General Principles Week 1 Flashcards

1
Q

Topic 1 - Cellular Structure and Function

TLO 1.1: Identify cellular organelles and describe each of their functions

Nucleus:

A

Controls cellular activities and houses genetic material.

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2
Q

Topic 1 - Cellular Structure and Function

TLO 1.1: Identify cellular organelles and describe each of their functions

Mitochondria:

A

Produce energy through ATP synthesis

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3
Q

Topic 1 - Cellular Structure and Function

TLO 1.1: Identify cellular organelles and describe each of their functions

Endoplasmic Reticulum:

A

Rough ER synthesizes proteins; smooth ER synthesizes lipids.

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4
Q

Topic 1 - Cellular Structure and Function

TLO 1.1: Identify cellular organelles and describe each of their functions

Golgi Apparatus:

A

Modifies, packages, and distributes cellular products.

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5
Q

Topic 1 - Cellular Structure and Function

TLO 1.1: Identify cellular organelles and describe each of their functions

Lysosomes

A

Contain digestive enzymes for breaking down cellular waste.

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6
Q

Topic 1 - Cellular Structure and Function

TLO 1.1: Identify cellular organelles and describe each of their functions

Peroxisomes

A

Involved in oxidation reactions, particularly fatty acid breakdown.

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7
Q

Topic 1 - Cellular Structure and Function

TLO 1.1: Identify cellular organelles and describe each of their functions

Ribosomes

A

Site of protein synthesis.

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8
Q

TLO 1.1: Identify cellular organelles and describe each of their functions

Vacuoles

A

Storage organelles for various substances.

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9
Q

TLO 1.1: Identify cellular organelles and describe each of their functions

Chloroplasts (in plant cells):

A

Responsible for photosynthesis.

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10
Q

TLO 1.1: Identify cellular organelles and describe each of their functions

Cell Membrane

A

Controls what enters and exits the cell.

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11
Q

Topic 1 - Cellular Structure and Function

TLO 1.2: Explain the basis of the fluid mosaic model of biological membranes and relate the structure to its function

The fluid mosaic model describes cell membranes as a phospholipid bilayer with embedded proteins. Key features:

Phospholipid bilayer

A

Forms the membrane’s basic structure.

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12
Q

Topic 1 - Cellular Structure and Function

TLO 1.2: Explain the basis of the fluid mosaic model of biological membranes and relate the structure to its function

The fluid mosaic model describes cell membranes as a phospholipid bilayer with embedded proteins. Key features:

Fluidity:

A

Allows lateral movement of membrane components.

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13
Q

Topic 1 - Cellular Structure and Function

TLO 1.2: Explain the basis of the fluid mosaic model of biological membranes and relate the structure to its function

The fluid mosaic model describes cell membranes as a phospholipid bilayer with embedded proteins. Key features:

Embedded proteins:

A

Perform various functions (e.g., transport, signaling).

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14
Q

Topic 1 - Cellular Structure and Function

TLO 1.2: Explain the basis of the fluid mosaic model of biological membranes and relate the structure to its function

The fluid mosaic model describes cell membranes as a phospholipid bilayer with embedded proteins. Key features:

Cholesterol

A

Regulates membrane fluidity and stability.

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15
Q

Topic 1 - Cellular Structure and Function

TLO 1.2: Explain the basis of the fluid mosaic model of biological membranes and relate the structure to its function

The fluid mosaic model describes cell membranes as a phospholipid bilayer with embedded proteins. Key features:

Glycoproteins and glycolipids

A

Form the glycocalyx for cell recognition.

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16
Q

Topic 1 - Cellular Structure and Function

TLO 1.2: Explain the basis of the fluid mosaic model of biological membranes and relate the structure to its function

The fluid mosaic model describes cell membranes as a phospholipid bilayer with embedded proteins. Key features:

A

This structure enables selective permeability, cell signaling, and maintenance of cell shape.

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17
Q

Topic 2 – Molecules of Life

TLO 2.1: Identify the four major macromolecules in the human body and their sources

Proteins

A

Sourced from dietary amino acids.

