fatty acid metabolism Flashcards
naming fatty acids
- Greek letters - α,β…ω used mostly for talking about sites of chemical reactivity
- Numbering carbons-
C1, C2 … Cn used for locations of features, e.g. double bonds
what is the main storage of energy
- in form of lipids
- mipid catabolism mobilizes the organisms main energy
Circulating fuels 400kJ (includes glucose, fatty acids, etc)
glycogen: 4000KJ
aminoacids: 100,000 KJ
triacylglycerols 600,000 KJ
what are triacylglycerol
Mixed triacyglycerol - main storage form
Abbreviated as TAG
how are FA stored, what are they coated in, where does degredation occur?
Fatty acids are stored as triacylglycerol in “fat cells” i.e. adipocytes
TAG in adipocyctes coated by the protein perilipin to form lipid globules
Fatty acid degradation occurs in the mitochondria of cells (e.g. muscle)
Need to get TAG reserves to target tissue
explain the preparation of the mobilization of FA from adipocytes (1-4)
1) Hormone (glucagon) binds receptor
2) activated glucagon receptor sends signal (via G protein), kinase is activated
*cAMP comes along activating kinase
3) PKA phosphorylates a lipase, HSL (hormone sensitive lipase), sticks it into membrane of lipid droplet
*PKA has a second target
4) PKA phosphorylates perilipin (transmembrane protein)
- phosphoylated perilipin releases CGI
exaplin the release of FA in the Mobilization of Fatty Acids from adipocytes (5-8)
5) Phosphorylated perilipin releases the protein CGI
6) CGI activates Adipocyte triacyl glycerol lipase (ATGL), which releases first FA
7) HSL release second FA from diacylglycerol
8) Monoacyl glycerol lipase (MGL) cleaves the third FA from monoacyl glycerol
*monoacyl glycerol is not regulated
- fatty acisd diffuse out the lipid droplet
explain FA transport in the Mobilization of Fatty Acids from adipocytes (9-11)
9) Released fatty acids enter the bloodstream, where they bind to serum albumin
10) FA transporter in the muscle cell takes up fatty acid
11) FA will then be oxidized in the muscle cell via β- oxidation
explain fatty acid oxidation: where does it start, where does it occur and how does it get there
- process starts in cytoplasm, but occurs mostly in mitochondria
- transport of Fatty Acids into the Mitochondria: if 12 C or less no need for transporter, if larger than 14 C fatty acids must go through carnitine shuttle
- Cytoplasmic fatty acids are first converted to fatty acyl-CoA (by acyl CoA synthetase)
- Fatty acyl group is then transferred to carnitine (by carnitine acyltransferase I)
- Fatty acyl-carnitine enters mitochondria (via acyl-carnitine/carnitine transporter)
- Fatty acyl-CoA regenerated within the mitochondrion (by carnitine acyltransferase II)
*in order for carnitine transporter to work need to change nature of fatty acid)
how does the carnitine shutle transport FAs into mitochondiria
- Fatty acyl-carnitine formed at outer membrane or intermembrane space of mitochondria
-It moves into matrix by facilitated diffusion
-Acyl group transfered to mitochondrial CoA by carnitine acyltransferase II
-Acyltransferase I is inhibited by malonyl CoA
(Inhibition prevents simultaneous synthesis and degradation of fatty acids, malonyl CoA is involved in synthesis of fatty acids, so we are importing fatty acids in and dont want both pathways at once)
*there is a transporter at inner mitochondrial membrane
*acyl transferase II recycles it back from carnitine fatty acid molecule
explain the complete oxidation of fatty acids
*whole process occurs in mirochondria
- three stages
(1) β-oxidation produces acetyl CoA
*long chain fatty acid is oxidized to yeild acetyl CoA (cuts at every 2 carbon)
(2) acetyl CoA is oxidized in the citric acid cycle
*Acetyl groups are oxidized to CO2 via the citric acid cycle
(3) NADH and FADH2 donate e- to mitochondrial respiratory chain, ultimately yielding ATP
*electrons from stages 1 and 2 pass to O2 to make ATP
how does β-oxidation converts fatty acids to acetyl-CoA
(what end is acetyl CoA removed from)
- One cycle of β- oxidation results in one acetyl-CoA being removed from the carboxyl end of the fatty acid chain
- In each pass two carbon atoms are removed
- Continues until only acetyl-CoA is left
Explain steps 1 and 2 of FA degredation
1) Dehydrogenation
- exposre to acyl-CoA dehydrogenase, strip a hydrogen atom off
fatty acyl-CoA (Cn) -> FADH2 + trans-Δ2-enoyl-CoA
2) Hydration
Use enoyl-CoA hydratase (uses water)
trans-Δ2-enoyl-CoA -> L-β-hydroxyacyl-CoA by
explain step 3 and 4 of FA degradation
3) Dehydrogenation
- uses β-hydroxyacyl-CoA dehydrogenase
L-β-hydroxyacyl-CoA -> NADH + β-ketoacyl-CoA
4) Cleavage
- uses acyl-CoA acetyltransferase (thiolase)
β-ketoacyl-CoA -> acetyl CoA + fatty acyl-CoA (Cn-2)
*each loop involves the 4 steps to generate 1 mol of acetyl CoA
what tpes of problems occur in oxidation of faty acids
Problem 1: Cis bond
- β-oxidation works on trans double bonds
Problem 2: Two double bonds
- Similar to cis bond problem
