General Physiology Flashcards
What are transcription and translation
Transcription - sequence of DNA producing a specific mRNA
Translation - mRNA determining the final amino acid sequence via tRNA in a ribosome
Which enzyme unzips dna during transcription, where?
What are the strands called, which is used to create the mRNA?
DNA polymerase
Nucleus
Sense and anti-sense
Antisense
Nucleotide types and category
Guanine - purine
Cytosine - pyramidine
Adenine - purine
Thymine - pyramidine
Uracil - pyramidine
What are transcription factors?
Function
Proteins that bind to specific DNA sequences
Either promote or repress RNA polymerase
Where does translation occur
What does tRNA bind to specifically
Which way does the sequence get read
Ribosome
Codons
5’ to 3’
What are the special codons that mark key points in translation
Start AUG
Stop UAA, UAG, UGA
Where and how is the amino acid carried on tRNA
What loads it on
At the 3’ end covalently bonded
Aminoacyl tRNA synthetases
How many codon combinations are there?
How many amino acids are there
4^3 = 64
20
Where does the amino acid chain go after translation
What for
To the Golgi
Further processing and refinement then packaging into granules
What are the levels of structures of proteins with link types
Primary - polypeptides chain - peptide bonds
Secondary - specific geometric shape eg beta sheet or alpha helix - hydrogen bonds
Tertiary - unique folded 3d structure - van de valls, hydrogen bonds, etc.
quaternary - combination of more than one polypeptide chain creating fibrous or globular proteins
Structure of haemoglobin
How is it effected in SSD
2 alpha and 2 beta polypeptide chains with an inorganic haem group.
SSD - abnormal beta chain, lock together and thus precipitate forming sickle shaped RBCs
Types of genetic mutation
Substitution - one base for another
Insertion
Deletion
How can cells influence gene expression in other cells
Release of molecules that trigger intracellular signalling in the target cell via extracellular or intracellular receptors
How does oestrogen effect target cells
Crosses cell membrane
Bonds to receptor
Enters nucleus
Binds to DNA
Alters transcription
OR
Binds to g-protein coupled receptor
How does thyroid hormone effect target cells
Enters via transporter proteins
Enters nucleus
Binds to thyroid hormone receptor - unbound this causes transcription repression but bound causes activation
Thickness of cell memebrane
Main functions
7.5 nm
Separation of internal from external
Maintenance of concentration gradients
Control of movement in and out
Maintenance of cell shape
Cell adhesion
Cell signalling
What is the correlation of the structure of phospolipids in cell membranes
What holds the bilayer together
Hydrophilic head
Hydrophobic tail
Thus forms bilayer
Hydrophilic head out thus low permeability to ions and polarised molecules.
Van der waals, hydrogen bonds, non-covalent interactions
Types of protein position on cell membranes
Integral, peripheral, surface
Functions of cell memebrane proteins
Structure
Pumps
Carriers
Ion channels
Receptors
Enzymes
Types of transport across cell membranes and description
Diffusion - net movement of particles down concentration gradient. Simple or facilitated (through carrier protein) tending to equilibrate the gradient
Osmosis - movement of solvent molecules across a semi-permeable membrane from an area of low solute concentration to high solute concentration tending to equilibrate the concentration
Active transport - movement of particles against their concentration gradient requiring energy (primary from atp, secondary from electrochemical gradient)
Endocytosis - cell absorbs molecules by engulfing them
Exocytosis - cells direction excretory vessels out of the cell membrane.
What is a cell receptor, what does it react too?
Molecules that receive specific chemical signals from environment via ligands (peptides, neurotransmitters, hormones, drugs, toxins).
Types of cell receptors
Peripheral membrane proteins - eg elastin
Transmembrane proteins - eg G protein or ligand gated ion channel
Intracellular receptors - eg hormone receptors
How many transmembrane domains do G protein coupled receptors have?
How do they exert their action
How are they deactivated
7
Conformational change on ligand binding allows GDP to be exchanged for GTP of the Galpha subunit
Subunit disassociate to Galpha-GTP and beta-gamma.
Subunits act on effector organs or on ion channels to effect response
GTPase exchanges the GTP back to GDP and all subunits re-associate on the receptor
Examples of ligands for tyrosine kinase receptors
Insulin
Erythropoietin
How do tyrosine kinase receptors work
Ligand binds to extracellular N terminal, beta unit spans membrane, effect exerted by intracellular c-terminal
At the c-terminal kinase enzymes cause phosphorylation. Phosphorylation of tyrosine leads to activations of signal transduction pathways in the cell
How does insulin work via its receptor (very simply)
Binds to tyrosine kinase receptor
Cascade triggers release of vesicle with GLUT transporters to membrane allowing glucose into cell
What are ionotropic receptors
How do they work
Ligand gated ion channels open and close in response to ligand binding
Examples of ligand gated ion channels
Nicotinic ACh receptor
NMDA receptor
GABA receptor
What is the term when a ligand binding site is away from the active site
Allosteric
What does NMDA and GABA stand for
N-Methyl-D-Aspartic acid
Gamma-AminoButyric Acid
Structure of a nicotinic AcH receptor
Function
5 membrane spanning sub units (each made of 4 helical domains) with ion channel centrally, ACH binding sites on the 2 alpha subunits, other units beta gamma and epsilon
Conformational change on both domains bound ACH - Na + Ca flow in and K out down concentration gradients
Structure of an NMDA receptor
4 membrane spanning sub units (each made of 3 full and 1 partial helical domaine) with central ion channel
Glycine binding sites on N2 subunits
Glutamate binding sites on N1 subunits
Transmits sodium and calcium ions.
