmental delay. Farber disease is a rare autosomal recessive condition caused by abnormal lipid metabolism. Lipids accumulate abnormally throughout the body, especially around the joints. Fabry Disease is a rare disorder that presents with neuropathic or limb pain with telangiectasias and angiokeratomas (usually affecting the groin and lower abdomen).

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2
Q

Choose the most appropriate diagnosis from the following options:
* Porphyria
* Farber disease
* Hunter syndrome
* Prolidase syndrome
* Hartnup disease
* Phenylketonuria
* Hurler syndrome
* Fabry disease

A child with a known diagnosis of mucopolysaccharidosis is noted to have melanocytic naevi.

A

Correct answer:Hurler syndrome - IUDA gene on chr4
Explanation:
Hurler syndrome (MPS I) is associated with melanocytic naevi. Melanocytic naevi are also associated with GM1 gangliosidosis type 1 but most commonly, melanocytic naevi occur in otherwise well children. Hunter syndrome (MPS II) is associated with the development of pearly papules.

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3
Q

Choose the most appropriate diagnosis from the following options:
* Porphyria
* Farber disease
* Hunter syndrome
* Prolidase syndrome
* Hartnup disease
* Phenylketonuria
* Hurler syndrome
* Fabry disease

A child with a known diagnosis of mucopolysaccharidosis is noted to have pearly papules.

A

Correct answer:Hunter syndrome - IDS gene
Explanation:
Hunter syndrome (MPS II) is associated with the development of pearly papules. Hurler syndrome (MPS I) is associated with melanocytic naevi. Melanocytic naevi are also associated with GM1 gangliosidosis type 1 but most commonly, melanocytic naevi occur in otherwise well children.

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4
Q

Choose the most appropriate diagnosis from the following options:
* Porphyria
* Farber disease
* Hunter syndrome
* Prolidase syndrome
* Hartnup disease
* Phenylketonuria
* Hurler syndrome
* Fabry disease

A child is poorly compliant with dietary treatment and presents with developmental delay, hypopigmentation and eczema.

A

Correct answer:Phenylketonuria - PAH gene
Explanation:
The textbook image of phenylketonuria is a blonde child with blue eyes, however children with classic PKU tend to just have lighter skin and hair than unaffected family members. They are also at increased risk of eczema, especially if not compliant with phenylalanine reduced diet

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5
Q

Gene associated with: CF

A

Autosomal recessive Cystic fibrosis conductance transmembrane regulator(CFTR); prevalence 1/2500

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6
Q

Gene associated with: sickle cell anaemia

A

Autosomal recessive Beta hemoglobin(HBB)

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7
Q

Gene associated with: albinism, oculocutaneous, type 2

A

Autosomal recessive Oculocutaneous albinism II(OCA2)

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8
Q

Gene associated with: Huntington’s disease

A

Autosomal dominant Huntingtin (HTT)

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9
Q

Gene associated with: myotonic dystrophy type 1

A

Autosomal dominant Dystrophia myotonica-protein kinase(DMPK)

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10
Q

Gene associated with: hypercholesterolaemia AD type B

A

Autosomal dominant Low-density lipoprotein receptor(LDLR);apolipoprotein B(APOB)

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11
Q

Gene associated with: NF type 1

A

Autosomal dominant Neurofibromin 1(NF1)

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12
Q

Gene associated with: NF type 2

A

Neurofibromin 2 (NF2)

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13
Q

Gene associated with: PKD type 1

A

Autosomal dominant Polycystic kidney disease 1(PKD1)

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14
Q

Gene associated with: PKD type 2

A

Autosomal dominant Polycystic kidney disease 2(PKD2)

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15
Q

Gene associated with: haemophilia A

A

X-linked recessive Coagulation factor VIII(F8)

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16
Q

Gene associated with: muscular dystrophy (Duchenne)

A

X-linked recessive Dystrophin(DMD)

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17
Q

Gene associated with: muscular dystrophy (Becker)

A
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18
Q

Gene associated with: Rett’s syndrome

A

X-linked dominant Methyl-CpG-bindingprotein2(MECP2)

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19
Q

Gene associated with: hypophosphatemic rickets, X linked dominant

A

X-linked dominant Phosphate-regulating endopeptidase homologue, X-linked(PHEX)

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20
Q

Gene associated with: Spermatogenic failure, non obstructive, Y linked

A

Y-linked Ubiquitin-specific peptidase 9Y, Y-linked(USP9Y)

