final Flashcards

1
Q

Diterpenoids

A

Not as volatile as Sesquiterps.
e.g., They will stay in rosin as terpentine is distilled away
They are difficult to separate and analyze
Mostly cyclics with a few acyclics
1 to 5 ring compounds
From head to tail condensation of IPP + FPP
In some cases it is FPP + DMAPP

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2
Q

Phytol

A

Diterpenoids
Esterified to porphyrin ring of chlorophyll
Thus, Chlorophyll is one of the most abundant terpenoids
Phytol confers lipid solubility to Chlorophyll
evolutionarily early presence terpenoids and chloropphyll
Also precursor to Vitamins E and K

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3
Q

phorbols

A

Diterpenoids
Found in croton oils from seeds of Euphorbiacea
anti-leukemic compounds
Important uses in cancer research
Often esterified to C12 fatty acids - esterified compounds are potent carcinogens
4 rings

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4
Q

Gibberellins (GA)

A

Over 50 C20 and C19 GAs known
Plant growth hormone that causes plants to grow / germinate
ent-Kaurene is an intermediate in GA synthesis
The “ent” seen as the relative stereo chemistry at positions 5 and 10 on the compound But they are enantiomers
onlly ent -kaurene is used to produce GA

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5
Q

GA properties

A
Promotes flowering
Stem Growth
Breaking dormancy
Enzyme synthesis
Fruit development
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6
Q

GA commercial Uses

A

Commercial uses
Induces malting in barley. In partially germinated barley; Hydrolysis of starch to sugar; Used in brewing to sustain fermentation
Increases sugar cane yield; increases stock growth; 60 g/acre increases yield by 0.5 ton/acre (~10 %)

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7
Q

Triterpenoids are divided into…

A

Triterpenoids can be conveniently divided into: (a) true triterpenoids, (b) steroids, (c) saponins, and (d) cardiac glycosides.

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8
Q

common triterps

A

Pentacyclics are very common, e.g. those found in waxy coatings on leaves and fruits, in bark and some resins. Also found in petroleum, especially waste products of oil refining
Four & five-ring compounds are found in (a).

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9
Q

Pentacyclics

A

β-amyrin (R = Me) oleanic acid (R = COOH) (C30)

Also liminoids - C30 with bitter tastes (in citrus)

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10
Q

Hopanes

A

Hopanes – C30 compounds from cyanobacteria (photosynthetic bacteria) and plants.
Carries over to petroleum – Marker of petroleum in waste from refining and spills

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11
Q

Tetracyclics

A

form sterols and steroids. see - pathways sheet for more specifics

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12
Q

Saponins and properties

A
Diosgenin from wild yams (Dioscorea sp.) and
hecogenin from Agave sp.  cactus 
 C27 sterol
Surface active agents
Soap-like
Cause foaming – In original Hire’s Root Beer
Can hemeolyze blood cells
Fish poisons, anti-fungal, anti-biotic
Usually in glycoside form
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13
Q

Solanine

A

Sterol alkaloid and glycoside
In green parts of potato - Potato in sunlight triggers it to make cloroplast = green
Causes Nausea/paralysis
Can be fatal

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14
Q

Cardiac Glycosides

A

In several plant species
Formed from pregnenelone
+ acetyl-CoA
Usually glycoside – with unusual sugar attached at C3
Genin name given to aglycoside (w/o sugar)
Active when sugar removed – Inhibit Na/K-pumps in cell membranes not strong enough to kill patient
Found in digitalis (foxgolve)

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15
Q

Bufadienolides, C24

A

cardiac glycosides
Toad poisons
To toxic for treatment of heart disease
In only a few plant species

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16
Q

how is Cardenolides, C23 (digitoxigenin)

A

Digitoxigenin + 3 digitoxose = digitoxin

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17
Q

other examples of cardio glycosides

A

Ouabain (strophanthin G) - Potent cardiac glycoside, A Rhamnoside
Convallatoxin (rhamnoside of strophanthidin) - Most toxic of all cardiac glycosides, Found in Lilly of the Valley - Deadly - Oleandrin, Found in oleander, Deadly if ingested