Structure of a GABA receptor
5 membrane spanning subunits (each with 4 helical domains) around a central channel binding site for benzodiazepines between alpha and beta subunits
Transmits chloride ions
Another name for G protein coupled receptor (broader type)
Metabotropic - a receptor that uses signal transduction through the membrane
Definition of full agonist
Induces a receptors maximal response
Definition of partial agonist
Induces a receptors submaximal response
Definition of inverse agonist
A drug that induces the opposite effect to the intrinsic agonist
Definition of Competitive antagonist
A drug that competes with the intrinsic agonist for the receptor and thus blocks its activity
Definition of non-competitive antagonist
A drug that binds at a different site to the intrinsic agonist and prevents receptor activation
Definition strong and weak acid
Acid - proton donor
Strong - fully dissociates in solution
Weak - partially dissociates in solution
Definition strong and weak base
Base - proton acceptor
Strong - fully dissociates
Weak - does not fully dissociate
What is an acid base buffer
Action
A weak acid and it’s conjugate base (the anionic product of an acid)
Limits the effect of a proton load in any physiological solution
Definition of pH including constituent units
Negative log base 10 of hydrogen ion concentration in nmol/l
What is physiological ph and h+ concentration
7.4
40nmol/l
What is a neutral pH?
Effect of temperature?
pH 7 and hydrogen and hydroxyl concentrations equal. True at 25oC, at 37oC neutral pH is 6.8
pH of:
Gastric juices
Urine
Arterial blood
Venous blood
CSF
pancreatic fluid
Gastric juices 1-3
Urine 5-6
Arterial blood 7.38-7.42
Venous blood 7.37
CSF 7.32
pancreatic fluid 7.8-8
Definitions of acidosis and acidaemia
Acidosis - excess of acid moieties within physiological system
Acidaemia - pH <7.4
What processes are most impacted by deranged pH in the body
Oxidative phosphorylation
Enzyme function
Carrying power of Hb (Bohr effect)
Chemical reactions
Ionic flux
What is the H+ ion concentration at pH
7.4
7.7
7.1
6.8
7.4 - 40nmol/l
7.7 - 20nmol/l
7.1 - 80nmol/l
6.8 - 160nmol/l
What is the main source of body acid production
CO2 from glucose metabolism
What process produces non-volatile acids in the body
Amino acid metabolism
What systems are involved in hydrogen ion control, over what timeframes
Buffer - seconds
Resp - minutes
Renal - hours
Hepatic - hours
Definition of pK
Neg log base10 of the dissociation constant for a chemical reaction
Also happens to be pH at which a buffer is most efficient and at which the system is at 50% ionisation
Blood based buffers and their pK
Bicarbonate 6.1
Histidine on haemoglobin 7.8
Amino/carboxyl in plasma proteins 7.4
Interstitial buffers and their pK
Bicarbonate 6.1
Intercellular buffers and their pK
Proteins - 7.4
Phosphates 6.8
What is the Henderson-hasselbach equation?
pH = pK + log10[A-]/[HA]
How is the Henderson-hasselbach equation derived
H+A <=> HA
k1 [H][A] = k2 [HA] With k being rate constant
[H] = K [HA]/[A] with K being k2/k1
Log10 then -log10 both sides
Log10[H] = log10K + log10[HA]/[A]
-Log10[H] = -log10K - log10[HA]/[A]
Substitute pH and pK
PH = pK + log10[A]/[HA]
Why is the bicarbonate buffer system so effective
Easily regulated components
CO2 by lungs and HCO3 by kidneys
What is the Henderson hasselbach equation for the bicarbonate buffer system
PH = 6.1 + Log [HCO3-] / pCO2 x 0.225
0.225 is the solubility coefficient for CO2
How much CO2 is dissolved in typical arterial blood
5.3 kPa x 0.23 = 1.2 mmol/L
What is the most powerful buffer and provides 75% of all intracellular buffering
Histidine residues on haemoglobin
What is the relationship between buffer systems termed
What is it
Isohydric principle
When in a compartment all buffer pairs are in equilibrium with the same H+ concentration. Only those buffers with a pK within 1 pH unit of that in the solution participate effectively in the buffering of the pH
What is the respiratory response to excess hydrogen ions
Increased CO2
Detected by chemoreceptors in the medulla and carotid bodies
Increased alveolar ventilation
Increased H+ directly on the respiratory centre in the medulla
What is control effectiveness
The ability of a physiological homeostatic mechanism to deal with change in the parameter it controls.
What is the control effectiveness of the respiratory system to hydrogen ion concentration
Example numbers
50-75%
Will deal with 5-7.5nmol of a 10nmol change in H+