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21
Q

Fragile X syndrome

A

X linked, trinucleotide repeat expansion, FMR1 gene

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22
Q

Friedreich’s ataxia

A

FRDA gene, trinucleotide repeat expansion disorder

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23
Q

spinocerebellar ataxia

A

SCA1, SCA 2, SCA3, ATXN1 genes; trinucleotide repeat expansion

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24
Q

Patau - genetics, prevalence, associations, prognosis

A

T13, 1/5000 liveborns, midline defects and normally grown (unlike Edwards); Median survival 10 days, 80% die by 3 months, 92% die by 1 year, Profound intellectual disability in survivors

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25
Edward - genetics, prevalence, associations, prognosis
T18; 1/5500, relationship with AMA and 3:1 F:M; IUGR, horseshoe kidney, rocker bottom feet, fisted fingers, hypertonic, cardiac (>50%), GIT (>75%); Death within first 2 weeks = 50%, 3 months 80%, 12 months 90%
26
Down - genetics, prevalence, associations
T21; 1/800, relationship with AMA, trisomy then translocation then mosaic; cardiac 50% (AVSD), hypotonia, poor moro, OA axial instability, transient leukaemia/AMKL, AML, duodenal atresia (12%)
27
Klinefelter - genetics, prevalence, associations, prognosis
47 XXY, 1/600 males, normal phenotype and go unrecognized for life OR learning difficulty in childhood OR delayed puberty at adolescence OR infertility as adult; primary hypogonadism, gynaecomastia, small testes, low libido, normal intelligence but reduce IQ behavioural phenotype, 55% MV prolapse, tall stature w long legs and long arms, eunuchoid body habitus; Increased morbidity in later life from pulmonary diseases, cancers (including breast), diabetes, SLE (extra X chromosome)
28
Turner - genetics, prevalence, associations, prognosis
45 XO; 1/5000 (most spont abort), monosomy (45%) or mosaicism (50%); Short stature (95-100%) Growth failure (90-95%) Infertility (95%) Ovarian failure (90%) Increased upper: lower segment (>90%) Defective dental development (75%) Recurrent otitis media (50-70%) SNHL (50% by adulthood) Cardiac malformations - long transverse aortic arch, aortic root dilatation, bicuspid aortic valve, coarctation (50%); Often in neonatal period presents with oedema of hands/feet, resolves by 2 years but an recur at any age; 7. Complications: ↑ risk of autoimmune problems (hypothyroidism, coeliac disease), risk of aortic dissection
29
Isochromosome X
Isochromosome for the long arm of the X chromosome (isoXq) = the short arm (p) is deleted and replaced with an exact copy of the long arm (q). One of the most common structural sex chromosome abnormalities. Not associated with increased paternal age
30
Jacobs syndrome
47 XYY, 1/1000; Tall stature, mild delay in motor and language, normal puberty + fertility. NO increase in aggression
31
Metafemale syndrome
47 XXX; Most common sex chromosome abnormality in females; Usually incidental diagnosis; May have slightly lower IQ 15-30 than siblings
32
48 XXYY
* Tall with adult height >6 feet * Eunuchoid habitus – long legs, sparse body hair * Small testicles and penis * Hypergonadotropic hypogonadism + gynaecomastia * IQ 60-80 – delayed speech
33
48 XXXY
* Average or tall stature * Ocular hypertelorism, flat nasal bridge, radioulnar synostosis, fifth-finger clinodactyly * Small penis and testicles * IQ 40-60 – severely delayed speech
34
49 XXXXY
* Microcephaly with short stature * Ocular hypertelorism, flat nasal bridge, Upslanting palpebral fissures * Bifid uvula, clef palate, heart defect (PDA), radioulnar synostosis, genu valgum, pes cavus, fifth finger clinodactyly, hypotonia with lax joints * Small genitalia * Hypergonadotropic hypogonadism
