Final Exam Flashcards
What are the other names for Pentose Phosphate Pathway?
Hexose Monophosphate Pathway
Phosphogluconate Pathway
What is the purpose of the PPP?
To generate NADPH + ribose
The PPP generates NADPH. What do we need this for?
It’s an electron donor for biosynthesis, detoxification, respiratory bursts, and antioxidant regeneration
The PPP produces ribose. Why do we need this?
For biosynthesis
- used to make nucleosides and nucleotides
- nucleosides and nucleotides are used to make ATP, coenzyme A, FAD, NAD, and NADP molecules
Where does the PPP take place?
Cytosol
What is the rate limiting enzyme of the PPP?
Glucose 6-Phosphate Dehydrogenase
How much ATP is produced and consumed in the PPP?
0 consumed. 0 produced.
What is a nucleoside?
Base + sugar
What is a nucleotide?
Base + sugar + phosphate
What are the purines?
Guanine and adenine
What are the pyrimidines?
Cytosine and thymine. Uracil in RNA.
The first part of the PPP is oxidative or non oxidative?
Oxidative
The first part of the PPP is reversible or irreversible?
Irreversible
What is the first step of the PPP called?
Dehydrogenation
In the dehydrogenation step of the PPP, ______ is converted to ______?
Glucose 6-Phosphate is converted to 6-Phosphogluconodelta-lactone
What enzyme is used in the dehydrogenation step of the PPP?
Glucose 6-phosphate dehydrogenase
What is produced in the dehydrogenation step of the PPP?
NADPH
What is the rate limiting step of the PPP?
Dehydrogenation (1st step)
What is the rate limiting enzyme of the PPP?
Glucose 6-Phosphate Dehydrogenase
What is the second step of the PPP called?
Hydrolysis
________ is converted to ________ during hydrolysis?
6-phosphoglucono delta-lactone is converted to 6-phosphogluconate
What enzyme is used during the hydrolysis step of PPP?
Lactonase
Lactonase uses what to break a bond?
Water
The third step of the PPP is called ________?
Oxidative Decarboxylation
__________ is converted to __________ during the oxidative decarboxylation step of PPP?
6-phosphogluconate is converted to ribulose 5-phosphate
What enzyme is used to turn 6-phosphogluconate into ribulose 5-phosphate?
6-phosphogluconate dehydrogenase
What are the products of the oxidative decarboxylation step of PPP?
NADPH and CO2
What is the name of the step that converts ribulose 5-phosphate to ribose 5-phosphate?
Isomerization
What enzyme is used when converting ribulose 5-phosphate into ribose 5-phosphate?
Isomerase
What is the step called when ribulose 5-phosphate is converted to xyulose 5-Phosphate?
Epimerization
What enzyme is used during epimerization?
Epimerase
During the isomerization step of the PPP, ________ is converted into _______?
Ribulose 5-phosphate is converted into ribose 5-phosphate
During the epimerization step of the PPP _______ is converted into _______?
Ribulose 5-phosphate is converted into xyulose 5-phosphate
Is the isomerization step of PPP oxidative?
No. It’s non-oxidative
Is the epimerization step of PPP reversible?
Yes. It’s non oxidative.
Is the oxidative decarboxylation step of PPP oxidative or non-oxidative?
Oxidative
The hydrolysis step of PPP is reversible or irreversible?
Irreversible. It’s oxidative.
Is the dehydrogenation step of PPP reversible?
No. It’s oxidative.
Is the oxidative decarboxylation step of PPP reversible?
No. It’s oxidative
The Transketolase 1 step uses what enzyme?
Transketolase
Transketolase removes how many carbons from xyulose 5-phosphate?
2 carbons
Xyulose 5-phosphate contains how many carbons?
5
When Transketolase removes 2 carbons from xyulose 5-phosphate, it becomes a 3 carbon structure called__________.
Glyceraldehyde 3-phosphate (G3P)
How many carbons does ribose 5-phosphate have?
5
When Transketolase adds 2 carbons to ribose 5-phosphate, it becomes what ______?
A 7 carbon molecule named sedoheptulose 7-phosphate
Explain what occurs in the Transketolase1 step of the PPP?
An enzyme called Transketolase takes 2 carbons from xyulose 5-phosphate (5C) making it a 3 carbon structure called glyceraldehyde 3-phosphate aka G3P. It then adds those 2 carbons to ribose 5-phosphate (5C) making it become a 7 carbon structure called sedoheptulose 7-phosphate.