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18
Q

Topic 2 – Molecules of Life

TLO 2.1: Identify the four major macromolecules in the human body and their sources

Lipids

A

Sourced from dietary fatty acids and glycerol.

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19
Q

Topic 2 – Molecules of Life

TLO 2.1: Identify the four major macromolecules in the human body and their sources

Carbohydrates

A

Sourced from dietary simple sugars.

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20
Q

Topic 2 – Molecules of Life

TLO 2.1: Identify the four major macromolecules in the human body and their sources

Nucleic Acids

A

Sourced from nucleotides synthesized in the body or from diet.

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21
Q

Topic 2 – Molecules of Life

TLO 2.2: Describe the major roles of proteins in the human body

Proteins serve as:

A
  1. Structural components (e.g., collagen)
  2. Enzymes catalyzing biochemical reactions
  3. Transport molecules (e.g., hemoglobin)
  4. Hormones (e.g., insulin)
  5. Antibodies for immune function
  6. Cell signaling receptors
  7. Muscle contraction components (actin and myosin)
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22
Q

Topic 2 – Molecules of Life

TLO 2.3: Describe the major roles of lipids in the human body

Lipids function as:

A
  1. Energy storage (triglycerides)
  2. Cell membrane components (phospholipids and cholesterol)
  3. Insulation (subcutaneous fat)
  4. Hormone precursors (steroid hormones)
  5. Facilitators of fat-soluble vitamin absorption
  6. Cell signaling molecules (lipid-based second messengers)
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23
Q

Topic 2 – Molecules of Life

TLO 2.4: Describe the major roles of carbohydrates in the human body

Carbohydrates serve as:

A
  1. Primary energy source (glucose)
  2. Energy storage (glycogen)
  3. Structural components (e.g., ribose in nucleic acids)
  4. Cell recognition molecules (glycoproteins and glycolipids)
  5. Dietary fiber for digestion and gut health
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24
Q

Topic 2 – Molecules of Life

TLO 2.5: Describe the major roles of nucleic acids in the human body

Nucleic acids (DNA and RNA) are crucial for:

A
  1. Genetic information storage (DNA)
  2. Protein synthesis (mRNA, tRNA, rRNA)
  3. Gene regulation (miRNA and other regulatory RNAs)
  4. Enzyme cofactors (e.g., NAD+ and FAD in metabolism)
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25
Q

Topic 2 – Molecules of Life

TLO 2.6: Discuss how dysfunction of macromolecules can result in disease

Macromolecule dysfunction can lead to various diseases:

Proteins

A

Misfolding (e.g., Alzheimer’s) or enzyme deficiencies (e.g., Phenylketonuria)

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26
Q

Topic 2 – Molecules of Life

TLO 2.6: Discuss how dysfunction of macromolecules can result in disease

Macromolecule dysfunction can lead to various diseases:

Carbohydrates

A

Impaired glucose metabolism (diabetes) or glycogen storage diseases

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27
Q

Topic 2 – Molecules of Life

TLO 2.6: Discuss how dysfunction of macromolecules can result in disease

Macromolecule dysfunction can lead to various diseases:

Lipids

A

Cholesterol imbalance (atherosclerosis) or lipid storage disorders (e.g., Tay-Sachs)

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28
Q

Topic 2 – Molecules of Life

TLO 2.6: Discuss how dysfunction of macromolecules can result in disease

Macromolecule dysfunction can lead to various diseases:

Nucleic Acids

A

Genetic mutations (e.g., sickle cell anemia) or DNA repair defects (increased cancer risk)

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29
Q

Topic 3 – Cell Transport

TLO 3.1: Identify cellular transport mechanisms used by a cell to move substances across the membrane and discuss factors that determine the type of transport used

Transport mechanisms:

Passive transport

A

Simple diffusion, facilitated diffusion, osmosis

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30
Q

Topic 3 – Cell Transport

TLO 3.1: Identify cellular transport mechanisms used by a cell to move substances across the membrane and discuss factors that determine the type of transport used

