Final Review Flashcards

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1
Q

Characteristics of living things

A

1: maintain internal order
2: capable of reproduction
3: capable of growth and development
4: energy use and metabolization
5: maintain homeostasis
6: respond to environment
7: capable of evolution

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2
Q

Vertical Evolution

A

-progression of changes in a lineage
-new species evolve from pre existing species by the accumulation of mutations that are filtered by natural selection
EXAMPLE: horse

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3
Q

Horizontal Gene Transfer

A

genetic exchange between different species, extremely rare.

EXAMPLE: antibiotic resistant bacteria

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4
Q

Binomial Nomenclature

A
  • gives each species a unique scientific name
  • (Genus)(Species)
  • Both italicized, only Genus is capitalized
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5
Q

Genome

A

the complete genetic makeup of an organism. Genomics, analyzes DNA sequences

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6
Q

Proteome

A

Complete complement of proteins that a cell or organism can make. The genome carries info to make the proteome.

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7
Q

Steps of scientific method

A
  • make observations
  • form hypothesis
  • design experiment
  • record data
  • analyze data
  • draw conclusions
  • make new hypothesis
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8
Q

Deductive Reasoning

A

General to specific

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9
Q

Inductive Reasoning

A

Specific to general

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10
Q

Control group

A

Untreated test subject used as benchmark

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11
Q

Experimental Group

A

a group of subjects that are exposed to the variable of a control experiment.

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12
Q

Independent Variable

A

manipulated by the investigator

what is being tested

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13
Q

Dependent Variable

A

Represents the result of the manipulation of the experimental variable.
what is being measured

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14
Q

Atoms

A
  • smallest functional units of matter
  • cannot be further broken down into other substances
  • each specific type of element is a chemical element
  • entire atom has no net electric charge
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15
Q

three subatomic particles and there charges

A
  • protons(+)
  • neutrons(0)
  • electrons(-)
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16
Q

Isotopes

A

atoms of an element that differ in the number of neutrons they carry

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17
Q

How are electrons held in atoms

A
  • electrons held in orbitals
  • each orbital can hold only 2 electrons
  • any atom with more than 2 electrons has more than 1 orbital
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18
Q

Covalent Bonds

A
  • atoms share a pair of electrons
  • occurs between atoms whose outer electron shells are not full
  • strong chemical bonds because electrons behave as if they belong to each atom
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19
Q

Polar Covalent Bonds

A

-oxygen has higher electronegativity
-molecule has partial negative region and partial positive region
shared electrons spend more time near the oxygen atom
EXAMPLE: H2O

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20
Q

Nonpolar covalent

A

bonds between atoms with similar electronegativities, equal sharing of electrons
EXAMPLE:O2

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21
Q

Hydrogen Bonds

A

hydrogen atom (slight + charge) from one polar molecule is attracted to an electronegative atom.

  • do not share electrons
  • individually weak
  • collectively strong bond
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22
Q

Ionic Bonds

A

complete transfer of electrons

-ions are formed when an atom loses or gains an electron

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23
Q

properties of water

A
  • cohesion
  • high heat of vaporization
  • high heat capacity
  • density and temperature
  • solvent
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24
Q

cohesion

A

bonds between molecules stick together, responsible for surface tension and viscosity of water

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25
Q

Acids

A

dissolve in water and release hydrogen ions.

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26
Q

strong acids

A

almost completely dissociate HCL into H_ and cl-

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27
Q

weak acids

A

some of the acid does not dissociate

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28
Q

Bases

A

accept H+ in solutions

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29
Q

Isomers

A

Identical molecular formulas but different structures and characteristics

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30
Q

Structural Isomers

A

Contain the same atoms but in different bonding relationships

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31
Q

Cis-trans Isomers

A

contain the same atoms in different positions around double bonds

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32
Q

enantiomers

A

type of stereoisomer in which the molecules are mirror opposites

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33
Q

dehydration reaction

A

forms macromolecules by removing H2O

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34
Q

hydrolysis reaction

A

breaks polymers back down into monomers hy adding H2O

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35
Q

4 categories of carbs

A
  • monosacharrides
  • disaccharides
  • oligosaccharides
  • polysaccharides
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36
Q

monosaccharides

A
  • simplest form of carbohydrate

- usually 5(pentose) or 6 carbon(hexose)

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37
Q

glucose

A

all living things contain glucose. Glucose is very soluble in water circulates in the blood or fluids of animals where it can be transported accross cell membranes. Once inside a cell enzymes can break down glucose into smaller molecules, releasing energy that was stored in the chemical bonds of glucose.

