Genetics Flashcards
What testing is recommended for all people?
Aneuploidy screening, CF, SMA
What are the components of a first trimester screen?
PAPP-A
Free B-hCG
AFP
Nuchal translucency
What is the technique for an NT scan?
Margins of NT clear Fetus in mid-sagittal plane Fetus occupies majority of image Fetal head in neutral position Fetus observed away from amnion Calipers used Horzontal crossbars placed correctly (perpendicular to long axis) Measurement at widest NT space Measure 3x and report largest measurement CRL 45-84mm
Differential diagnosis for NT of 4.0mm
Chromosomal malformations (aneuploidy) Structural malformations (heart, skeletal dysplasia) Other genetic syndromes (noonans, SLOS)
How do you counsel a patient with a thickened NT?
Increased risk of: genetic disorders structural malformations miscarriage fetal demise If genetic testing, echo, and anatomy are normal, then 95% will have a normal outcome
What would you offer a patient with an NT of 4.0mm?
Invasive testing (karyotype / microarray)
Noonans
Targeted early anatomy
….
In patients with a thickened NT, but normal karyotype/array/noonan, normal anatomy and normal fetal echo. What is the likelihood of a normal outcome?
95%
How do you counsel a patient about prenatal genetic testing options?
Serum screening is non diagnostic and can have both false positives and false negatives
Women who desire definitive information about chromosomal conditions in their pregnancy should be offered the option of amniocentesis or CVS.
In your practice, for whom do you recommend cell free DNA screening?
All patients
How do you counsel the low risk patient who desires cell free DNA screening?
cfDNA is a screening test, and both false positive and false negative results occur.
This is particularly true in lower risk women, in whom a positive test is more likely to be a false positive.
Women who desire definitive information about chromosomal conditions in their pregnancy should be offered the option of amniocentesis or CVS.
What is sensitivity of cell free DNA for T21?
What is the sensitivity of cf DNA for T18?
T13?
T21: 99%
T18: 97%
T13: 97%
For a 35 yo, What is PPV of cell free DNA for T21?
T18?
T13?
80%
40%
20%
For a 35 yo, What is NPV of cell free DNA for T21?
T18?
T13?
> 99% for all
How does age impact the PPV of cell free DNA screening for T21?
Increases with increasing gestational age, due to an increasing prevalence
When you perform an amniocentesis for genetic testing, what do you order?
microarray
other testing as needed
What is a microarray?
It is high resolution whole genomic sequencing technique using DNA primers to bind complimentary DNA
Can identify problems detected by conventional karyotype as well as small micro deletions or duplications.
What is the benefit of a microarray on top of a karyotyoe in an anomaly?
6% more abnormal genetic findings when we look at microarray
What is the significance of a cell free DNA result that states “low fetal fraction”?
Can be an abnormality the test cannot pick up
Can also have a false negative
What is fetal fraction dependent on?
Gestational age BMI Medication exposure (lovenox, decreases it) Maternal conditions Singletons / Twins
How do you counsel regarding invasive testing / aneuploidy screening?
Discuss the risks and benefits of diagnosis
Compare other screening tests
Discuss the detection rate of aneuploiides other than T21
and the type and prognosis of the aneuploidies likely to be missed by serum screening
Describe how you perform an amniocentesis?
Skin cleansed with iodine based solution
Ultrasound guidance used continuously
Transabdominal aspiration of fluid (20-30cc)
At what gestational age can you perform an amniocentesis?
15-16 or higher (when chorion and amnion fuse)
What are the risks of amniocentesis?
Infection
Rupture of membrane
Bleeing
Pregnancy loss (1/1000)
Advantages of CVS?
Disadvantages ?
Timing?
Advantages; Earlier information
Disadvantages: Confined placental mosaicism Cannot test for NTDs Maternal cell contamination Cannot examine methylation (fragile x)
Timing: 10-14 weeks
What are the risks of CVS?
What are the risks of performing a CVS prior to 10 weeks?
Bleeding
Rupture of membranes (<1%)
Infection (<1%)
Pregnancy loss (1/200-1/300)
Prior to 10 weeks: limb defects
Contraindications to transcervical CVS?
Vaginal infection (Chlamydia /gonorrhea)
Active herpes
Low lying myoma
35 yo G1 with increased NT
CVS shows 46,XX [10], 47,XX +14 [20]
How do you counsel her about this test result?
Can be normal with placental mosaicism
Can be abnormal
Or baby could be mosaic
How do you counsel a patient with suspected mosaic trisomy of fetus?
Cannot be sure which cells are mosaic (skin, brain, heart, etc…)
So we don’t know the severity
Can be anywhere from as severe as a full trisomy vs. a milder form
No way to be sure
What are the phenotypic features of T21?
Flattened face Small ears Short neck Outside corners of eyes are pointed upward Narrow high arch palate Single crease across the palms Sandal gap feet
What are soft markers for T21 on US?