35
Pentasomy X
49 XXXXX * ID – always present * Craniofacial, cardiovascular and skeletal abnormalities
36
45X/46 XX mosaicism
* Most common sex chromosome mosaicism diagnosed by amniocentesis + prenatal karyotype * Mild clinical features of Turner syndrome * Many women undergo spontaneous puberty and are fertile
37
45X/46XY mosaicism
* Wide phenotypic spectrum * Phenotypic females with typical or atypical Turner syndrome * Ambiguous external genitalia + asymmetrical gonads (ie. mixed gonadal dysgenesis) * Male phenotype with incomplete masculinisation
38
Marfan syndrome
FBN1
39
Wilsons
ATP7B
40
Tuberous sclerosis
TSC1 and TSC2 (more common)
41
Anti-a-trypsin
serpina 1
42
Alagille
JAG1, NOTCH2
43
Peutz Jeugher
STK11
44
Hirschsprungs
RET
45
Dravet
SCN1A
46
Hereditary pancreatitis
PRSS and SPINK1
47
CCHS
PHOX2B
48
Albright hereditary osteodystrophy
GNAS
49
Turner
SHOX
50
X-linked dominant disorder incontinentia pigmenti
NEMO
51
APS1/APCED
AIRE
52
Trisomy 21 AML
GATA-1 mutation
53
Leukaemia
RUNX1
54
Fanconi anaemia
FANCA-FANCW
55
mTOR pathway mutation epilepsy (FFEVF)
NPRL3
56
Severe viral illness following vaccination
IFNAR1
57
Chronic granulomatous disease
CYBB, X-linked
58
SCID
L2RG
59
Turner short stature gene
Short Stature Homeobox (SHOX) insufficiency
60
Normal height velocity
2-4 yo = < 5.5cm/yr 4-6 yo = < 5cm/yr 6yo-puberty = < 4cm/yr for boys + < 4.5cm/yr for girls Puberty = 9.5cm for boys, 8.5cm for girls (a. 2-4 years = HV >9 cm/year b. 4-6 years = HV >8.5 cm/year c. 6 years – puberty i. Boys HV > 6 cm/year ii. Girls HV > 6.5 cm/year) - this is >95th centile
61
GH deficiency
GH1 (chr 17) Respond well to recombinant GH
62
GH insensitivity
GHRH (release hormone receptor) mutation - type 1: AR, no response to stimulation - type 2: AD - type 3: x linked +n hypogammaglobulinaemia
63
GH insensitvity
GHR (receptor) mutation (Laron syndrome)
64
Early onset obesity
MC4R
65
Genetic causes of craniosynostosis
i. Crouzon/ Apert/ Carpenter/ Chotzen/ Pfeiffer
66
Crouzen
FGFR2 AD but linked with advanced paternal age Brachycephaly, midface hypoplasia, proptosis, hydrocephalus, optic atrophy
67
Apert
FGFR2, AD Brachycephaly/plagiocephaly (coronal) - coronal, sagittal and lambdoid sutures Midface hypoplasia, exopthalmos, symmetrical syndactyly, hydrocephalus, ID
68
Pfeiffer
FGFR2 but can be FGFR1, AD Skull deformity (scaphocephaly + brachiocephaly), midface hypoplasia, Hypertelorism, prominent eyes, mild exophthalmos, small nose Partial syndactyly – webbing fingers/toes, deviated broad and short thumb/big toe 3 types Type 1: mildest, normal IQ Type 2: clover leaf skull (Kleeblattschadel), severe proptosis Type 3: as for type 2 without cloverleaf skull
69
Carpenter
FGFR2, AR Cloverlead/turricephaly, prominent metopic ridge, midface hypoplasia Polydactyly and syndactyly
70
OCD
SLC1A1
71
IPEX
FOXP3
72
Juvenile neuronal ceroid lipofuscinosis
CLN3
73
Ewings
t(11:22) EWSR1:FLI1
74
Alveolar rhabdomyosarcoma
t(1;13) or t(2;13), PAX-FKHR
75
Neublastoma
MYCN amplification = poor prognosis PHOX2 = breathing problem, constipation
76
Retinoblastoma
RB1, 2 hit theory
77
Rhabdoid brain/kidney (ATRT)
SMARCB1 = loss of INI1, germlin 35%, poor prognosis
78
Li Fraumeni
TP53, germline
79
t(8;14)
Burkitts or B-ALL
80
22q12 EWSR1 - not always Ewings
Can be other sarcomas
81
Paediatric small round blue cell (solid) tumours
Ewings, neuroblastoma, rhabdomyosarcoma, medulloblastoma, Wilms, retinoblastoma, anaplastic hepatoblastic - can invade marrow and cause BM failure
82
Hypotonia, SOB, FTT, macroglossia, cardiomegaly - what disease and test
Pompes disease - alpha glucosidase enzyme glycogen storage disease type 2
83
Smith-Lemli-Opitz syndrome
D HCR7 mutation