Transport mechanisms:

Active transport

A

Primary active transport, secondary active transport

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31
Q

Topic 3 – Cell Transport

TLO 3.1: Identify cellular transport mechanisms used by a cell to move substances across the membrane and discuss factors that determine the type of transport used

Transport mechanisms:

Vesicular transport

A

Endocytosis, exocytosis

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32
Q

Topic 3 – Cell Transport

TLO 3.1: Identify cellular transport mechanisms used by a cell to move substances across the membrane and discuss factors that determine the type of transport used

Transport mechanisms:

Factors determining transport type

A
  • Concentration gradient
  • Molecule size and polarity
  • Membrane permeability
  • Energy requirements
  • Presence of specific transport proteins
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33
Q

Topic 3 – Cell Transport

TLO 3.2: Explain the differences between passive and facilitated diffusion

Passive diffusion:

A
  • Molecules move directly through the phospholipid bilayer
  • No energy required
  • Limited to small, nonpolar molecules
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34
Q

Topic 3 – Cell Transport

TLO 3.2: Explain the differences between passive and facilitated diffusion

Facilitated diffusion:

A
  • Requires transport proteins (channels or carriers)
  • No energy required
  • Allows passage of larger or polar molecules
  • Can be regulated by the cell
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35
Q

Topic 3 – Cell Transport

TLO 3.3: Explain the difference between primary and secondary active transport using relevant clinical examples

Secondary active transport

A
  • Uses energy from electrochemical gradient created by primary active transport
  • Example: Glucose-sodium cotransporter (SGLT) in kidney tubules (glucose reabsorption)
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36
Q

Topic 3 – Cell Transport

TLO 3.3: Explain the difference between primary and secondary active transport using relevant clinical examples

Primary active transport

A
  • Directly uses ATP for energy
  • Example: Na+/K+ ATPase pump in neurons (maintains resting membrane potential)
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37
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.1: Describe the stages of the cell cycle and the important functions that take place within each one

Interphase

A
  • G1: Cell growth and preparation for DNA synthesis
  • S: DNA replication
  • G2: Preparation for mitosis
38
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.1: Describe the stages of the cell cycle and the important functions that take place within each one

Mitotic phase

A
  • Mitosis: Nuclear division
  • Cytokinesis: Cytoplasmic division
39
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.1: Describe the stages of the cell cycle and the important functions that take place within each one

G0 phase

A

Quiescent or senescent state (optional)

40
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.2: Explain the process of mitosis and describe the important events that take place in each phase

Prophase

A

Chromatin condenses, nuclear envelope breaks down, spindle fibers form

41
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.2: Explain the process of mitosis and describe the important events that take place in each phase

Metaphase

A

Chromosomes align at the metaphase plate

42
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.2: Explain the process of mitosis and describe the important events that take place in each phase

Anaphase

A

Sister chromatids separate and move to opposite poles

43
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.2: Explain the process of mitosis and describe the important events that take place in each phase

Telophase

A

Chromosomes decondense, nuclear envelopes reform, cytokinesis begins

44
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.3: Identify the different types of stem cells in the human body and the structures they can potentially become (unipotent, pluripotent, multipotent and totipotent), and relate their function to therapeutic potential

Totipotent

A

Can form all cell types (e.g., zygote)

45
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.3: Identify the different types of stem cells in the human body and the structures they can potentially become (unipotent, pluripotent, multipotent and totipotent), and relate their function to therapeutic potential

Pluripotent

A

Can form most cell types (e.g., embryonic stem cells)

46
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.3: Identify the different types of stem cells in the human body and the structures they can potentially become (unipotent, pluripotent, multipotent and totipotent), and relate their function to therapeutic potential

Multipotent

A

Can form multiple cell types within a lineage (e.g., hematopoietic stem cells)

47
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.3: Identify the different types of stem cells in the human body and the structures they can potentially become (unipotent, pluripotent, multipotent and totipotent), and relate their function to therapeutic potential

Unipotent

A

Can form only one cell type (e.g., spermatogonial stem cells)

48
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.3: Identify the different types of stem cells in the human body and the structures they can potentially become (unipotent, pluripotent, multipotent and totipotent), and relate their function to therapeutic potential

Therapeutic potential

A

Regenerative medicine, tissue engineering, disease modeling, drug screening.