Problem 3: Odd number carbons
- β-oxidation works on even number of carbons
how is an odd number of carbon atoms overcome
- Initially β-oxidation proceeds normally
- Propionyl-CoA (3 C atoms) cannot be oxidized by acyl-CoA dehydrogenase
- Instead a separate three enzyme pathway carboxylates propionyl-CoA to succinyl-CoA (4 C atoms)
- Succinyl-CoA is part of TCA
*bascially just add a carbon to make it an even number
*know it carboxylates
How do you get over a cis double bond
- β-oxidation enzymesi gnore the kink and process cis-fatty acids normally
- β-oxidation proceeds as normal for three rounds,
- cis-Δ3 FAs are not substrates for acyl-CoA dehydrogenase because C3 is already in a double bond
- The enzyme Δ3,Δ2-enoyl-CoA isomerase can move the double bond
- It converts the cis-Δ3 FA to trans-Δ2
- trans-Δ2 FA is a substrate for enoyl-CoA hydratase
- β-oxidation proceeds normally
**Net result: one fewer FADH2 (because acyl-CoA dehydrogenase skipped this cycle)
*understand that we just rearrage using enzymes like isomerases to relocate double bonds so they can act as substrates for beta oxidation
how do you fix two double bonds (first steps)
- first double bond is in the 9 position (odd), the second will be at the 12 position (even)
- β-oxidation will sequentially produce both cis-Δ3 and cis-Δ4 FA intermediates
- rxn proceeds as with one double bond to produce a cis-Δ3,Δ6 FA
- cis-Δ3,Δ6 FA is converted to trans-Δ2 cis-Δ6 FA by Δ3,Δ2 enoyl- CoA isomerase (just relocates it)
- trans-Δ2 cis-Δ6 FA is substrate for the hydratase
- This β-oxidation cycle thencompletes normally, yielding a cisΔ4 FA
how to you solve two double bonds (second half of steps)
- cis-Δ4 FA substrate, acyl-CoA dehydrogenase produces a trans-Δ2 cis-Δ4 FA
- The resulting conjugated double bond cannot be hydrated by enoyl-CoA hydratase
- Reduced by 2,4-dienoyl-CoA reductase, yielding a trans-Δ3 FA
- trans-Δ3 FA is then converted to trans-Δ2 FA by Δ3,Δ2 enoyl- CoA isomerase
β-oxidation then proceeds normally
*dont need to memorize names of all intermediates and enzymes for the problems
*understand that we just rearrage using enzymes like isomerases to relocate double bonds so they can act as substrates for beta oxidation
what are ketone bodies?
- Acetyl-CoA can enter the TCA
*mobilizing fat stores
- Optionally, acetyl-CoA in the liver can be turned into ketone bodies
- Ketone bodies allow acetyl- CoA to enter the citric acid cycle in a different cell
- This frees up CoA, so further FA can be degraded
- Ketone bodies act as an alternative fuel e.g. for brain (which cannot use FAs)
*by generating ketone bodies we are sending acetyl CoA and package them as ketone bodies which freeze up CoA so further fatty acids can be degraded (act as alternative fuel source)
explain ketone body anabolism
Acetoacetate is formed by condensing three acetyl-CoA molecules, then cleaving one
D-β-hydroxybutyrate is formed by reducing acetoacetate
Acetone is a minor product, formed by decarboxylation, and is exhaled
Explain ketone body catabolism
Conversion back to acetyl-CoA
In the end, two molecules of acetyl-CoA are regenerated for the citric acid cycle
- product is 2 acetyl CoA
What is fatty acid biosynthesis
Occurs in the cytoplasm
Is reductive, using NADPH
Acetyl-CoA is the starting substrate, and is converted to malonyl-CoA as the committed step
what is the acetyl gorup shuttle
- Acetyl-CoA is not directly transported from the mitochondria to the cytosol
- mitochondrial acetyl-CoA is combined with oxaloacetate to produce citrate
- Citrate is transported to the cytosol
- Citrate lyase in the cytosol produces acetyl-CoA
Oxaloacetate is reduced to malate, which can then return to the mitochondria either directly, or after decarboxylation to pyruvate
- Mitochondrial enzymes use malate/pyruvate to regenerate oxaloacetate
- Most of these enzymes are part of other metabolic pathways – e.g. TCA, gluconeogenesis
explain fatty acid biosynthesis using malonyl CoA (how is malonyl CoA formed)
- Fatty acids are made from the activated intermediate malonyl-CoA (not found in FA degradation)
- Malonyl-CoA is made from acetyl CoA and HCO3 in an ATP dependent reaction
- This is reaction catalysed by acetyl-CoA carboxylase
What is acetyl CaA carboxylase
- Biotin carrier protein
- carries the biotin cofactor
- Biotin carboxylase
- enzyme that uses ATP to activate biotin with CO2
- Transcarboxylase
- transfers CO2 from biotin to acetyl CoA to form malonyl-CoA
What is the fatty acid biosynthesis cycle
Carbon atoms are added two at a time by a repeating, four step sequence
- Condensation of malonyl-CoA with growing FA
- Keto reduction
- Dehydration
- Enoyl reduction
- Saturated acyl groups are the substrates for condensation with activated malonyl groups
- Each cycle extends the chain by 2 carbon atoms
- Reduction is accomplished using NADPH The growing fatty acid chain is covalently attached to a small protein – Acyl carrier protein (ACP)