Gene therapy Flashcards

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1
Q

Uncommon genetic disorders that cannot be cured

A

Cystic fibrosis
Sickle cell anaemia
Thalassaemia
Duchenne Muscular Dystrophy
Haemophilia A
Familial hypercholesterolaemia
Phenylketonuria
Tay-Sachs disease

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2
Q

Targets of gene therapy

A

Single gene, recessive loss of function - Cystic fibrosis, haemophilia - Therapy would be gene addition/replacement

Single gene, haploinsufficiency - Dyschromatosis Symmetrica Hereditaria (DSH) - Gene addition

Single gene, dominant negative - Huntington disease - allele silencing/replacement

Multi-gene or acquired - Cancer, heart disease, rheumatoid arthritis - Addition of therapeutic gene

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3
Q

What rescued chronic non-ischemic heart failure in minipigs?

A

Cardiac bridging integrator 1 gene therapy

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4
Q

Gene therapy is used to treat…

A
  • Mostly cancer
  • Also genetic disease, infection etc
  • Treatment been used to treat haemophilia, HIV, multiple myeloma
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5
Q

What types of genetic diseases are treated using gene therapy

A

Metabolic disease, eye disease, blood coagulation disorders, immunodeficiency, neuromuscular disease, haemoglobinpathy

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6
Q

Types of gene therapy

A

in vivo:
- Single step process
- Vector administered directly to patient
- Targeted to specific organ/tissue (route of administration or specificity of vector)

ex vivo:
- Two step process
- Cells removed from patient
- Vector added to cells in vitro
- Engineered cells returned to patient
- May be combined with (stem) cell based therapy

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7
Q

Barriers to gene therapy

A
  1. Neutralising antibodies bind to antigen on virus
  2. Uptake, transport and uncoating of virus

3.

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8
Q

Vectors for gene therapy

A
  • Adenovirus
  • Adeno-associated virus
  • y-Retrovirus (e.g. Moloney Murine Leukaemia Virus-derived)

-Lentivirus (e.g. HIV derived)

  • Routine plasmids
  • Mini-circles
  • Transposons
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9
Q

In vivo gene therapy pros/cons

A
  • Difficulty of delivery
  • Accessible organs - lungs, skin, muscles
  • Less accessible - liver, retina, brain
  • Vector - adenovirus, adeno-associated virus, some use of retroviral vectors
  • Treatment of single gene disorders and acquired disease
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10
Q

What are the advantages of adenoviral vectors

A
  • Large capacity - up to 30kb if helper virus provided
  • Easily purified
  • Infects broad range of cell types
  • Efficient transduction
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11
Q

Disadvantages of adenoviral vectors

A
  • Common cold virus - high incidence of neutralising antibodies
  • Capsid proteins in highly immunogenic
  • Potentially fatal inflammatory response (death of Jesse Gelsinger during OTC trail in 1999)
  • Transient expression of transgene
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12
Q

Adeno-associated virus

A
  • Limited capacity (4.7kb ssDNA genome)
  • Non-pathogenic, minimal immune response
  • rep and cap genes can be replaced with expression cassette
  • Can be used in non-dividing cells - maintained as episome
  • Different serotypes target different tissues
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13
Q

Successful AAV trails

A

Glybera (alipogene tiparvovec) - UniQure - EMA approved, 11-2-12 - targets LPL gene - Major indication is LPL deficiency

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14
Q

AAV case study – Leber’s congenital amaurosis (LCA)

A

Amaurosis (‘darkening’) is vision loss without obvious physical signs

Early-onset blindness

Autosomal recessive (14 genes, including RPE65)

RPE65 codes for retinal pigment epithelium-specific 65kDa protein – required for photoreceptor function

Photoreceptors persist in affected individuals

Vision restored in mouse and dog LCA models using AAV vectors containing RPE65

Successful phase II clinical trials

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15
Q

LCA gene therapy

A
  • Three seperate clinical trials
  • AAV2 serotype capsids directly injected beneath retina
  • Virus taken up by retinal epithelium
  • RPE65 gene expressed from episomal vector
  • Light sensitivity restored - maintained for >3 years
  • Early intervention required for best results
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16
Q

Other AAV target organs - Liver

A
  • Gene factory (plasma protein deficiencies)
  • Metabolic disorders
  • Haemophilia B (factor IX), clinical trials (unsuccessful - immune responses)
17
Q

Other AAV target organs - muscle

A

Delivery by intramuscular injection

Gene factory: trials for haemophilia B, α1 antitrypsin deficiency, LPL deficiency (Glybera)

Repair of muscle disorders: Duchenne’s Muscular Dystrophy

18
Q

Other AAV target organs - Brain

A

Immunoprivileged site
Blood Brain Barrier (AAV9 can cross BBB)
Trials for Parkinson’s disease, Canavan’s disease, Batten’s disease

19
Q

Ex vivo gene therapy

A

Haematopoietic stem/precursor cells
- well established techniques for culture and transplantation
- treatment of single gene blood/immune disorders e.g. SCID, chronic granulomatous disease, thalassaemias
- engineered immune cells (e.g. to target cancer cells)

Epidermal stem cells

Cardiac stem cells

Neural stem cells

20
Q

What is required for long-term transgene expression?

A

Chromosome integration

21
Q

ADA SCID gene therapy

A

γ-Retrovirus vector

Ten children treated

ADA enzyme replacement therapy withdrawn (ensures transduced cells have selective advantage)

Nine patients had immune function restored – no life-threatening opportunistic infections

Cure appears permanent (up to 8 years after treatment)

22
Q

X-linked SCID gene therapy

A

γ-Retrovirus vector

20 patients treated

Immune function restored in all, but 5 patients developed leukaemia

Insertion into LMO2 proto-oncogene – activation acts synergistically with IL-2R to promote cell proliferation

23
Q

Problems with γ-retroviral vectors

A

Preference for insertion near promoters of active genes

Strong enhancer and promoter in LTRs (can activate nearby oncogenes)

Splice donor site downstream of 5’ LTR (can splice to exons of oncogenes)

Solve by using self-inactivating vectors – most of LTRs removed during integration

24
Q

Alternatives to γ-retroviruses

A

Lentiviruses:
LTRs lack strong enhancer
Self-inactivating vectors delete LTRs for additional safety
Clinical trials underway

DNA vectors (simple plasmids/minicircles):
No pre-existing immunity
High capacity
Integration via transposase?
Delivery in vivo very difficult

25
Q

Targeted changes – programmable nucleases

A

Engineer nuclease to recognise specific site (e.g. CRISPR-Cas9)

Double stranded breaks (DSBs) induced

Non-homologous end-joining (NHEJ) leads to gene disruption (e.g. disruption of CCR5 HIV receptor to make resistant T cells)

Gene editing or replacement by homology-directed repair (HDR) – more efficient with staggered cuts

Challenges – avoiding apoptosis, off-target mutations, optimal vector design, need for DNA replication for HDR

26
Q

Use of site-directed nucleases in gene therapy

A
  • Guide RNA designed to match sequence in faulty or abnormal gene
  • Cas9 nuclease cleaves DNA
27
Q
A