49
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.4: Justify the importance of maintaining balance between cell division and apoptosis

Balancing cell division and apoptosis is crucial for:

A
  • Tissue homeostasis
  • Proper organ function
  • Prevention of cancer and other diseases
  • Embryonic development
  • Immune system regulation
50
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.5: Describe the process of meiosis
Meiosis consists of two divisions:

Meiosis I

A

Homologous chromosomes pair, crossover, and separate

51
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.5: Describe the process of meiosis
Meiosis consists of two divisions:

Meiosis II

A

Sister chromatids separate

52
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.5: Describe the process of meiosis
Meiosis consists of two divisions:

A

Results in four haploid gametes with genetic diversity.

53
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.6: Compare meiosis to mitosis

Similarities:

A
  • Both involve DNA replication and cell division
54
Q

Topic 4 – Cell Cycle and Cell Division

TLO 4.6: Compare meiosis to mitosis

Differences

A
  • Meiosis produces haploid gametes; mitosis produces identical diploid cells
  • Meiosis involves two rounds of division; mitosis involves one
  • Meiosis includes genetic recombination; mitosis does not
  • Meiosis occurs only in germ cells; mitosis occurs in somatic cells
55
Q

Topic 5 – Introduction to the Genome

TLO 5.1: Describe the major components that make up the human genome

Nuclear DNA

A

23 pairs of chromosomes

56
Q

Topic 5 – Introduction to the Genome

TLO 5.1: Describe the major components that make up the human genome

Mitochondrial DNA

A

Circular DNA in mitochondria

57
Q

Topic 5 – Introduction to the Genome

TLO 5.1: Describe the major components that make up the human genome

Genes

A

Protein-coding sequences

58
Q

Topic 5 – Introduction to the Genome

TLO 5.1: Describe the major components that make up the human genome

Regulatory elements

A

Promoters, enhancers, silencers

59
Q

Topic 5 – Introduction to the Genome

TLO 5.1: Describe the major components that make up the human genome

Non-coding DNA

A

Introns, repetitive sequences

60
Q

Topic 5 – Introduction to the Genome

TLO 5.1: Describe the major components that make up the human genome

Telomeres

A

Protective end sequences of chromosomes

61
Q

Topic 5 – Introduction to the Genome

TLO 5.2: Identify the major enzymes involved in DNA replication and their functions

DNA helicase

A

Unwinds the DNA double helix

62
Q

DNA primase

A

Synthesizes RNA primers

63
Q

DNA polymerase III

A

Main replicative enzyme, extends DNA strands

64
Q

DNA polymerase I

A

Removes RNA primers, fills gaps

65
Q

DNA ligase

A

Joins Okazaki fragments

66
Q

Topic 5 – Introduction to the Genome

TLO 5.3: Compare and contrast the process of DNA replication in eukaryotic and prokaryotic cells

Differences

A
  • Eukaryotic replication is slower and more complex
  • Eukaryotes have multiple origins of replication; prokaryotes have one
  • Eukaryotes replicate linear chromosomes; prokaryotes replicate circular DNA
  • Eukaryotes have telomere maintenance; prokaryotes do not
67
Q

Topic 5 – Introduction to the Genome

TLO 5.3: Compare and contrast the process of DNA replication in eukaryotic and prokaryotic cells

Similarities

A
  • Both use semiconservative replication
  • Both require similar enzymes (helicases, polymerases, ligases)
68
Q

Topic 5 – Introduction to the Genome

TLO 5.4: Explain the process of transcription and translation in a eukaryotic cell

Transcription:

A
  1. Initiation: RNA polymerase binds to promoter
  2. Elongation: RNA synthesis
  3. Termination: RNA release
  4. Post-transcriptional modifications: 5’ capping, 3’ polyadenylation, splicing
69
Q

Topic 5 – Introduction to the Genome

TLO 5.4: Explain the process of transcription and translation in a eukaryotic cell

Translation:

A
  1. Initiation: Ribosome assembly on mRNA
  2. Elongation: Amino acid chain formation
  3. Termination: Release of completed protein
  4. Post-translational modifications: Folding, chemical modifications
70
Q

Topic 6 – Cell Signaling and Communication

TLO 6.1: Define the term receptor and identify the different membrane proteins that can act as receptors
A receptor is a protein that binds to a specific signaling molecule, triggering a cellular response. Membrane proteins acting as receptors:

A
  1. G protein-coupled receptors (GPCRs)
  2. Receptor tyrosine kinases (RTKs)
  3. Ion channel-linked receptors
  4. Enzyme-linked receptors
71
Q

Topic 6 – Cell Signaling and Communication

TLO 6.2: Identify and explain the roles of the major receptor types

A
  1. G protein-coupled receptors (GPCRs): Signal transduction through G proteins
  2. Receptor tyrosine kinases (RTKs): Phosphorylation of target proteins
  3. Ion channel-linked receptors: Direct ion flow across membranes
  4. Enzyme-linked receptors: Catalyze intracellular reactions
72
Q

Topic 6 – Cell Signaling and Communication

TLO 6.3: Explain the role of proteins in cell signaling and communication
Proteins play crucial roles in cell signaling:

A
  1. Receptors: Detect and respond to signals
  2. Signal transducers: Relay and amplify signals
  3. Enzymes: Modify other proteins
  4. Scaffold proteins: Organize signaling complexes
  5. Transcription factors: Regulate gene expression
  6. Ion channels: Control ion flow and membrane potential
73
Q

Topic 6 – Cell Signaling and Communication

TLO 6.4: Distinguish between endocrine, paracrine and autocrine signaling mechanisms and the types of transduction pathways that can be activated

A

Endocrine signaling: Long-distance communication via bloodstream
Paracrine signaling: Short-distance communication between nearby cells
Autocrine signaling: Cell signals to itself. Transduction pathways:
1. cAMP pathway
2. Phosphoinositide pathway
3. JAK-STAT pathway
4. MAP kinase pathway
Each signaling mechanism can activate various transduction pathways depending on the specific receptor and ligand involved.

74
Q

Topic 7 – Enzyme Function and Classification

TLO 7.1: Explain the basic principles of enzyme function
Enzymes are biological catalysts that:

A
  1. Lower activation energy of reactions
  2. Exhibit substrate specificity
  3. Remain unchanged after catalysis
  4. Function optimally under specific conditions (pH, temperature)
  5. Can be regulated by various factors
75
Q

Topic 7 – Enzyme Function and Classification

TLO 7.2: Describe the properties of enzyme kinetics
Key properties of enzyme kinetics include:

A
  1. Michaelis-Menten kinetics
  2. Km (Michaelis constant) and Vmax (maximum velocity)
  3. Lineweaver-Burk plot for determining kinetic parameters
  4. Effects of substrate concentration on reaction rate
  5. Enzyme saturation
76
Q

Topic 7 – Enzyme Function and Classification

TLO 7.3: Describe the different classifications of enzymes and their relative function
Enzyme classifications:

A
  1. Oxidoreductases: Catalyze oxidation-reduction reactions
  2. Transferases: Transfer functional groups between molecules
  3. Hydrolases: Catalyze hydrolysis reactions
  4. Lyases: Add or remove groups without hydrolysis
  5. Isomerases: Catalyze intramolecular rearrangements
  6. Ligases: Join two molecules using ATP hydrolysis
77
Q

