Final Exam Flashcards
What are the three classifications of carbohydrates?
- Monosaccharides
- Disaccharides
- Polysaccharides
Name the three monosaccharides
Glucose, Fructose, Galactose
Name the three disaccharides and their monosaccharide components
Maltose: Glucose+Glucose
Lactose: Glucose+Galactose
Sucrose: Glucose+Fructose
Name the three polysaccharides
Starch
Glycogen
Cellulose
Aldehyde functional group
Hydrogen, Carbonyl, Carbon
Keton functional group
Carbon, Carbonyl, Carbon
Monosaccharide with an ____ group is an aldose while a monosaccharide containing a ____ is a ketose
Aldehyde; Ketone
What is another name for aldotriose?
Glyceraldehyde
What is another name for ketotriose
Dihydroxyacetone
What are enantiomers
Non-super imposable mirror images
What are diastereoisomers
Not mirror images
How are D and L forms determined?
By the -OH group on the chiral C atom furthest from the carbonyl end (aka the most oxidized end) that determines D or L configuration. If the -OH is on the right then it is D- and if the OH is on the left it is L
Nearly all carbohydrates are members of the D family
What are epimers?
Sugars that are diastereoisomers and only differ in configuration at a single asymmetric center
What are the two possible configurations of monosaccharides?
D and L
What is the general formula of a carbohydrate?
(CH2O)n
An aldehyde plus an alcohol forms what?
A hemiacetal
A ketone plus an alcohol forms what?
A hemiaketal
Alpha is ___ and Beta is ____
down; up
What is an anomer?
An isomer that differs in arrangement of bonds around the hemiacetal carbon
Why does cyclisation of D-glucose give 2 isomers, alpha-D-glucose and beta-D-glucose
When carbonyl group of C1 of D-glucose reacts with C-5 hydroxyl group, a new chiral carbon is created (C1). In the alpha-isomer of the cyclic sugar, the C1 hydroxyl group is below the ring; in the beta-isomer, the C1 hydroxyl group is above the ring
Maltose linkage
Derived from the condensation of glucose and glucose which forms alpha 1,4 glycosidic linkages
Full linkage alpha-d-glucose(1,4)-alpha-d-glucose
Lactose linkage
Derived from the condensation of galactose and glucose to form a B 1,4 glycosidic linkage
Full linkage:
Beta-d-galactose-(1,4)-alpha-D-glucose
Sucrose linkage; anything special about sucrose?
Derived from the condensation of glucose and fructose but the anomeric C of both sugars is used in the formation of the glycosidic bond
*Is a non-reducing sugar b/c anomeric carbons of both glucose and fructose are used – therefore sucrose does not have a free –OH and is not a reducing sugar
Alpha (1,2) glycosidic bond
Alpha-D-glucose-(1,2)-beta-D-fructose
Amylose; composed of & linkages
a linear, unbranched chain of alpha-D-glucose units (up to 4000 units) - alpha-1,4 glycosidic bonds
-has both a reducing and nonreducing end
Amylopectin; composed of and linkages
Has a glucose backbone – branches leading to one reducing and many non-reducing ends
Branches are attached to the main chain from the C1 of one alpha-D-glucose to the C6 hydroxyl group of alpha-D-glucose in the main chain - alpha-1,6 glycosidic bonds
Glycogen linkages
A highly branched molecule structurally similar to amylopectin but has more numerous alpha-1,6 glycosidic linkages (thus higher molecular weight)
-also consists of a single reducing end and numerous non-reducing ends
What is the linkage in cellulose?
Beta 1,4
- cellulose consists of a linear chain of several hundred to thousands of B-D-glucose units
- cellulose is the most abundant polysaccharide
Outcomes of Glycolysis
4 ATP Produced (net gain of 2)
2 Pyruvate
Outcomes of TCA
2 ATP
2 Acetyl CoA
Outcomes of ETC
34 ATP
Which step of glycolysis is the Hexose Stage?
The first half of glycolysis is the hexose stage
Step 1-4 ; Phosphorylation of glucose by hexokinase or glucokinase
Glucose 6 phosphate isomerase catalyzes the isomeraization
of of G6P
Phosphofructokinase phosphorylates F6-P
Clevage of F-1,6 P by fructose bisphosphate aldolase to produce DHAP and G3P
What does the first phase of glycolysis produce? Second?
G3P and two pyruvates
What is the net reaction of glycolysis
Glucose + 2 ADP + 2 NAD+ + 2 Pi —-> 2 Pyruvate + 2 ATP + 2 NADH + 2 H+ + 2 H2O
What are the three possible fates for pyruvate?
