Final Exam Flashcards
Taxonomy of Viruses
What do these suffixes refer to?
- virales
- viridae
- virinae
- virus
- virales: Orders
- viridae: Family
- virinae: subfamily
- virus: genera
Initial classification of viruses is made by ______ and how many of each are of clinical importance?
nucleic acid composition
RNA-14 families
DNA-6 families
Types of viral diseases
- Respiratory
- Enteric
- Exanthematous (skin eruptions)
- hepatitis
- persistent (latent)
Viruses are what type of pathogen?
obligate intracellular pathogen
cannot replicate outside of a host cell
What is tropism?
Viruses are host specific, meaning they have a limited number of hosts they can infect and survive in.
When are you considered contagious with a viral infection?
Varies
norovirus-from the time you display symptoms up yo 3 days after recovery
common cold-2-3 days after symptoms occur and lasts for a week
What is:
Antigenic Shift?
Antigenic Drift?
Antigenic Shift-infrequent major changes in the genetic structure of a virus (possibly incorporating host DNA into its viral genetic structure) creating a completely new virus
Antigenic Drift-minor changes in the genetic structure that occur during replication and this can occur all the time. The resulting virus is similar to the original with similar antigenic properties ( the immune system may still recognize it). Immunity can be lost over time due to the accumulation of the changes.
need for seasonal influenza vaccine
What is a virion?
It is measured in….
virus particle
nanometers
Viruses use ____ to replicate because they cannot _______.
- host cell machinery
- self replicate
Structural components of a virion
Genetic material (DNA or RNA) capsid (made of capsomeres)
Possible:
envelope
glycoprotein spikes
What are capsomeres?
repeating structural subunits that make up the capsid
What is a capsid?
Protein coat that encloses the virus’s genetic material.
genome + capsid=nucleocapsid
What is a virion envelope and what is it prone to?
A lipid membrane that surrounds the capsid of certain viruses.
Prone to drying, thus transmission is via direct contact (prevent exposure to environment)
What are vision glycoprotein spikes?
attached projections on the surface of a virion that aid in stabilization and may have some enzymatic activities.
These projections can change, which also impairs a need for seasonal influenza vaccines.
Modes of viral transmission:
Which one is considered the most common route?
- direct contact
- injection with contaminated fluids or blood
- organ transplantation
- fecal-oral
- respiratory (inhalation is the most common route)
Viral disease progression
1-acquisition 2-attachment 3-penetration 4-uncoating 5-replication 6-macromolecular synthesis 7-assembly 8-release
Viral disease progression
Acquisition
Entry into the body
viruses can enter the body via inhalation, but cause infection elsewhere in the body
Spreads via the blood or lymphatics
Symptoms of disease-due to tissue damage and host immune response
Viral disease progression
Attachment
Recognition/binding to host cell receptors
Tropism-infect only certain tissues due to recognition of limited numbers of host cells
Viral disease progression
Penetration
Process of entering host cell
Mechanism(s)
- fusion of viral envelope with host cell membrane
- penetrating host cell membrane with tail
Viral disease progression
Uncoating
releasing viral genetic material into the host cell
Viral disease progression
Macromolecular synthesis
production of nucleic acids/protein polymers
mRNA encodes early and late proteins
Early proteins: nonstructural, usually enzymes
Late proteins: structural
Viral disease progression
Assembly
arrangement of structures
Virion becomes intact and is ready for release
Viral disease progression
Release
Via host cell lysis OR budding with cytoplasmic membranes
Influenza virus-hemadsorption
Common cells used for detection of viruses
These are examined periodically to look for:
human diploid fibroblasts, human epidermoid, primary monkey kidney
examined to observe cytopathic effects
Histologic detection of viruses
via H&E or special stains and identifying intracellular/intranuclear inclusions (cytopathological effects)
Examples: multinucleate cells, inclusion bodies
“owl eye inclusions” in lung pneumocyte-CMV
Viral detection methods
Viral cell cultures histology serology Ag detection via rapid tests Electron microscopy MALDI-TOF
Type of swab to use when collecting viral specimens and why?
Universal transport swabs by BD (transport media contains proteins to stabilize the viruses and antimicrobials to prevent growth of bacteria)
Calcium alginate swabs are NOT acceptable due to interface with PCR and fluorescent antibody testing
Viral cell cultures are inoculated with _____ to ______ uL of specimen
Viral cell cultures are inoculated with 200 to 400 uL of specimen
Processing viral specimens
Varies depending on the source, but can include:
setting up a cell culture
Direct detection
A viral specimen should be processed ______ upon receipt in lab.