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18
Q

Carotenoids`

A

C40 Terpenoids
Carotenoids and their precursors
Widely distributed and important compounds
Biosynthesis occurs in chloroplasts of plants, algae, bacteria, and other photosynthetic organisms well as chromoplasts (e.g. tomatos and other fruit)
responsible for Yellow, red, orange colors in leaves, fruits and flowers (absorb at 400 to 500 nm)
Lipid soluble, insluble in water
Important commercial coloring agent
Not synthesized in animals - Accumulated and stored in animals – dietary intake required
n Flamingo, Starfish, Lobster, Sea Urchin; Flamingos in zoos will lose color without a dietary source of carotenoids
Sources of Vit A – Retinol; C20 alcohol
Used as a coloring agent in butter from β-carotene

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19
Q

flavanoids

A

One of the largest and most important groups of allelochemicals
Some allelopathic – Some mutually beneficial
Most from higher plants make them; animals do not make them (e.g., flavonoids that give butterflies their color come from diet)
Most water soluble - glycosolated
Absorb UV and visible light -conjugate double bonds

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20
Q

difference b/w flavanoids and terpenoids

A

Difference between flavonoids and terpenoids: there is a basic structure that all flavonoids are built from.

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21
Q

flavanoids characteristics

A
Characteristic class of compounds in plants
In all parts of the plant
Flower pigments
UV absorbing compounds in leaf epidermi
Free radical scavengers -ROS
Phytoalexins – Fungicides (allelopathy)
Can be used for taxonomy
At one point, was used to classify plants; not so much anymore because we use DNA
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22
Q

12 classes of flavanoids

A
anthrocyanidins
flavanone
flavanols
flavanones
catechins
flavan
chalones
dihydrochalcone
isoflavones
aurones
dihydroflavanols
flavan 3,4 diols
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23
Q

flavanoids common modifications

A

Most common modifications

Most are conjugated to sugars at the hydroxy groups on the rings

Glycosides give water solubility
Many of the anthocyanins, flavones, flavonols and flavonones are glycosylated

Many are O-methylated and O-acylated at hydroxyls
Makes the compounds lipophillic

Many chelate metals - Many of the anthocynanins that are giving flower colour have a metal attached to them, which allows for large complexes to form

Affects their spectral properties

Can be dimerized and oligomerized

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24
Q

Biosynthesis of flavonoids

A

Phenyl propanoid pathway
1 ) Phenyl alanine to 4-coumaroyl-CoA -coumaroyl-CoA is a precursor to a number products – Including flavonoids and lignins

2) 4-coumaroyl-CoA + 3 malonyl-CoA to chalcone (committal step)
3) )Oxidation and reduction of the central pyran ring to the 24 flavonoid skeletons
4) Modification of flavonoids by glycosylation, methylation, acylation, metalation and oligomerization

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25
Q

Flavonoid Occurance and Function

A

Usually in the vacuole of the cell – especially
for flower coloring and UV protection
However biosynthesis occurs in the cytoplasm

Enzymes may be associated with tonoplast membrane (the membrane around the vacuole)

During the final stage of biosynthesis, flavonoids transported into the vacuole

In vacuole, aggregates of flavonoids may form – anthocyanoplasts for flower coloring
Flavonoids also in cholorplasts (cps) and cytoplasm – important for free radical scavenging

Extracellular flavonoids – in waxey layers and cuticles (methylated flavonoids) – Fungicides & bactericides

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26
Q

flower colouring

A

Flower coloring
Cyanic color – Stability of color and basis of color variety
Main pigments - anthocyanins

Positive charge in pyran ring can be attacked by OH-
Color lost if attacked
pH of vacuole is acidic (pH ~ 4.5), somewhat protecting the + charge
However, even at pH 4.5, still enough OH- to attack + charge
To preserve color, additional protection of + charge is necessary – done by aggregation of the molecules