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38
Q

disaccharides

A

2 monosaccharides joined together by a dehydration reactin that forms what is called a glycosidic bond

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39
Q

polysaccharides

A
  • giant polymers connected by glycosidic linkages
  • sometimes used to store energy
  • some provide structural roles (chitin)
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40
Q

Lipids

A

hydrophobic molecules composed mainly of hydrogen and carbon atoms.

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41
Q

triglycerides “fats”

A

formed by bonding glycerol to 3 fatty acids. Important for storing energy

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42
Q

Steroids

A
  • four interconnected rings of carbon atoms
  • not very water soluble
  • hormones and vitamins
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43
Q

waxes

A

provide a barrier to water loss

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44
Q

saturated fats

A

when all carbons in a fatty acid contain covalent bonds

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45
Q

unsaturated fats

A

contain double bonds

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46
Q

Primary protein structure

A
  • amino acid sequence

- determined by genes

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47
Q

secondary protein structure

A
  • folding in repeating patterns

- either alpha helix or beta pleated sheets

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48
Q

tertiary protein structure

A

folding gives complex three dimensional shape

  • caused by interaction of side chains
  • random coils
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49
Q

quarternary protein structure

A
  • made up of 2 or more polypeptides

- multimeric proteins

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50
Q

purines

A
  • adenine

- guanine

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51
Q

pyrimidines

A
  • thymine
  • cytosine
  • uracil
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52
Q

volume

A

determines the amount of chemical activity in a cell per unit volume

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53
Q

surface area

A

determines the amount of substances that can pass the cell boundary per unit time

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54
Q

Cytosol

A

region of eukaryotic cell outside the organelles but inside the plasma membrane. Includes everything inside the plasma membrane. Central coordinating region for many metabolic activities.

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55
Q

Cytoskeleton

A

structure: network of three different types of protein filaments, actin, intermediate, and microtubules
function: shape & support, movement, tracks for “motor proteins”

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56
Q

Nucleus

A

structure: contains a nucleolus where ribosomes are formed, and surrounded by a nuclear membrane. The nuclear membrane is a double layered endomembrane system. There is also a nuclear envelope consisting of two lipid bilayers that is perforated with nuclear pores
function: contains most DNA, DNA duplications

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57
Q

Ribosomes

A

sites of protein synthesis that can be found assembled in the nucleolus, free in cytoplasm, in mitochondria, bound to the ER, in chloroplasts. Made up of ribosomal RNA

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58
Q

Rough ER

A

studded with ribosomes. sorts and folds, inserts proteins into ER membrane, glycosylation.

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59
Q

Smooth ER

A

Lacks ribosomes, continuous with rough ER, function depends on cell type. detoxification, crb metabolism, calcium balance, synthesis and modification of lipids

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60
Q

Golgi Apparatus

A

structure: stack of 3-23 saccules, vesicles transport materials between stacks
function: sorting, processing, secretion

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61
Q

Lysosomes

A

specialized vesicles, phagocytosis, autophagy, destroy invaders, apoptosis, uses hydrolytic enzymes to break things down

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62
Q

Vacuoles

A

varied functions, central vauoles in plants, contractile vacuoles in plants, phagocytic vacuoles in white blood cells, store wastes and toxic compounds, store antocyanins (pigment)

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63
Q

Peroxisomes

A

structure: contain specific digestive enzymes including catalase
function: breakdown toxic hydrogen peroxide. Found in cells that breakdown large amounts of lipids, liver cells, germinating seeds

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64
Q

Plasma Membrane

A

structure: boundary between cell and extracellular environment.
function: membrane transport, cell signalling, cell adhesion, homeostasis

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65
Q

Mitochondria

A

structure: outer and inner membrane, intermembrane space, mitochondrial matrix, contain there own DNA
function: make ATP, divide by binary fission

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66
Q

Chloroplasts

A

photosynthesis

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67
Q

cell membrane

A
  • bilayered dynamic structure
  • forms boundaries between cells
  • regulates movement of molecules into and out of cells
  • made up of phospholipids, proteins & carbs
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68
Q

Membrane Lipid

A
  • framework is the phospholipid bilayer
  • phospholipids are ampipathic molecules
  • hydrophobic region faces in
  • hydrophilic region faces out
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69
Q

