genes to ecosystems Flashcards
where are shallow water and coral ecosystems distributed
around the tropics
what is the estimation of the total number of marine species and what proportion of these are coral species
1.5 million - 50% of which are coral species
why do Scottish corals cope better than tropical corals
they are not as sensitive to water temperature fluctuation
ecosystems are in a constant state of …………….
flux
what are the steps of reef radiations in the cenzoic
- mass extinction
- post extinction time of anoxia and changes in sea water chemistry – coral and reef gap
- stony corals present in shallow water carbonates but not as reef builders - reef recovery
- adaptive radiation
- reef extinction
what is adaptive radiation
when organisms diversify rapidly from and ancestral species
what do major coral extinction events correspond to
rapid cataclysmic environmental changes
where do corals live
in shallow warm water usually between late 20-late 30 C
what is the temperature of corals usually when they are bleaching
late 30s
describe the nutritional content of waters that are undergoing coral bleaching
nutrient poor with poor oxygen content
what are corals and what do they feed on
cnidarians and they feed on zoo plankton
what organism have coral formed a facultative endosymbiotic relationship with and what do they provide them with
zooxanthellae dinoflagellate - they provide coral with vital additional nutrients
90% of all algal nutrients are used by coral including 2 essential amino acids
what is facultative endosymbiosis
endosymbiotic - when an organisms lives inside another
facultative - can survive without the relationship for short periods of time
how do algae and coral benefit from the endosymbiotic relationship
algae get a nutrient rich stable refuge
coral get food
are zooxanthellae and coral showing specificity in their relationship
yes - zooxanthellae clades are specific to particular coral families
is the zooxanthellae and coral relationship always mutualistic
no it can turn parasitic - coral bleaching
what is important to note about coral polyps
each polyp is an individual organ
where are the algal dinoflagellates found in the coral
they are found in the gastrodermis of the tentacles of coral polyps
what happens when coral bleaching occurs
- when the dinoflagellates living inside the coral get hot (due to climate change) their photosystems start working too fast and produce ROS which cause damage
- in response, the corals exocytose the symbiont (dinoflagellates) and the coral bleaches as a result
what kind of damage do the ROS produced by dinoflagellates cause
oxidative damage
DNA damage
cell death
give some examples of environmental stresses that can contribute to causing coral bleaching
- CO2 emissions and climate change - sea surface temperatures increase
- ozone depletion - increased solar irradiance
- deforestation
- silt deposition (granule between sand and clay) - can cause anoxia by blanketing corals and preventing them from photosynthesising
- fertilizer run off - can cause algal blooms to grow which use oxygen and cause coral anoxia - overfishing
- prey overabundance - the prey use up a lot of oxygen which causes coral anoxia
what is anoxia
lack of oxygen
mutualistic relationship of coral and algae maintains the ……….
ecosystem
the relationship between coral and algae can become tempestuous, what does this mean
it s no longer mutualistic - it turns parasitic
what does assigning value to ecosystem services provide
it acts as a motivational tool to encourage its conservation
what are services that the marine ecosystem provides
habitat for fisheries tourism biodiversity coastal protection carbon sinks - lots of carbon fixation occurs in coral reefs - corals store carbon in their exoskeletons medicine and drug discovery
why is monetizing ecosystems services important
it is an important means for ecologists and conservation biologists to engage with government and industry
what is an mpa and what does it provide
it is a marine protected area which can provide conservation status and prevent physical damage to reefs and associated animal and plant communities
what percentage of the ocean is no take
0.5%
what percentage of the ocean is protected
4%
can we fish in mpas and no take areas
we can still fish in mpas but not in no take areas
what 2 problems does climate change cause in association with coral bleaching
increased climate change
- increased water temperature
- increased CO2 - causes acidification - exoskeletons are made from calcium carbonate - calcium carbonate dissolves in acid making it difficult for coral to deposit carbon skeletons
are changes in the environment outpacing potential for adaptation and resilience
possibly or we are heading in that direction anyway
which has a higher proportion of protected areas, marine or terrestrial
terrestrial
when talking about pattern and process in an evolutionary context what do we mean
the pattern we see are the changes in the fossil record over time - evolution, and the process is natural selection
we can infer ancestry through ………….
homology
give an example of homology
pakicetus, pig and deer all have the same ankle homology
what results in the sudden adaptive radiation of whales t
an ecological opportunity was presented in the shallow equatorial Tekys ocean which drove natural selection of those that could exploit the nutrient rich environment
terrestrial mammals –> whales
natural selection drive ………….