In yeast (anaerobic fermentation):
Glucose ->pyruvate->ethanol
In muscle (anaerobic respiration): Glucose -> pyruvate -> lactate
In muscle (aerobic respiration) Glucose -> pyruvate -> acetyl CoA
Two step process to convert pyruvate to ethanol
- pyruvate is decarboxylated to acetaldehyde by pyruvate decarboxylase
- Acetaldehyde is reduced to ethanol by NADH and alcohol dehydrogenase
Equation to convert pyruvate to ethanol
Glucose + 2 ADP +2 Pi + 2 H+ —->
2 Ethanol + 2 CO2 +2 ATP + 2 H2O
What enzyme do mammals lack that yeast do not that allows them to convert pyruvate to ethanol
What happens to pyruvate instead?
- Pyruvate decarboxylase
- Pyruvate converted to lactate where it is then transported to the liver for gluconeogensis
What is the equation for converting pyruvate to lactate
Glucose + 2 ADP +2 Pi ——-> 2 Lactate + 2 ATP + 2 H2O
What are the three irreversible steps of glycolysis?
1,3, and last
Hexokinase
PFK1
Pyruvate kinase
Inhibitors and activators of PFK1
- High ATP = allosteric inhibitor
- High AMP and ADP - allosteric activators
Which steps of glycolysis use ATP
Step 1
Glucose -> G6P
Step 3
Fructose-6-phosphate to fructose 1,6 bisphosphate
Which steps of glycolysis produce ATP
1,3-bisphophoglycerate ->3 phosphoglycerate
Phosphoenolpyruvate to pyruvate
Pyruvate (the end product of glycolysis) must be converted to ____ before it enters the CAC
Acetyl CoA
Each molecule of pyruvate is transported across the _____ mitochondrial membrane into the _______
Inner; matrix
_______ transports pyruvate and H+ from the inter membrane space to the interior space of the mitochondrion
Pyruvate translocase
What enzyme converts pyruvate to acetyl coA; what is the equation?
How many ATP produced?
Pyruvate dehydrogenase
Pyruvate + CoA-SH + NAD+ ——> Acetyl CoA + CO2 + H+ + NADH
2 NADH (3 ATP per NADH) = 6 ATP
Which steps are oxidation steps in the TCA cycle?
4; 3,4,6,8
End products of TCA cycle
3 NADH, 1 FADH, and 1 GTP
What are the irreversible reactions of the TCA cycle
Step 1: Oxidation of acetyl CoA where 2 acetyl CoA condense with 4 OAA to form citrate
Step 3: first oxidation step and formation of alpha ketoglutarate
Step 4: Second oxidation and formation of succinyl CoA
Equation of the citric acid cycle
Acetyl CoA + 3NAD+ + FAD + GDP + Pi + 2H2O —–> CoA-SH + 3NADH + 3H+ + FADH2 + GTP + 2CO2
How many ATP are produced from the CAC
24 total
3 NADH ->9 ATP (3 ATP for each NADH)
1 FADH2 ->2 ATP (2 ATP for each FADH2)
1 GTP -> 1 ATP
Total: 12 ATP per acetyl CoA -> (x2 Acetyl CoA)
=24
Gains of the catabolism of glucose through glycolysis and the citric acid cycle
Oxidation of 2 molecules of acetyl CoA by the citric acid cycle and oxidative phosphorylation produces 24 molecules of ATP
Glycolysis generates: 2 NADH (6 ATP) and 2 ATP = 8ATP
Pyruvate dehydrogenase complex generates 6 ATP
Total of 38 moles of ATP per mole of glucose oxidised to CO2 and water
ETC
The Electron Transport chain is a series of electron carrier in the inner membrane of the mitochondria. Electrons are passed form NADH to oxygen (the final acceptor), moving protons from the matrix to the inter membrane space. FADH also donates electrons to the chain, releasing hydrogen ions into the inter membrane space. Eventually, the high H+ concentration in the inter membrane space causes some of the ions to flow down the concentration gradient and back into the matrix through ATP synthase, producing ATP
What are the two mobile electron carriers in the ETC?
Coenzyme Q (between complexes I and III) and Cytochrome C (between complexes III and IV)
Chemiosmosis
The movement of ions across a semipermeable membrane
Gluconeogenesis
The conversion of pyruvate to glucose from non carbohydrate precursors
*noncarb precursors are first converted to pyruvate
What are the three noncarb precursors
Lactate, amino acids, and glycerol
Net equation for gluconeogenesis
2Pyruvate + 2NADH + 4ATP + 2GTP + 6H2O + 2H+ —>Glucose + 2NAD+ + 4ADP + 2GDP + 6Pi
Which steps of glycolysis are in the triose stage?
