ExMockup Flashcards
What is latent tuberculosis?
Latent tuberculosis occurs when a person is infected with Mycobacterium tuberculosis but does not show symptoms and is not contagious.
Why does latent tuberculosis represent a public health problem?
Latent TB serves as a reservoir for future cases and can reactivate, posing challenges for disease elimination.
What is an example of a genotyping method suited for short-time or local epidemiology?
Multi-locus Sequence Typing (MLST).
What is the principle of Multi-locus Sequence Typing (MLST)?
MLST sequences internal fragments of multiple housekeeping genes to distinguish closely related strains.
What is an example of a genotyping method suited for long-term or global epidemiology?
Whole Genome Sequencing (WGS).
What is the principle of Whole Genome Sequencing (WGS)?
WGS analyzes the entire genome of a pathogen for evolutionary and global epidemiological studies.
What is single-molecule sequencing?
A method that reads DNA or RNA directly without amplification.
What are advantages of single-molecule sequencing?
It generates long reads and enables direct RNA sequencing with modification analysis.
What are disadvantages of single-molecule sequencing?
It has lower accuracy than short-read methods and is expensive.
What is the core genome?
The set of genes shared by all strains of a species.
What is the accessory genome?
Genes present in some but not all strains, often related to adaptation.
What is the pangenome?
The total set of genes in all strains of a species, including core and accessory genomes.
What is reference-based assembly?
It aligns sequencing reads to a known reference genome.
What are advantages of reference-based assembly?
It is faster and less computationally intensive.
What are limitations of reference-based assembly?
It depends on the quality of the reference and may miss novel sequences.