Immediately
Viral specimen sources
bronchial washes rectal swabs/stool vesicular lesions of skin mucous membranes CSF blood bone marrow tisse cervical swabs
The amount of viral infections/diseases has increased with the advent of:
improved medical technologies (organ transplantation, cancer care….both lead to immunosuppression
How does hemadsorption work to detect influenza in cell line cultures?
The virus manufactures glycoprotein hemagglutinins that get inserted into the host cell membrane, then later get incorporated into the virus during budding
In cell culture, adding RBCs will cause the RBC to adsorb to surface membrane of virally infected cells only and can be visualize microscopically.
Viral Pathogenesis:
Possible outcomes of viral infections
Transient illness chronic infection laten infections cancer Death of host
Bunyaviruses
Genetic material:
Envelope?
Vector:
Important viruses within this family:
Genetic material: 3 single strands of RNA (**tripartite genome**) Envelope? yes Vector: mosquito Important viruses within this family: Arbovirus and Hentaviruses
Hentaviruses are _____, but are not ________.
Transmission?
Bunyaviruses, but are not Arboviruses
Transmission via inhalation of rodent excrement
Bunyaviruses infection/disease
Arboviruses
California encephalitis, (self-limiting)
LaCrosse viruses (asymptomatic to neuroinvasive)
Real-time PCR measures….
the amplified products in real-time rather than at the end of a series of cycles
Most common viral agent causes gastroenteritis in the U.S.
norovirus
Norovirus more commonly infects _____ whereas sapovirus more commonly infects ______.
Norovirus more commonly infects all ages whereas sapovirus more commonly infects infants and children
Calicivirus general: Norovirus
Linked to outbreaks of gastroenteritis:
Transmission:
Diagnostic testing:
Linked to outbreaks of gastroenteritis: on cruise ships, in nursing homes, schools
Transmission: contaminated water, person-to-person, airborne droplets of vomitus
Diagnostic testing: real-time PCR
Caliciviruses
Genetic material:
Major Genera:
Infections:
Genetic material: RNA
Major Genera: norovirus and savories
Infections: gastroenteritis
The term “arbo” virus refers to……
What families of viruses are part of this group?
arthropod borne viruses
(transmission via arthropod vectors)
Bunyaviridae, Togaviridae, Flaviviridae
Arenaviruses
1-Enveloped? 2-Genetic material: 3-Glycoprotein spikes: 4-Transmission: 5-Infections:
1-yes 2-RNA 3-T-shaped 4-inhalation of aerosols from rodent/bat excretement 5-Lassa Fever
**Can cause fever, headache, possibly meningitis and hemorrhagic fever
80% are asymptomatic
Targets for antiviral drugs
- Attachment (neutralizing Abs: HIV)
- Penetration and Uncoating (Amantadine, rimantadine: Influenza A)
- Transcription
- Protein synthesis
- DNA replication
Adenoviruses
1-Envelope?
2-Genetic material:
3-Infections:
4-Transmission:
1-No
2-Genetic material: dsDNA
3-resp. infections in children, gastroenteritis, keratoconjuntivitis
4-via aerosolized droplets or could be airborne
Coronaviruses
1-Transmission:
2-Genetic material:
3-Envelope?
1-via respiratory secretions and aerosals
2-RNA
3-yes
4-commmon cold and SARS
Genera of coronaviruses that causes the common cold
coronavirus
Hentavirus Pulmonary Syndrome
Symptoms start as _____ and then progress to _______.
1-common name:
2-Primary Host:
Transmission:
- fever, headaches
- hemorrhagic fever, kidney disease, and acute respiratory failure.
1-Sin Nobre Virus (SNV)
2-Deer mouse
3-via inhalation of excrements
Filovirus
1-Genetic material: 2-Envelope? 3-Structure: 4-Most pathogenic of: 5-Important viruses:
1-RNA 2-yes 3-long, threadlike 4-hemorrhagic fever viruses 5-Ebola and Marburg viruses
Filoviruses: Marburg Virus
1-first individuals infected were exposed to:
Reservoir:
2-Initial symptoms include ____ and then progress to ______.
3-Death rate of initial outbreak in 1967:
1-African green monkeys
reservoir=fruit bats
2-Initial symptoms include fever,chills, headache, myalgia and then progress to rash on the trunk of the body, nausea, vomiting, chest pain, jaundice, massive internal hemorrhaging, and multi-organ dysfunction.
3-25%
Filoviruses: Ebola
Treatments
Supportive treatments:
IV to balance electrolytes
Oxygen therapy
Treat other infections if/when they occur
Experimental vaccines are under development