Cholesterol

A
  • only found in animal cells
  • stabilizes membranes at high temps
  • makes more fluids at lower temps
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70
Q

integral membrane proteins

A
  • intrinsic
  • transmembrane proteins
  • lipid-anchored proteins
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71
Q

peripheral membrane proteins

A

-extrinsic
-bound to regions of integral membrane proteins that project out from the membrane
or bound to polar head groups of phospholipids

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72
Q

membrane carbs

A
  • glycosylation
  • recognition signals for other cellular proteins
  • cell surface recognition
  • protective effects
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73
Q

diffusion

A

net movement of molecules or ions from a region where they are more concentrated to a region where they are less concentrated

74
Q

factors influencing diffusion

A
  • size
  • temp
  • steepness of concentration gradient
  • charge
  • pressure
75
Q

Passive diffusion

A

diffusion of a solute through a membrane without transport protein

76
Q

facilitated diffusion

A

diffusion of a solute through a membrane with the aid of a transport protein

77
Q

passive transport

A

does not require an input of energy, going down a concentration gradient

78
Q

active transport

A

requires an input of energy moving against a concentration gradient, primarily using a pump

79
Q

Osmosis

A
  • diffusion of water across a semi permeable membrane

- water diffuses from a region with lower solute concentration to an area with higher solute concentration

80
Q

Endocytosis

A

process by which materials packaged in vesicles are broken down within the cell

81
Q

exocytosis

A

Process by which materials packaged in vesicles are secreted from the cell

82
Q

Laws of thermodynamics

A

1: energy can be transferred and transformed but it cannot be created
2: the total disorder/entropy of the system and its surroundings always increases as the enegy changes (becomes less usable)

83
Q

formula for usable energy

A

G=H-TS
enthalpy (H)
free energy (G)
entropy (S)

84
Q

if delta G is positive

A
  • free energy is required

- this is the case for anabolic reactions

85
Q

if delta G is negative

A
  • free energy is released

- this is the case for catabolic reactions

86
Q

Exergonic

A

Product has less free energy than the reactant, spontaneous

87
Q

Enderonic

A

Product has more free energy than the reactant, requires energy input

88
Q

ATP

A
  • adenosine triphosphate
  • capture, tranfer and storage of energy
  • some of the free energy released by exergonic reactions is captured in ATP which then can release free energy to drive endergonic reactions
89
Q

3 Primary ways in which enzymes work

A

1: orienting substrates, positioning substrates to promote a reaction.
2: inducing strains on substrates
3: adding charges to substrates
* *wokr like lock and key**

90
Q

factors affecting enzymes

A

temp. ph

91
Q

OIL RIG

A

Oxidation Involves Loss

Reduction Involves Gain

92
Q

Redox Reactions

A

an electron is removed from one molecule and added to another.

93
Q

overall goal of cellular respiration

A

to release energy from glucose, and use that energy to make ATP

94
Q

Glycolysis

A
  • 1st metabolic pathway
  • can happen with or wihtout oxygen, steps nearly identical in all species, breaks down glucose into 2 pruvate
  • nets 2 ATP
  • produces 2NADH+H+
95
Q

phases of glycolysis

A
  • phase 1 (steps1-3): energy investment phase invests 2 ATP
  • phase 2 (steps 4-5): Cleavage phase breaks 6 carbon into 2-3 carbon
  • phase 3 (steps 6-10): Energy liberation phase broken down into 2 pyruvate
96
Q

breakdown of pyruvate

A
  • broken down by pyruvate dehydrogenaise
    input: 2 pyruvate, 2 coA, 2 NAD
    output: 2 acetyl coA, 2 NADH+2H+, 2 co2
97
Q

Alcoholic fermentation

A

anaerobic pathway that produces ATP and ethyl alcohol

98
Q

Lactate fermentation

A

Anaerobic pathway that produces ATP and lactate

99
Q

Respiration vs Fermentation

A

When o2 is not available molecules are unable to make ATP using o2 has final electron acceptor, therfore fermentation allows molecules to produce ATP but much less

100
Q

Whats is the purpose of cell signalling

A
  • respond to a changing environment

- cell to cell communication

101
Q

Direct intercellular signaling

A

signal passes through a cell junction from the cytosol of one cell to adjacent cells

102
Q

contact dependent signaling

A

membrane bound signals bind to receptors on adjacent cells

103
Q

Autocrine signaling

A

cells release signals that affect themselves and nearby target cells

104
Q

Paracrine signaling

A

cells release signals that affect nearby target cells

105
Q

Endocrine signaling

A

Cells release signals that travel long distances to reach target cells

106
Q

stages of cell signaling

A
  • receptor activation
  • signal transduction
  • cellular response
107
Q

receptor activation

A

ligand binds to receptor with high degree of specificity. Causes a conformational change that activates the receptor. Once ligand is released receptor is no longer activated.