Is the Transketolase 1 step of PPP reversible or irreversible?
Reversible. It’s non-oxidative
What enzyme is used during the transaldolase step of PPP?
Transaldolase
Transaldolase removes how many carbons?
3
Transaldolase removes carbons from what molecule?
Sedoheptulose 7-Phosphate
Transaldolase adds ___ carbons to _________.
3
G3P
When transaldolase removes 3 carbons from sedoheptulose 7-phosphate, it becomes what?
Erythrose 4-Phosphate
Erythrose 4-Phosphate has how many carbons?
4
When transaldolase adds 3 carbons to G3P, it becomes what?
Fructose 6-Phosphate
How many carbons does Fructose 6-Phosphate have?
6
Describe what transaldolase does
It takes 3 carbons from Sedoheptulose 7-Phosphate and adds them to G3P. Sedoheptulose 7-Phosphate becomes a 4 carbon structure called Erythrose 4-Phosphate. G3P becomes a 6 carbon structure called Fructose 6-Phosphate.
What enzyme is used in Transketolase 2?
Transketolase
T or F: Transketolase removes 2 carbons from xyulose 5-phosphate and adds them to ribose 5-phosphate during the Transketolase 2 step of PPP.
False. It does this in Transketolase 1. In Transketolase 2, the carbons are added to Erythrose 4-phosphate.
Describe what happens in the Transketolase 2 step of PPP.
Transketolase removes 2 carbons from xyulose 5-phosphate and adds them to Erythrose 4-phosphate making it fructose 6-phosphate. The xyulose 5-phosphate becomes G3P
How does the PPP connect to glycolysis?
PPP turns glucose 6-phosphate into ribose 5-phosphate. This can be turned into glycolysis intermediates such as fructose 6-phosphate and glyceraldehyde 3-phosphate.
3 ribulose 5-phosphates makes how many fructose 6-phosphates and glyceraldehyde 3-phosphates?
2 fructose 6-phosphates
1glyceraldehyde 3-phosphates
We make NADPH in the PPP. What can we synthesize using it?
Fat, cholesterol, steroid hormones, bile salts
Why do we use NADPH to synthesize things?
Because synthesis requires the addition of electrons. NADPH is the electron donor.
How do we use NADPH for detoxification?
We make toxins more water soluble by adding hydroxyl groups (OH) so we can excrete them in urine. This requires adding an electron from NADPH to oxygen to get H2O.
Where is NADPH used for detoxification?
The liver.
What enzyme is used to add electrons and oxygen to toxins to make them more water soluble for excretion?
Cytochrome P450
What is a respiratory burst?
The creation of “harsh chemistry” to kill pathogens
How do we make harsh chemistry?
We make it harsh by adding electrons from NADPH
Electrons + _______ =very reactive molecules
Oxygen
What are some examples or harsh chemistry formed in the body using NADPH?
Hydrogen peroxide
Myeloperoxidase
How is hydrogen peroxide used in the body?
It is used to create reactive oxygen species to destroy bacteria, viruses, and other pathogens
How is myeloperoxidase used in the body?
It’s an enzyme used to make hypochlorous acid (bleach) from hydrogen peroxide
Besides reactive oxygen species, what is the other reactice compound we talked about?
Reactive nitrogen species
What are free radicals?
Unpaired electrons
What makes free radicals extremely reactive?
They’re unpaired so they’re always trying to steal electrons
What are 3 common ROS?
Superoxide (free radical)
Hydrogen peroxide
Hydroxyl Radical
What is a superoxide radical?
A molecular oxygen with an extra electron. O2-
What are the 3 ways we get superoxide radicals?
- Mitochondrial processes such as ETC
- Cytochrome P450 reductive enzyme in the ER
- White blood cells undergoing respiratory bursts
What is quenching?
Inactivation of reactive free radicals
What usually quenches a reactive free radical?
An antioxidant
How do we reduced free radicals?
By oxidizing antioxidants
What enzyme quenches superoxide?
Superoxide dismutase
What enzymes quench hydrogen peroxide?
Catalase
Glutathione peroxidase
What is superoxide dismitase and where is it found?
An enzyme that removes superoxide (quenches it) and produces hydrogen peroxide. It’s found everywhere.
What is catalase and where do we find it?
It removes hydrogen peroxide (quenches it) and is found mostly in peroxisomes but there is a small amount in cytoplasm, mitochondria, and microsomes.