Topic 7 – Enzyme Function and Classification

TLO 7.4: Identify key enzyme inhibitors and their clinical relevance

A
  1. Competitive inhibitors: Compete with substrate for active site (e.g., statins inhibiting HMG-CoA reductase)
  2. Non-competitive inhibitors: Bind to allosteric site (e.g., aspirin inhibiting cyclooxygenase)
  3. Irreversible inhibitors: Permanently modify enzyme (e.g., penicillin inhibiting bacterial cell wall synthesis)
  4. Suicide inhibitors: Enzyme converts inhibitor to reactive form (e.g., acyclovir inhibiting viral DNA polymerase)
78
Q

Topic 8 - Cellular Biochemistry

TLO 8.1: Justify the use of glucose as the body’s primary energy source
Glucose is the primary energy source because:

A

Glucose is the primary energy source because:
1. It’s readily available from carbohydrate digestion
2. It can be quickly metabolized for energy
3. All cells can use it
4. It can be stored as glycogen for later use
5. It’s essential for brain function

79
Q

TLO 8.2: Identify the locations of bioenergetic reactions in the cell

A
  1. Cytoplasm: Glycolysis
  2. Mitochondrial matrix: Krebs cycle, fatty acid oxidation
  3. Inner mitochondrial membrane: Electron transport chain, oxidative phosphorylation
  4. Endoplasmic reticulum: Lipid synthesis
  5. Peroxisomes: Fatty acid oxidation (very long-chain fatty acids)
80
Q

TLO 8.3: Define aerobic and anaerobic metabolism and provide bioenergetic examples of each

A

Aerobic metabolism: Requires oxygen for complete oxidation of substrates
Example: Complete glucose oxidation through glycolysis, Krebs cycle, and electron transport chain.
Anaerobic metabolism: Occurs without oxygen
Example: Lactic acid fermentation during intense exercise

81
Q

TLO 8.4: Explain the major steps and products of glycolysis, Krebs cycle and the Electron Transport Chain (ECT)

A

Glycolysis:
1. Glucose → 2 Pyruvate
2. Net production: 2 ATP, 2 NADH

Krebs cycle:
1. Acetyl-CoA → 2 CO2
2. Per cycle: 3 NADH, 1 FADH2, 1 GTP

Electron Transport Chain:
1. NADH and FADH2

82
Q

TLO 8.5: Identify the key enzymes and steps in glycogen metabolism
Key enzymes in glycogen metabolism:

A
  1. Glycogen synthase: Adds glucose units to glycogen
  2. Glycogen phosphorylase: Breaks down glycogen to glucose-1-phosphate
  3. Branching enzyme: Creates branch points in glycogen
  4. Debranching enzyme: Removes branch points during glycogen breakdown

Steps:

  1. Glycogenesis: Glucose → Glucose-6-phosphate → Glucose-1-phosphate → UDP-glucose → Glycogen
  2. Glycogenolysis: Glycogen → Glucose-1-phosphate → Glucose-6-phosphate → Glucose (in liver) or pyruvate (in muscle)
83
Q

TLO 8.6: Provide clinical examples of metabolism disorders

A
  1. Diabetes mellitus: Impaired glucose metabolism
  2. Phenylketonuria: Phenylalanine metabolism disorder
  3. Glycogen storage diseases: Impaired glycogen metabolism
  4. Fatty acid oxidation disorders: e.g., Medium-chain acyl-CoA dehydrogenase deficiency
  5. Urea cycle disorders: e.g., Ornithine transcarbamylase deficiency
84
Q

TLO 8.7: Describe the sequence of reactions involved in the oxidation of fatty acids in the mitochondrion and its regulation

Fatty acid oxidation (β-oxidation):

A
  1. Activation: Fatty acid → Fatty acyl-CoA
  2. Transport into mitochondria via carnitine shuttle
  3. β-oxidation cycle:
    a. Dehydrogenation (FAD → FADH2)
    b. Hydration
    c. Dehydrogenation (NAD+ → NADH)
    d. Thiolysis (CoA-SH)
  4. Acetyl-CoA enters Krebs cycle
85
Q