108
Q

signal transduction

A

signaling molecule binds to cell surface receptor, usually stimulates signal transduction pathways that lead to a cellular response.

109
Q

Cellular Response

A

Alter the activity of 1 or more enzymes. Alter structural protein function, change gene expression

110
Q

second messengers

A
  • relay signals inside cells

- EXAMPLES: cAMP, Ca2+

111
Q

2 advantages of cAMP

A
  • signal amplification

- speed

112
Q

protein kinase

A

enzyme that modifies other proteins by phosphorylation. This phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location or association with other proteins

113
Q

anchoring junctions

A

attach cells to ECM and each other

114
Q

4 types of animal tissue

A
  • epithelial
  • connective
  • nervous
  • muscle
115
Q

collagen

A

structural protein that provides tensile strength (bone, cartilage, tendon, skin)

116
Q

elastin

A

structural protein that provides elasticity, expands and returns to original shape. (lungs, blood vessels)

117
Q

Griffith

A

used bacteria to form a transformation principle

118
Q

Hershey & Chase

A

performed experimen using E.coli, result supported that DNA was the genetic material

119
Q

3 components of DNA structure

A

1: phosphate group
2: penstose sugar
3: nitrogenous bases

120
Q

Levels of DNA structure

A
  • nucleotides
  • form a strand
  • double helix
  • chromosomes
  • Genome
121
Q

DNA replication

A
  1. hydrogen bonds between the two strands are broken

2. new nucleotides covelently bonded to each growing strand via DNA polymerase

122
Q

DNA polymerase

A

-primary replication enzyme that binds to template strand

123
Q

leading strand

A

DNA strand that is in the correct orientation given DNA’s anitparallel nature

124
Q

lagging strand

A

DNA strand that is in the wrong orientation given DNA’s antiparallel nature. During replication, lagging strand must grow small discontinuous pieces known as okazaki fragments

125
Q

Telomerase

A

enzyme that attaches many copies of DNA repeat sequence to the ends of chromosomes, function reduced as organism ages.
-99% of all type of human cancers have high levels of telomerase

126
Q

Central Dogma

A

DNA undergoes transcription to form RNA, then RNA undergoes translation to form protein.

127
Q

3 stages of prokaryotic transcription

A
  • intiation
  • elongation
  • termination
128
Q

What happens in the initiation stage of transcription

A
  • signal factor causes RNA polymerase I to recognize promoter region
  • stage complete when DNA strands separated near promoter to form open complex
129
Q

What happens in the elongation stage of transcription

A
  • RNA polymerase synthesizes RNA
  • template or coding strand use for RNA synthesis
  • synthesized 5’-3’
  • Uracil substituted for thymine
130
Q

what happens in the termination stage of transcription

A
  • RNA polymerase reaches termination sequence

- causes it and newly made RNA transcript to dissociate from DNA

131
Q

splicing (RNA processing)

A

-most genes have one or more introns, spliceosomes remove introns precisely

132
Q

codons

A
  • sequence of 3 bases in an mRNA molecule
  • read in groups of 3
  • most specify a particular amino acid, also start and stop codons
  • degenerate
  • start codon (AUG) defines reading frame, stop codon ends it.
133
Q

tRNA

A
  • cloverleaf structure
  • amino acid binding
  • basically carries amino acids and adds them to the growing protein structure
134
Q

Ribosomes (RNA processing)

A
  • receive amino acids from tRNA and assemble the protein.
135
Q

Why must genes be regulated

A
  • environmental response
  • cellular differentiation
  • organismal development
136
Q

repressors

A

inhibit transcription

137
Q

activators

A

increase the rate of transcription

138
Q

lac operon

A

cluster of genes under transcriptional control that contains genes for lactose metabolism

139
Q

Negative control of lac operon (lactose absent)

A
  • lac repressor binds to lac operator site preventing transcription
  • RNA polymerase can bind but not move
140
Q

Negative control of lac operon (lactose present)

A
  • 4 allolactose molecules bind to repressor and prevent repressor from binding
  • process called induction
141
Q

point mutation

A
  • base substituition

- add or remove a single base pair

142
Q

silent mutation

A

-causes no change

143
Q

missense mutation

A

-changes a single amino acid in a polypeptide
-may not alter function if substituted amino acid is similar in chemistry to original
EXAMPLE:sickle cell

