Final Exam Vocab Flashcards
The basic unit from which a living organism is made; an aqueous solution of chemicals, enclosed by a membrane, that has an ability to self-replicate.
cell
Double-stranded polynucleotide formed from two separate chains of covalently linked deoxyribonucleotides. It serves as the cell’s store of genetic information that is transmitted from generation to generation.
DNA
Molecule produced by the transcription of DNA; usually single-stranded, it is a polynucleotide composed of covalently linked ribonucleotide subunits. Serves a variety of informational, structural, catalytic, and regulatory functions in cells.
RNA
Macromolecule built from amino acids that provides cells with their shape and structure and performs most of their activities.
protein
Process of gradual modification and adaptation that occurs in living organisms over generations.
evolution
The total genetic information carried by all the chromosomes of a cell or organism; in humans, the total number of nucleotide pairs in the 22 autosomes plus the X and Y chromosomes.
genome
Instrument for viewing extremely small objects. Some use a focused beam of visible light and are used to examine cells and organelles. Others use a beam of electrons and can be used to examine objects as small as individual molecules.
microscope
The protein-containing lipid bilayer that surrounds a living cell.
plasma membrane
Contents of a cell that are contained within its plasma membrane but, in the case of eukaryotic cells, outside the nucleus.
cytoplasm
Instrument used to visualize a specimen that has been labeled with a fluorescent dye; samples are illuminated with a wavelength of light that excites the dye, causing it to fluoresce.
fluorescence microscope
Large macromolecular complex, composed of RNAs and proteins, that translates a messenger RNA (mRNA) into a polypeptide chain.
ribosome
Instrument that passes a beam of electrons through a specimen to reveal and magnify the structures of very small objects, such as organelles and large molecules.
electron microscope
A discrete structure or subcompartment of a eukaryotic cell that is specialized to carry out a particular function. Examples include mitochondria and the Golgi apparatus.
organelle
An organism whose cells have a distinct nucleus and cytoplasm.
eukaryote
Major category of living cells distinguished by the absence of a nucleus; includes the archaea and the eubacteria (commonly called bacteria).
prokaryote
Microscopic organism that is a member of one of two divisions of prokaryotes; some species cause disease. The term is sometimes used to refer to any prokaryotic microorganism, although the world of prokaryotes also includes archaea, which are only distantly related.
bacterium
Microscopic organism that is a member of one of the two divisions of prokaryotes; often found in hostile environments such as hot springs or concentrated brine.
archaeon
In biology, refers to the prominent, rounded structure that contains the DNA of a eukaryotic cell. In chemistry, refers to the dense, positively charged center of an atom.
nucleus
Long, threadlike structure composed of DNA and proteins that carries the genetic information of an organism; becomes visible as a distinct entity when a plant or animal cell prepares to divide.
chromosome
Membrane-enclosed organelle, about the size of a bacterium, that carries out oxidative phosphorylation and produces most of the ATP in eukaryotic cells.
mitochondrion
Specialized organelle in algae and plants that contains chlorophyll and serves as the site for photosynthesis.
chloroplast
The process by which plants, algae, and some bacteria use the energy of sunlight to drive the synthesis of organic molecules from carbon dioxide and water.
photosynthesis
Labyrinthine membrane-enclosed compartment in the cytoplasm of eukaryotic cells where lipids and proteins are made.
endoplasmic reticulum (ER)
Membrane-enclosed organelle in eukaryotic cells that modifies the proteins and lipids made in the endoplasmic reticulum and sorts them for transport to other sites.
Golgi apparatus
Contents of the main compartment of the cytoplasm, excluding membrane-enclosed organelles such as the endoplasmic reticulum and mitochondria. Also used to refer to the cell fraction remaining after membranes, cytoskeletal components, and other organelles have been removed.
cytosol
System of protein filaments in the cytoplasm of a eukaryotic cell that gives the cell shape and the capacity for directed movement. Its most abundant components are actin filaments, microtubules, and intermediate filaments.
cytoskeleton
A free-living, nonphotosynthetic, single-celled, motile eukaryote.
protozoan
A living thing selected for intensive study as a representative of a large group of species. Examples include the mouse (representing mammals), the yeast (representing a unicellular eukaryote), and E. coli (representing bacteria).
model organism
Describes genes, chromosomes, or any structures that are similar because of their common evolutionary origin. Can also refer to similarities between protein sequences or nucleic acid sequences.
homologous
A molecule that releases a proton when dissolved in water; this dissociation generates hydronium (H3O+) ions, thereby lowering the pH.
acid
The smallest particle of an element that still retains its distinctive chemical properties; consists of a positively charged nucleus surrounded by a cloud of negatively charged electrons.
atom
Small organic molecule containing both an amino group and a carboxyl group; it serves as the building block of proteins.
amino acid
Activated carrier that serves as the principal carrier of energy in cells; a nucleoside triphosphate composed of adenine, ribose, and three phosphate groups.