The second half
The Pentose Phosphate pathway; produces?
-Divided into oxidative and non oxidative stages
- After conversion to glucose 6-phosphate, glucose can enter the PPP (aka hexose monophosphate shunt)
- PPP runs parallel to glycolysis
Produces NADPH and forms ribose-5-phosphate
In what tissues is the PPP active?
Ones that synthesize fatty acids or steroids
PPP Oxidative stage
Glucose 6-phosphate + 2NADP+ + H2O ———> Ribulose 5-phosphate + 2 NADPH + CO2 + 2H+
PPP Non oxidative stage
Ribulose 5-phosphate —-> 2 Fructose 6-phosphate + Glyceraldehyde 3-Phosphate
Glycogenolysis
Degradation of glycogen
Which end are glucose residues removed from during phosphorolysis
the non reducing end
(only acts on alpha-1,4-linkages
Glycogen ____ stops ____ residues from a branch point with ____ bond and resulting _____ is further degraded by a _______ enzyme
Phosphorylase; 4; alpha 1-6; limit dextrin; glycogen-debranching
______ activity of the glycogen deb ranching enzyme catalyzes the relocation of _____ glucose residues to allow the deb ranching enzymes to _________
Glucanotransferase; 3; remove the remaining alpha 1,6 linked glucose molecule to produce a free glucose molecule and an elongated unbranched chain
What is the end product of glycogenolysis
Glucose-1-phosphate
What happens to glucose-1-p after glycogenolysis?
converted to G6P by phosphoglucomutase
What are the steps to incorporate one G6P into glycogen?
***Glucose converted to G6P by hexokinase
G6P –> G1P (Phosphoglucomutase)
G1P —> UDP-Glucose (UDP-Glucose pyrophosphorylase)
-UDP-Glucose -> Glycogen (glycogen synthase
Role of insulin in blood glucose and glycogen
- fed strate
- B cells
- Increases the rate of glucose transport into muscle and adipose tissue via GLUT 4 glucose transporter
- stimulates glycogen sythesis
Role of glucagon in blood glucose and glycogen
- Alpha cells
- low blood glucose (fasted state)
- Stimulates glycogen degradation
- Only liver cells are rich in glucagon receptors
Adrenaline and role in blood glucose and glycogen
- A catecholamine
- flight or flight
- stimulates breakdown of glycogen to G1P (which is converted to G6P)
- Increased G6P levels increase the rate of glycolysis in muscle and glucose release to the bloodstream from the liver
Glycogen phosphorylase is ______ in the _____ state and glycogen synthase is more active in the _______ state
more active; phosphorylated; dephosphorylated
4 Parts of an amino acid
side chain (R) Amino group (NH2) H Carboxyl group (COOH)
Two stages of amino acid degradation and where?
-In the liver
Stage 1: The alpha amino nitrogen must be removed (via transamination and
oxidative deamination reactions) – amino group eventually ends up as urea
Stage 2: remaining carbon skeletons are then shuttled into central metabolic pathways (eg. Citric acid cycle)
Result of transamination
A new keto acid and glutamate
Which enzyme catalyzes the interconversion of aspartate and alpha ketoglutarate to OAA and glutamate
Aspartate transaminase
What enzyme is often used as a clinical diagnostic test for liver function
Aspartate transaminase (AST)
Which enzyme catalyses the interconversion of alanine and alpha- ketoglutarate to pyruvate and glutamate
Alanine transaminase (ALT)
Which enzyme is useful for screening for liver associated problems
ALT
What compound do transamination and oxidative deamination generate in large amounts
Ammonium ion - NH4+
What are the 3 enzymes of the urea cycle that are located in the cytosol
argininosuccinate synthase, arginase and argininosuccinate lyase
What are the two enzymes of the urea cycle that are located in the mitochondria
ornithine transcarbamoylase and carbamoyl phosphate synthase
Overall reaction of the urea cycle
CO2 + NH4+ + 3ATP + aspartate + 2H2O —> urea+2ADP+2Pi +AMP+PPi +fumarate+5H
In every turn of the urea cycle ___ nitrogens are eliminated 1 from ____ and 1 from ____
2; oxidative deamination of glutamate; alpha amino group of aspartate
What is the committed step in the urea cycle
Biocarbonate ion and NH4 reacting to form carbamoyl phosphate
Fate of ketogenic amino acids
Metabolized to acetoacetate or acetate
fate of glycogenic amino acids
Pyruvate or TCA intermediates
What is the definition of a hormone
A substance that is synthesized and secreted by specialized cells and carried via the blood circulation to target cells
Name 4 sites of hormone secretion
Pineal gland, Hypothalamus, Pancreas, Thyroid Gland