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27
Q

how are the colours of flavonoids affected by self- association

A

Self-association
Solutions of anthocyanins deviate from Beer’s Law as anthocyanin concentration increases
As concentration increases, Abs saturates
Either number of molecules in
solution is not increasing with
concentration or ε is changing
or both
If aggregation (self-association)
is occurring, effective concentration
does not increase in proportion
to number of molecules (dimers, trimers, etc. absorb as single molecules)
That is, aggregates absorb as a single molecule. Abs does not go up with each molecule added into solution
They stack in a planer fashion; promoting π−π interactions and hydrophobic interactions

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28
Q

intermolecular co-pigmentation

A

Exceptionally stable pigments
Acylated through glycosyl groups
Acyl group is an aromatic ring (e.g. coumaroyl, caffoyal or sinapoyl)
Still protects anthocyanin + charge
Will also change spectral properties of the pigments in the complexes – shifts λmax just like with anthocyanin aggregates
Have very deep blue colors – Heavenly blue

29
Q

what are cyanoplasts

A

a flavonoids that is the most common in flower colourings

30
Q

yellow flower comes from ….

A

From a combination of anthocyanins and carotenoids

31
Q

how to flavanoids help protect plants from UV

A

Flavonoids that absorb UVB (especially flavonols) are synthesized in response to UVB
When plants are exposed to UVB, certain flavonoids are released in specific Parts.
Absorb strongly at 290 to 350 nm, screening mesophyll from UVB

32
Q

who can we induce flavanoid protection in plants

A

grow under the conditions for 2 weeks and then extract from the plant

33
Q

what are allelo-chemicals

A

Allelo-chemicals allow for mutual relationships between organisms for Mutual benefitand Competition
Made by plants, animals and microbes
Allows chemical signalling
Fighting off enemies
include: Flavonoids Taxol Environmental photochemistry and photobiology Photochemistry of beer

34
Q

Allelopathic chemicals include…

A

Natural toxins
Plants are the biggest producers of allelopathic chemicals
Gives selective advantage
Considered generally safe – because they are natural – but can be as or more toxic than pollutants
Generally have evolved to be hazardous to specific competitors

35
Q

outline a method for the extraction of allelo chemical

A

Extract from tissue with appropriate solvent – H2O or MeOH or Acetone etc.
Partial purification – Usually chromatography
Test fractions on target organism
Further purify fractions with activity
Test “pure” compounds – identify compound with activity

36
Q

Mechanisms of action of a few allelopathic chemicals

A

Many are Phenolics, Benzoic acids, etc.
Cyanogenic glucosides, Monoterpenes, Cinnamic acid, Salacylic Acid, Arbutin, lactones, tannins, etc
Many effects – inhibit nutrient uptake (phosphate), K+ uptake, inhibit plant hormones, inhibit protein synthesis, increase membrane permeability
Especially cause tonoplast leakage (Vacuoles of plants lose water)
Wide range or effects; probably general membrane damage is the main cause

37
Q

Psoralen

A

allelochemical
Inhibits cell division and sterilizes blood
Psoralen-DNA adducts are formed via the Diels-Alder reaction:
cross links 2 T form opposite strands

38
Q

Juglone

A

Many natural products (natural herbicides) inhibit photosynthesis
Produced by the black walnut tree
Juglone inhibits electron transport
Inhibits photosystem II by binding to the plastoquinone site – competitively inhibits photosynthesis – has similar structure
Also inhibits CoQ reduction in mitochondria
Atrazine (herbicide) acts at same site as juglone

39
Q

Other allelochemical functions

A

Attraction of bees to flowers - Flavonoids
Seed dispersal – Flavor, Aroma – Terpenoids; Color – Flavonoids, carotenoids
Repellants
Capsaicins in hot peppers

40
Q

Production of Allelochemicals

A

UV radiation in sunlight
Day length – especially end of day effects from far red light – e.g., day length regulates flowering
Stress – e.g., causes synthesis of compounds that protect against oxygen radicals
Elicitors – microbial attack causes synthesis of phytoallexins in plants – e.g., flavonoids