ATP
Region on the surface of an enzyme that binds to a substrate molecule and catalyzes its chemical transformation.
active site
Describes a protein that can exist in multiple conformations depending on the binding of a molecule (ligand) at a site other than the catalytic site; such changes from one conformation to another often alter the protein’s activity or ligan affinity.
allosteric
Folding pattern, common in many proteins, in which a single polypeptide chain twists around itself to form a rigid cylinder stabilized by hydrogen bonds between every fourth amino acid.
alpha helix
The order of the amino acid subunits in a protein chain. Sometimes called the primary structure of a protein.
amino acid sequence
Protein produced by B lymphocytes in response to a foreign molecule or invading organism. Binds to the foreign molecule or cell extremely tightly, thereby inactivating it or marking it for destruction.
antibody
Molecule or fragment of a molecule that is recognized by an antibody.
antigen
Folding pattern found in many proteins in which neighboring regions of the polypeptide chain associate side-by-side with each other through hydrogen bonds to give a rigid, flattened structure.
beta sheet
Region on the surface of a protein, typically a cavity or groove, that interacts with another molecule (a ligand) through the formation of multiple noncovalent bonds.
binding site
A large aggregate of phase-separated macromolecules that creates a region with a special biochemistry without the use of an encapsulating membrane.
biomolecular condensate
Small molecule that binds tightly to an enzyme and helps it to catalyze a reaction.
coenzyme
Covalent cross-link formed between the sulfhydryl groups on two cysteine side chains; often used to reinforce a secreted protein’s structure or to join two different proteins together.
disulfide bond
A protein that catalyzes a specific chemical reaction.
enzyme
A form of metabolic control in which the end product of a chain of enzymatic reactions reduces the activity of an enzyme early in the pathway.
feedback inhibition
Intracellular signaling protein whose activity is determined by its association with either GTP or GDP. Includes both trimeric G proteins and monomeric GTPases, such as Ras.
GTP-binding protein
General term for a small molecule that binds to a specific site on a macromolecule.
ligand
Enzyme that severs the polysaccharide chains that form the cell walls of bacteria; found in many secretions including saliva and tears, where it serves as an antibiotic.
lysozyme
The end of a polypeptide chain that carries a free a-amino group.
N-terminus
Covalent chemical bond between the carbonyl group of one amino acid and the amino group of a second amino acid.
peptide bond
Linear polymer composed of multiple amino acids. Proteins are composed of one or more long polypeptide chains.
polypeptide chain
Repeating sequence of the atoms (-N-C-C-) that form the core of a protein molecule and to which the amino acid side chains are attached.
polypeptide backbone
The amino acid sequence of a protein.
primary structure
Macromolecule built from amino acids that provides cells with their shape and structure and performs most of their activities.
protein
Segment of a polypeptide chain that can fold into a compact, stable structure and that often carries out a specific function.
protein domain
Enzyme that catalyzes the transfer of a phosphate group from ATP to a specific amino acid side chain on a target protein.
protein kinase
Enzyme that catalyzes the removal of a phosphate group from a protein, often with high specificity for the phosphorylated site.
protein phosphatase
The covalent addition of a phosphate group to a side chain of a protein, catalyzed by a protein kinase; serves as a form of regulation that usually alters the activity or properties of the target protein.
protein phosphorylation
Complete structure formed by multiple, interacting polypeptide chains that form a larger protein molecule.
quaternary structure
Regular local folding pattern of a polymeric molecule. In proteins, it refers to alpha helices and beta sheets.
secondary structure.
Portion of an amino acid not involved in forming peptide bonds; its chemical identity gives each amino acid unique properties.
side chain
A molecule on which an enzyme acts to catalyze a chemical reaction.
substrate
Complete three-dimensional structure of a fully folded protein.
tertiary structure
A family of enzymes (typically multisubunit) that use the energy of ATP hydrolysis to alter the arrangement of nucleosomes in eukaryotic chromosomes, changing the accessibility of the underlying DNA to other proteins.
chromatin-remodeling complex
Specialized DNA sequence that allows duplicated chromosomes to be separated during M phase; can be seen as the constricted region of a mitotic chromosome.
centromere
Complex of DNA and proteins that makes up the chromosomes in a eukaryotic cell.
chromatin
Long, threadlike structure composed of DNA and proteins that carries the genetic information of an organism; becomes visible as a distinct entity when a plant or animal cell prepares to divide.
chromosome
A ring-shaped SMC protein complex that organizes interphase chromosomes into a long series of large chromatin loops; in addition, a special subset of cohesins holds together the sister chromatids after DNA has been replicated.
cohesin
A ring-shaped SMC protein complex that compacts duplicated chromosomes for segregation by forming both loops and loops within loops.
condensin
One of the two main states in which chromatin exists within an interphase cell. Prevalent in gene-rich areas, its less compact structure allows access for proteins involved in transcription.
euchromatin
Highly condensed region of an interphase chromosome; generally gene-poor and transcriptionally inactive.
heterochromatin
One of a small group of abundant, highly conserved proteins around which DNA wraps to form nucleosomes, structures that represent the most fundamental level of chromatin packing.
histone
Enzyme that catalyzes the covalent addition of a small molecule, such as a methyl or acetate group, to a specific amino acid side chain on a histone.
histone-modifying enzyme
Large structure within the nucleus where ribosomal RNA is transcribed and ribosomal subunits are assembled.
nucleolus
Beadlike structural unit of a eukaryotic chromosome composed of a short length of DNA wrapped around an octameric core of histone proteins; includes a nucleosomal core particle (DNA plus histone protein) along with a segment of linker DNA that ties the core particles together.
nucleosome
A large ring-shaped structure that contains two Structural Maintenance of Chromosomes (SMC) protein subunits at its core; the ring these proteins form is large enough for nucleosomes to pass easily through it. Cohesins and condensins are two major types.
SMC ring complex
During protein synthesis, an enzyme that attaches the correct amino acid to a tRNA molecule to form a “charged” aminoacyl-tRNA.
aminoacyl-tRNA synthetase