evolutionary change
what evidence tells us that change is happening
changes overtime in the fossil and gene record and homologies
what model best fits the evolution contained by evidence
natural selection
what were the 6 proposed theories of natural selection before darwins theory came about - indicate which ones were scientifically based and which were religiously based
lamarckianism - science - lose unrequired characteristics - acquired traits are heritable
catastrophism - science - series of catastrophic events defines the fossil record
scalae naturae - religion
mutationalism - science - species emerge in large jumps
orthogenesis - religion
theistic - religion
every species is fertile enough that if all species survived and produced offspring then the population would grow - why is it that populations are mainly stable in terms of size then
despite periodic fluctuations, populations remain roughly the same size even though there is capacity to grow rapidly
this is because the environment is limited
describe darwins theory of natural selection
resources are limited and stay relatively stable over time
a struggle for survival ensues
individuals in a population may vary and much of this variation is heritable
individuals less suited to the environment are less likely to survive and reproduce, whereas those more suited to the environment are more likely to survive and reproduce
variations accumulate over time to form …….. ………..
new species
what did mendel study
inheritance of phenotypic traits by crossing peas
which two rules did mendel develop
- law of segregation
2. law of independent assortment
what is the law of segregation
2 alleles in a pair segregate into different gametes during meiosis
what is the law of independent assortment
random orientation of pairs of homologous chromosomes at metaphase plate of meiosis 1
does selection act upon phenotypes or genotypes
it acts on phenotypes and these phenotypes are determined by the genotype
what are the 4 different types of phenotype distribution
normal distribution
stabilising/purifying selection
directional selection
disruptive selection
what is normal distribution
there is not selection pressure - we see a normal bell curve
what is stabilising/purifying selection
selection against extreme trait values with phenotypic variation lost from the population - the mean trait value stays the same
what is directional selection
selection against mean trait values - mean trait value moves in response to the direction/intensity of the selection pressure
what is disruptive selection
selection against the mean trait- results in multi model trait distribution - 2 humps
what is heritability denoted as in the breeders equation
h^2
what is the heritability of a given trait defined as
the ratio of the genetic variation to the total phenotypic variation
what is phenotypic plasticity
variability against the same genetic background - environment matters - it can be difficult to disentangle environmental and genetic influences on phenotypic variation
what is the heritability equation
h^2=Vg/Vp
how can we directly measure heritability
we can look at how well trait values correlate between populations - how much do we look like our parents
look at graphs of parental trait vs F2 trait - the gradient of the line is the heritability - the closer to 1 the gradient the stronger the heritability
the greater/weaker the heritability of a trait, the faster a species can respond to a selective pressure
greater
what is the breeders equation
R=h^2s evolutionary response (change in the phenotype between generations) = heritability (transmissibility of a phenotype) x selection difference (change in phenotype due to selection)
given that h^2 = 1 and G1 before selection was 4m and G1 after selection was 4.5m what is R (the evolutionary response)
R= h^2 x S = 1 x 0.5 = 0.5 s = 4.5 - 4
some characteristics of sexually dimorphic species could not readily be explained by ……….. …………
natural selection
what are the two methods of sexual selection
Intrasexual - competition between member of the same sex to access mates
intersexual selection - members of one sex choose members of the other sex
if male reproductive success is more variable than females what does this indicate
males are competing for females - strong sexual selection on males
if male and female reproductive success is roughly the same what does this indicate
there is little competition - low sexual selection
If female reproductive success is more variable than males what does this indicate
females compete for males - strong sexual selection on the females
what suggest that humans and apes are related
homology
what are the homologies between apes and humans
large brains, no tail, erect posture, flexibility of hips, ankle, wrist, thumb - all of which have very similar structure
what can we use to determine phylogenetic tree relationships
fossil evidence
how is mitochondrial DNA inherited
it is passed on from females to their children and would die out if someone doesn’t have nay children or if the mother only has sons
how are y chromosomes inherited
they are passed from father to son and die out when a father only has daughters or has no children
going back each generation what happens to the amount of inherited nuclear DNA
for every generation you go back, the shared nuclear DNA halves
what I a molecular clock
technique that uses the mutation rate of biomolecules to deduce the time in history when 2 or more life forms diverged
what do we need to know to estimate how old individuals are in a lineage
generation time and mutation rate
what types of DNA can we use to work out the molecular clock
nuclear/mitochondrial/Y chromosome
DNA differences reflect ………. ……….
evolutionary history
new devices can sequence DNA in as little as ………….