144
Q

nonsense mutation

A
  • changes from a normal codon to a stop codon

- produces a truncated polypeptide

145
Q

frameshift mutation

A
  • addition or deletion of nucleotides (excluding multiples of 3)
  • completely different amino acid sequence downstream from mutation
146
Q

germ-line mutation

A
  • gives rise to gametes

- mutation can occur in sperm or egg cell, or in gamete progenitor cells

147
Q

somatic mutation

A
  • all other body cell besides gametes
  • can occur early or late in development
  • give a genetic mosaic with patches of mutant tissue
148
Q

Nucleotide Excision Repair

A
  • damaged DNA is removed
  • Undamaged strand used for synthesis of complementary strand
  • found in all eukaryotes and prokaryotes
149
Q

oncogenes

A
  • caused by mutation in genes for cell growth signaling proteins
  • promote cancer by keeping the cell division pathway in permanent “on” position
150
Q

what types of mutations have been known to lead to cancer

A
  • missense mutations
  • gene amplifications
  • chromosomal translocations
  • retroviral insertions
151
Q

gene amplifications

A

-increase in copy number results in too much protein

152
Q

chromosomal translocations

A
  • two chromosomes break and switch ends

- can create chimeric genes

153
Q

retroviral insertions

A

-viral DNA inserts into a chromosome putting a viral promoter right next to a proto-oncogene

154
Q

tumor suppressor genes

A

normal role is to prevent cancer growth

155
Q

checkpoint proteins

A

-check the integrity of the genome and prevent a cell from progressing past a certain point in the cycle

156
Q

Cell Cycle

A
  • g1
  • s
  • g2
  • mitosis and cytokinsesis
157
Q

what 3 stages make up interphase

A
  • g1
  • s
  • g2
158
Q

G1 phase

A

the first interval or gap of cell growth, the time before DNA replication when cells engage in their metabolic business

159
Q

S phase

A

the time of synthesis (DNA replication) when the cell prepares to divide

160
Q

G2 phase

A

second interval or group when the cell makes proteins that will drive cell division

161
Q

Phases of mitosis

A

prophase
metaphase
anaphase
telophase

162
Q

prophase

A
  • nuclear membrane disappears, centrosomes migrate, spindle fibers appear
  • DNA coils into chromosomes
163
Q

metaphase

A

-chromosomes line up in middle at metaphase plate

164
Q

anaphase

A

-centromeres divide, sister chromatids migrate to opposite poles, cytokinesis begins

165
Q

telophase

A

-nuclear membranes form, spindle disappears, cytokinesis occurs

166
Q

homologous chromosomes

A

chromosomes with the same length, shape, and set of genes. Each individual receives one from their mother and one from their father.

167
Q

Dominant trait

A

trait that will be expressed

168
Q

recessive trait

A

trait that will be masked by dominant trait

169
Q

allele

A

alternate form of a gene

170
Q

Law of segregation

A

states that alleles separate during gamete formation

171
Q

Law of independent assortment

A

alleles of different genes assort into gametes independently of each other. all possible combinations of factors can occur

**seperate genes for separate traits are passed independently of one another from parents to offspring **

172
Q

polygenic inheritance

A

a situation in which interaction of several gene pairs guides the development of a specific characteristic such as height, skin color and eyesight

173
Q

sex determination

A

determined by specific pair of chromosomes called the sex chromosomes
Males:XY
Females: XX

174
Q

codominance

A

situation in which two different alleles for a genetic trait are both expressed

175
Q

formula for allele frequency

A

allele frequency=# of copies of a specific allele in a population/ total # of all alleles for that gene in a population

176
Q

formula for genotype frequency

A

genotype frequency=# of individuals with a particular genotype in a population/ total # of individuals in a population

177
Q

what is the purpose of the hardy weinberg principle

A
  • shows the relationship between allele and genotype frequencies when a population is not evolving
  • its a theoretical reference point, genetic equilibrium occurs when the allele frequencies of a population do not change
178
Q

what five conditions are required by the hardy weinberg principle

A
  • random mating
  • large population size
  • no mutations
  • no immigration or emigration
  • no selection
179
Q

stabilizing selection

A

intermediate phenotype is favored, selection against extreme phenotypes, stable environment

180
Q

directional selection

A

one extreme phenotype is favored, adjusting to a changing environment

181
Q

disruptive selection

A

two or more extreme phenotypes are selected

182
Q

sexual selection

A

one sex prefers to mate with individuals of the opposite sex that have specific characteristics. These characteristics imply increased fitness