41
Q

Taxol

A

Fights cancer, especially breast cancer
Chemotherapeutic drug, now in use
From the bark of the Pacific Yew tree, Taxus brevafolia
Most plentiful in National Forests of Oregon, but not a dominant species
Estimated 300,000 kg of bark for 25 kg of taxol
Must kill tree to get it, need 3 trees per patient
Not practical, so the molecule has been synthesized
Synthesis, was very complex; many chiral centers

42
Q

Taxol and Taxotère are synthesized from

A

10-deacetyl-bacctatin

43
Q

Taxol Mechanism of action

A

Taxol impacts directly on mictotubules, effects mitosis and the cytoskeleton
Microtubule polymerization and depolymerization important for cell division - interfered with, mitosis and cell division are inhibited
Taxol stabilizes microtubules so that they cannot polymerize and depolymerize - by stabilizing tubulin
By comparison, Colchicine causes microtubule disassembly
Both used to study cancer, only taxol used to treat cancer

44
Q

what is a potential source for taxols

A

Taxomyces andreanae, a fungal endophyte, was isolated from the phloem (inner bark) of the Pacific yew, Taxus brevifolia. The fungus when grown in a semi-synthetic liquid medium, produced taxol and related compounds. Taxol was identified by mass spectrometry, chromatography, and reactivity with monoclonal antibodies specific for taxol.

45
Q

what is environmental photochemistry

A

drives light processes like photosynthesis and vision
some allelopathic and many xenobiotics compounds are photoactive - they can be activated by UV and radiation but visible is important too
UV (290 to 400 nm) and visible radiation (400 to 700 nm) drive these processes, because they cause electronic transitions in molecules; infrared (> 800 nm) causes vibrational transitions (heat); < 290 nm does not reach the earth
energy is inversely proportion al to wave length
Electronic transitions are required for photochemistry
conjugated double bonds
photons carry quantized energy, electrons absorb quantized energy

46
Q

what happens to electrons when they absorb low, moderate, and high levels energys

A
  1. Low energy = Vibrational/ rotational states:
    Photochemistry does not occur
    caused by radio waves, microwaves, and infrared radiation
  2. Moderate energy = HOMO to LUMO (transitions)
    photochemistry occurs
    electron can flip its state (intersystem crossing) and react with triplet O2
    caused by UV and visible light
  3. High energy = electron ejected
    Caused by x-rays and gamma rays
    this is an ionization process
47
Q

when an e- absorbs energy yet stays in the same state , what hapens to the spin

A

the spin doesnt change

48
Q

when would we se a singlet state

A

with e- that have different spins

s = 2s +1 = 2[ - ½ + ½ ] +1 = 1 (singlet)

49
Q

when would we see a triplet state

A

Triplet state: s = 2s + 1 = 2[ + ½ + ½ ] +1 = 3 (triplet)

when intersystem crossing occurs, the electrons now have the same spin, and they’re in triplet state

50
Q

from the excited state an e- have 4 paths

A
  1. get rid of energy by thermal deactivation. This is what the carotenoids do
  2. intersystem crossing where it switches its spin and state
  3. reaction from singlet (reaction from singlet). For example, photosynthesis
  4. gives off energy and
51
Q

detail the steps of photochemistry

A

Detailed Steps

  1. Electron absorbs UV or visible light
    Energy is enough to cause a transition going from HOMO to LUMO
    the spin remains the same (so it’s still singlet) but is now in the excited state
  2. Intersystem crossing
    Goes to the excited triplet state - the spin is changed to opposite
    This is a forbidden transition (because you have to flip the spin) and now it is harder to get to ground state
    it is rarer and slower…. Not that it doesn’t happen
  • From here, the electron has 2 options to get back to ground state
  1. photosensitization
    Electron reacts with triplet O2 and makes it into singlet O2 - this also converts the electron back into the singlet state - now it is back to ground state
  2. deperoxidation:
52
Q

what options does an electron that has under gone intersystem crossing have to return to its ground state