TLO 8.7: Describe the sequence of reactions involved in the oxidation of fatty acids in the mitochondrion and its regulation

Regulation:

A
  • Inhibited by high levels of acetyl-CoA and NADH
  • Stimulated by glucagon and epinephrine
  • Inhibited by insulin
86
Q

TLO 8.8: Describe the pathway for activation and transport of fatty acids to the mitochondrion for catabolism

A
  1. Activation: Fatty acid + CoA + ATP → Fatty acyl-CoA + AMP + PPi
  2. Carnitine shuttle:
    a. Fatty acyl-CoA + Carnitine → Fatty acyl-carnitine + CoA
    b. Transport across inner mitochondrial membrane
    c. Fatty acyl-carnitine + CoA → Fatty acyl-CoA + Carnitine
  3. Fatty acyl-CoA enters β-oxidation cycle
87
Q

TLO 8.9: Explain the rationale for the pathway of ketogenesis and identify the major intermediates and products of this pathway

A

Rationale: Ketogenesis occurs when glucose is scarce and fatty acid oxidation is high, providing alternative fuel for the brain.

Pathway:
1. Acetyl-CoA → Acetoacetyl-CoA
2. Acetoacetyl-CoA + Acetyl-CoA → HMG-CoA
3. HMG-CoA → Acetoacetate
4. Acetoacetate → β-hydroxybutyrate or Acetone
Major intermediates: Acetoacetyl-CoA, HMG-CoA
Major products: Acetoacetate, β-hydroxybutyrate, Acetone (ketone bodies)

88
Q

TLO 8.10: Describe the three mechanisms used by humans for removal of nitrogen from amino acids before the metabolism of their carbon skeletons

A
  1. Transamination: Transfer of amino group to α-ketoglutarate, forming glutamate
  2. Oxidative deamination: Removal of amino group as ammonia by glutamate dehydrogenase
  3. Urea cycle: Conversion of ammonia to urea for excretion
89
Q

TLO 8.11: Outline the sequence of reactions in the urea cycle including key regulatory steps

A

Urea cycle steps:
1. Carbamoyl phosphate synthesis
2. Citrulline formation
3. Argininosuccinate synthesis
4. Argininosuccinate cleavage
5. Arginine cleavage to urea

Key regulatory steps:
* Carbamoyl phosphate synthetase I (rate-limiting)
* N-acetylglutamate (allosteric activator)

90
Q

TLO 8.12: Define the terms and give examples of glucogenic and ketogenic amino acids

A

Glucogenic amino acids: Can be converted to glucose
Examples: Alanine, Aspartate, Glutamate
Ketogenic amino acids: Can be converted to ketone bodies
Examples: Leucine, Lysine
Some amino acids are both glucogenic and ketogenic (e.g., Phenylalanine, Tyrosine)

91
Q

TLO 8.13: Summarise the sources and use of ammonia in animals, and explain the concept of nitrogen balance

A

Sources of ammonia:
1. Amino acid deamination
2. Bacterial action in the gut
3. Glutamine breakdown in the kidney

Uses of ammonia:
1. Urea synthesis
2. Glutamine synthesis
3. Nucleotide synthesis

Nitrogen balance: The state where nitrogen intake equals nitrogen excretion. Positive balance indicates growth or tissue repair, while negative balance suggests catabolism or inadequate protein intake.

92
Q

TLO 8.14: Identify the essential amino acids and the metabolic sources of the nonessential amino acids

Essential amino acids (cannot be synthesized by humans):

A

Histidine, Isoleucine, Leucine, Lysine, Methionine, Phenylalanine, Threonine, Tryptophan, Valine
Nonessential amino acids
(can be synthesized):
Alanine, Arginine, Asparagine, Aspartate, Cysteine, Glutamate, Glutamine, Glycine, Proline, Serine, Tyrosine

Metabolic sources of nonessential amino acids:

  1. Transamination of keto acids
  2. Conversion from other amino acids
  3. Synthesis from metabolic intermediates (e.g., 3-phosphoglycerate for serine)