a few hours
what evidence suggests that Neanderthals and modern humans coexisted
fossils and other evidence
describe the timeline of Neanderthal and modern human existence
7 million ya - coalescence time of human and Neanderthal sequences
3 million ya - split of ancestral human and Neanderthal populations
2 million ya - earliest known atomically modern humans
40, 000 ya - earliest modern humans in Europe
30, 000 ya - most recent known Neanderthal remains (extinction)
provide an example of hoe a body can be preserved so that it can still be sequenced a long time after death
frozen - decay happens much more slowly
90% of human variation predates what
leaving Africa
why is variation larger in 300000 chimps than 7 billion humans
chimps are more genetically variable than humans. the chimp population has decreased and is now relatively stable. the population still retains its genetic variability
human population still reflects a much smaller population because it has grown so fast and genetic variability has not caught up
within the UK population do we see a lot of genetic differences
yes there are subtle differences between different areas of the UK but there are more parts of the genome that are the same than different
what is the most isolated human population on earth
Tristan de cuhna
the most recent population of Tristan de cuhna was 264 - what did this population descend from
8 males and 7 females
what caused the population to leave the island
a volcano erupted and the population fled to south Hampton where they were studied from a health point of view
what did they find when they studied the Tristan de cuhna
they found that every sibling were cousins to each other
the y chromosome fell into 2 groups - south western Europe and north western Europe
there were 9 y chromosome haplotypes found
what was found in terms of asthma in the Tristan de cuhna population
23% of the islanders have asthma and 57% show symptoms
it was suggested that 3 ancestors were asthmatic
it is unlikely that this is due to an environmental effect because the environment is very rural and fairly constant
the scientists were able to look for genetic risk factors for asthma by studying the population
due to the ……….. effect, islanders are likely to share the same pre-disposition genes
founder
give an example were certain things attract people of certain ethnicities
100m sprint attracts Jamaicans - 14.5% of sub 10 second 100m runners are from Jamaica
why are Jamaicans good at sprinting
slave trade - the fastest runners from west African descent are from countries most heavily involved in slave trade
culture - Jamaican culture puts its sprinters among the professional elite
how many key genes are there that influence sprinting ability
10
what is the main gene that influences sprinting ability
alpha-actn3 - if you have the null mutant you won’t be a world class sprinter - no top power athletes have the null allele - the product of the gene is involved in actin cross linking in skeletal muscle
what are the point of evolutionary trees
they summarise evolution
what are alleles
different copies of the same gene
what is a species
a group of living organisms consisting of similar individuals capable of exchanging genes or interbreeding
what is a biological species
a group of populations whose members have the potential to interbreed in nature and produce viable fertile offspring
what is a morphological species
distinguishes a species by body shape and other structural features
what is the ecological species concept
defines a species in terms of its ecological niche, the sum of how members of a species interact with the non living and living parts of the environment
what is allopatric speciation
speciation resulting from an external geographical barrier
what is the allopatric founder effect
when a small population becomes isolated and undergoes rapid evolution due to non-random sample of genes, different environment etc. the gene pool is no longer representative of the previous total population so the sub population diverges
what is sympatric speciation
populations may differ in habitat, behaviour, adaptations, assertive mating causing natural selection and divergence
adaptive radiation
process in which organisms diversify rapidly from an ancestral species into a multitude of new forms. a large group species all descend from one ancestor e.g. glalpaegos finches
what is the difference in evolutionary trees between no random and random speciation
random speciation results in reasonably balanced evolutionary trees
non random speciation results in evolutionary trees with a lot more species on one side than the other - this large amount of speciation is adaptive radiation
what are possible causes of adaptive radiation
key innovations (swim bladder, pharyngeal jaw) environmental changes (new habitats) ecological changes (new opportunities)
how can we quickly establish a species
genome sequencing - genes of individuals in the same species are very similar but genes of individuals in different species may show little to no overlap
what is the single most species rich vertebrate group
bony fish
what was the 3rd whole genome duplication
bony fish
why are bony fish buoyant
they have swim bladders
what are bony fish innovative jaw structures
protruding upper jaws
secondary jaws - pharyngeal jaws
what is a swim bladder
the equivalent to the human lung - the gas inside it gives the fish buoyancy
highlight the differences between sharks and piranhas
sharks are very streamline because they need to move constantly so that they don’t sink because they don’t have a swim bladder. the sharks need to be streamline so that their energy use is efficient
piranhas have swim bladders so can just stay still and not sink - they don’t need to be so streamline because they don’t have to move around so much
what is a kinetic skull
mammalian skulls are mostly fused bone and the lower jaw moves
many bony fish skulls have multiple moving parts
what are primitive jaws
no pucker - upper jaws don’t protrude