Thickened nuchal fold Absent nasal bone Short limbs Pyelectasis Echogenic bowel Echogenic intracardiac focus Single umbilical artery
Which soft marker carriest the highest likelhood for T21?
Nuchal fold (LR of 11-18)
How do you counsel a patient at 12 weeks with confirmed T21?
Expectant management verses pregnancy termination Increased risk of pregnancy loss Increased risk of anomalies Varying degree of intellectual ability Increased risk of Leukemia
How do you counsel a patient at 12 weeks with confirmed T21 and hydrops?
Prognosis is grave, 90% risk of fetal death.
Offer termination of pregnancy
What is the likelhood of spontaneous abortion for a fetus with T21 and hydrops?
Very high
What % of first trimester spontaneous abortions are related to T21?
~10%
Differential diagnosis for 1st trimester cystic hygroma?
51% have an abnormal karyotype #1 Trisomy 21 #2 45X also possible other trisomies, triploidy, noonan
What % of fetuses with a cystic hygroma in the first trimester will be diagnosed with T21?
Turners?
T18?
T21: 33%
Turner: 30%
T18: 20%
Why do we use Multiples of the median?
Gives reference values across multiple gestational ages
Quad screen results in: T21
Increased: Inhibin A, hCG, decreased: AFP, estriol
*say Hi
Quad screen results in: T18
All are low
Quad screen results in: T13
All are low
Quad screen results in: Omphalocele, Gastroschisis, twins, NTD
Increased AFP
What condition should be suspected with exremely low Estriol (<0.15 MoM)?
Smith lemli opitz
X linked iccthyoses (Steroid sulfatase deficiency)
What does aneuploidy screening not find?
translocations, inversions, ring chromosomes, single gene mutation
If CfDNA shows mosaic for 46xx and 45xo, what are the possible reasons?
(1) Fetus with mosaic monosomy x
(2) Mom with mosaic monosomy x
(3) Confined placental mosaicism
What is the recurrence risk of a fetus with Mosaic 45Xo?
Test the mom and dad for mosaicism
If negative, discuss the risk of gonadal mosaicism
What is the best aneuploidy screening test for a patient with leg cancer?
Amniocentesis
if not, can do quad screen
With active cancer, can have aneuploid cell turnover
Approach to a patient with Multiple aneuploidies on cfDNA with no known cancer?
Blood smear, physical exam, imaging looking for cancer
Can you do cell free DNA in twins?
Yes, but there are limitations
Positive results but cant be sure which baby is affected
No method of aneuploidy screening that includes a serum sample is as accurate in twin gestations as it is in singleton pregnancies
If fetal T21 is suspected, how do you counsel the patient regarding additional testing options?
CVS vs. amniocentesis depending on gestational age
Postnatal testing
Who should be offered cell free DNA screening?
All patients
Limitations of cell free DNA screening?
Low fetal fraction Confined placental mosaicism Co-twin demise (vanishing twin, false results) Tumors Sex discordance maternal deletion/duplication maternal mosaicism
How accurate is cell free DNA screening in the detection of fetal T21?
It is the most accurate screen for trisomy 21
What can cause False positive results for cfDNA?
Maternal malignancy
Maternal karyotype abnormality
Placental mosaicism
Demise of co-twin
What does a failed cfDNA mean?
Increased risk for aneuploidy or another genetic abnormality
What are possible explanations for cell free DNA results indicating high risk for T21?
Mosaic placenta Aneuploid placenta Aneuploid fetus Mosaic mom False positive Resorbed twin Maternal malignancy
How do you counsel a 39 yo patient with a positive cell free DNA result for T21?
High likelihood its a true positive >90%
Can confirm with invasive testing
How do you counsel a 29 yo patient with a positive cell free DNA result for T21?
Medium likelhood its a true positive 50-60%
Can confirm with invasive testing
What are the most common anomalies in a fetus with T21?
AVSD
What causes a double bubble sign on US?
Duodenal atresia
Can a microarray detect T21?
Yes, by detecting copy number variants
What is cytogenetic analysis?
Need live rapidly growing cells (WBCs or amniocytes)
Culture
Stimulate cells to divide
Arrest in metaphase
Treat with solution to break open cells
Chromosomes fixed, spread on slides and stained
What is FISH?
Fluorescence in situ hybridization
Chromosome specific probes
Benefits of FISH?
Disadvantages?
Quick (24-48 hours)
Can be performed on non-dividing interphase
Disadvantages:
Can have false negatives
Not diagnostic
What are the benefits/ disadvantages of a Karyotype?
Chromosomal rearrangements
Large deletions / duplications
Balanced structural rearrangements
Disadvantages:
Miss microdeletions / microduplications
Need live cells that are able to grow
What advantages does a fetal karyotype have over microarray in a fetus with T21
Microarray cant tell you if you have 3 separate copies or 2 copies attached to each other, and this is important for recurrence counseling