A
  1. Phosphorescence: electron goes back to ground singlet state and loses light in the process
  2. Photosensitization: react with a photosensitizer (eg triplet state O2) and go back to ground state - this is hard to do
53
Q

what is a photosensitizer

A

the molecule that gets excited and undergoes intersystem crossing
it is always regenerated by going back to the ground state

54
Q

differentiated b/w the different types of photosensitization

A

Type 1 photosensitization
* Much rarer
* The excited molecule reacts with another molecule to form a radical
once O2 comes in, a peroxide radical is formed then deperoxidation forms the aldehyde
The hydrogen peroxide can undergo a fenton reaction: when it is converted into a highly reactive free radical - this will cause a cross linking chain reaction in the lipid membrane
Type 2 photosensitization
basically the same mechanism as type 1, but you do not get the hydrogen peroxide radical

55
Q

why is singlet O2 bad

A

Now that it is in singlet state,
* it can react with other molecules
* From type 1 photosensitization
can make hydrogen peroxide radical this will cross link lipids and it is a chain reaction

56
Q

Psoralen

A

Inhibits cell division and sterilizes blood

psoralen - DNA abstracts are formed via diel-alder reaction

57
Q

Is Psoralen a Photosensitization Reaction?

A

NO
This is because the psoralen is NOT regenerated
it is a photochemical though because it does absorb light and get excited … but it is not regenerated (it is consumed in the reaction)

58
Q

Which would we predict to be more effective in damaging DNA at lower concentrations? Photochemicals or photosensitizers?

A

photosensitizers because it’s catalytic (regenerates itself)
however, we find that they work at the same concentrations.. why? This is because photosensitizers are random in what they effect, but psoralen isn’t… thus, a certain threshold must be reached by the photosensitizer in order to damage DNA, whereas psoralen will always damage DNA and DNA only
A photosensitizer has a threshold to cause damage… psoralen doesn’t

59
Q

what is photodynamic theory

A

Used to kill cells… in particular cancer cell, Uses type 2 photosensitization to do this
How do we make sure it gets to the cancer cells? inject it in the blood cancer cells are highly vascularized
then you have to shine light on the cancer tumor that is lower wavelength than red

60
Q

why must a light with a wl lower than red used in photodynamic treatment

A

it can’t be red because the heme absorbs red light (Due to being more conjugated due to having HOMO and LUMO closer together and being red shifted)

61
Q

Why are Conjugated Molecules Better at Transitioning

A

As we add more double bonds (in a conjugated way) the HOMO and LUMO are brought closer together
this means you the energy needed to transition is lower
this means longer wavelength will excite it
longer wavelength = red shifted
After about 8-10 conjugated double bonds you get a carotid and start absorbing into the visible spectrum
this is the same principle for flavonoids… if we stack, its like we are getting dimers/ trimers. This brings the HOMO and LUMO closer which makes them red shifted

62
Q

4 types of Malt Volatiles

A

Lipid oxidation products
Mailard reaction products
Aliphatic sulfur compounds
Phenols

63
Q

what products are produced from lipid ox from Malting

A

Short chain aldehydes and shortchain en-ols (low conc)

64
Q

Mailard products from Malting

A

create Flavor and color
From sugar oxidation and modification
Pigment (yellow, brown to black) – Meloindens
Carmelization in many foods from heating

65
Q

Sulfur volatiles products from Malting

A

Dimethyl sulfide - MeSMe
From degradation of methionine and Cysteine
Must be controlled for flavor quality

66
Q

Phenols products from Malting

A

From ferulic and coumaric acid during malting
Consumed by yeast during fermentation
In low content

67
Q

characteristics of Hops

A

Source of distinctive bitter taste of beer
Source of skunky flavor in light struck beer
Unseeded flowers used - only female plants used – male plants highly regulated
Originally used in brewing as a preservative
Hop acids allelopathic – kill most fungi, except yeast
Flavor from hop oil

68
Q

flavour - hop acids

A

Terenoid alcohols, epoxides ketones and esters
Stabilize the foam
Spicy citrus flavor of hoppy beers
Most important: α-acids, β-acids and iso-α-acids
Also, what will cause light struck beer