Exam IV Study Guide Flashcards

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1
Q

Know the definition of cell division and describe the two important requirements of this process

A

The Process by which one cell becomes two daughter cells

Requirements:
1. Each daughter cell must receive the full complement of genetic material from the parent cell
2. The parent cell must be large enough to divide in two and provide sufficient cytoplasmic components to the daughter cells

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2
Q

Know the process of Binary fission and the type of cell in which this process occurs

A

The Process whereby Prokaryotic Cells undergo division is called “Binary fission”

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3
Q

Compare cell division in eukaryotes vs prokaryotes

A

Eukaryotes:
- DNA in nucleus
- Genome Larger and Linear

Prokaryotes:
- genome small and circular
- DNA in Cytoplasm

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4
Q

Know and Describe the two distinct phases of the cell cycle; including which stage a cell spends the majority of it’s time in.

A

For Eukaryotic Cells, there are two distinct stages

  1. M-Phase: The Time where the parent cell splits into two, daughter cells
    A. Mitosis: Division of DNA
    B. Cytokinesis: Separation of cytoplasmic Organelles.
  2. Interphase: The Time between “M-Phases”
    * This is the longest phase — and the cell spends most of its time during it
    A. Interphase lasts 10-14 hours.

• During Interphase, the Cell makes preparations for division:
◦ replication of DNA in the nucleus
◦ increase in cell size

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5
Q

Describe Interphase, including the four phases that comprise it.

A

Four Phases of Interphase

  1. G1 phase, first “Gap” Phase (Big Growth Phase for the Cell).y
    • the size and protein content of the cell increases in preparation for the S phase
    ◦ regulatory proteins are made and activated
  2. S phase
    • the entire DNA content in the nucleus of the cell is replicated
  3. G2 phase
    • the cell prepares for mitosis and cytokinesis
  4. G0 phase
    • differs from G1 because there is no preparation taking place for cell division
    ◦ this phase is present in cell types that do not actively divide: liver and nerve cells
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6
Q

Describe how DNA is organized in Eukaryotic Cells

A

DNA is organized within histones and other proteins into chromosomes.

Cells in the human body contain 46 chromosomes (23 Pairs).

  • Humans have 22 pairs of homologous chromosomes and 1 pair of sex chromosomes.
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7
Q

Compare Haploid and Diploid Cells

A

Haploid Cells: Only have 1 of a set of data. (Sperm / long egg)

Diploid Cells: Have 2 sets of complimentary data (zygote: Egg + Sperm, fertalized)

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8
Q

Know the Definition and function of: Centromeres, Chromatids, and Kinetochores

A

Centromeres: The middle area that binds sister chromatids together (Think of this as the binding site between the two — brining them together to form one).

Chromatids: If you were to take our X shaped chromosomes and split it town the middle into > / < , we would have two sister chromatids. So for every chromosome, we have two chromatids

Kinetochores: These are the binding sites on the actually Centromeres that the Microtubules filaments can bind to. Think of these as the “Anchor Sites” for the Microtubules. After binding to the Sister Chromatids, the Microtubules will be shortened — thus pulling the sister geomatics away from one another, separating them.

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9
Q

Know and Describe the 5 Stages of Mitosis:

A
  1. Prophase

• Microtubules are long chains of proteins that are emitted from Centrosomes.
◦ This stage is still Diploid, because we have two complete sets of genetic material

  1. Prometaphase

• Disintegration of the Nuclear Envelope.
• Then, the Microtubules (coming from Centrosomes), start to attach to the Chromosomes at their Kinetochores.
‣ Kinetochores are on the “Centromeres” of the Chromosomes

  1. Metaphase

• Chromosomes are going to line up in the Midline of the Cell
◦ Still Diploid

4. Anaphase • The Microtubules are going to Retract back towards the Centromere, shortening the Microtubules • This shortening is going to pull apart the Sister Chromatids, leaving both sides with 1 copy of their respective DNA.

• After being pulled apart, each Chromatid becomes a CHROMOSOME

In anaphase, the # of Chromosomes in a cell will double!

  1. Telophase

• In telophase, we are going to reform our Nuclear Envelope around our nearly formed Chromosomes.

• These chromosomes are going to de-condense, and become long and stringy.

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10
Q

Know and Describe the process of Cytokinesis

Also, compare them in Plant and Animal Cells

A

(In Animal Cells)
• Actin Filaments form a Contractile Ring, Perpendicular to the spindle axis; the ring contracts and pinches the cell into two
• As the Actin Filaments shorten and shorten, it will “pinch” off the cell — which will leave us with two, genetically identical daughter cells.
• Both Daughter Cells are Genetically Identical to the Parent Cell

(In Plant Cells)
* Formation of the cell plate which eventually becomes the cell wall. This cell plate separates the cytoplasm and distinguishes 2 unique cells

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11
Q

Know where meiosis is occurring and its basic properties

A

◦ Meiosis occurs in specialized germ cells that result in Sperm and Egg cells.
‣ Results in four daughter cells (genetically unique)
‣ Each daughter cell is a haploid (contains half of the chromosomes as the parent cell).

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12
Q

•Know and describe the processes of Meiotic Cell Division I and Meiotic Cell Division II, including all aspects of crossing over that occurs during Prophase I and the accounting of chromosomes at each stage

A

Meiosis 1: Results in 2 daughter cells, each with 23 paired chromosomes (46 Chromatids).
Meiosis 2: Results in 4 daughter cells, each with 23 unpaired chromosomes (because these cells are haploid, totaling 92 chromatids across all 4 daughter cells). Or 23 chromatids per cell.

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13
Q

•Compare cytokinesis in sperm and egg cells

A

• All 4 Daughter cells from Meiosis 2 are useful for Males
• 1 Egg will take the majority of the cytoplasm, resulting in 1 egg and 3 “polar bodies” as the daughter cells resulting from Cytokinesis.
◦ Only the Egg “Ooocyte” is helpful, the three polar bodies can’t be used

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14
Q

Describe how fertilization produces a diploid cell

A

Fertilization is quite literally the combination of two haploid cells. This results in a diploid Zygote, which gets 1/2 of its genetic material from both Papa Sperm and Momma Egg. (Diploid meaning that it now has 23 pairs of chromosomes).

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15
Q

Compare key similarities/differences between mitosis and meiosis

A

◦ Mitosis produces Diploid daughter cells (2), which are genetically identical to the parent
◦ Meiosis’s produced Haploid cells (4), which are genetically unique from the parent.
‣ MEIOSIS ALSO GOES THROUGH ITS STEPS TWICE!

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16
Q

Know and describe Cyclins and Cyclin Dependent Kinases and their role in regulating the cell cycle
Progression through the cell cycle is usually regulated by Cyclins. (Produced and degraded cyclically).

A

• Activate Cyclin Dependant Kinases (CDKs).
• Activation of CDKs promotes cell division
• CDKs are always present in the cell but are only active when bound to a Cyclin.

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17
Q

Know and compare the function of the G1/S Cyclin-CDK complex, S Cyclin-CDK complex, M Cyclin-CDK complex and know when each complex is acting during the cell cycle.

A

G1/S Cyclin-CDK Complex: Active at the end of G1, and it’s job is to prepare the cell for “S” Phase
S Cyclin-CDK Complex: Initiates DNA synthesis during the “S” Phase
◦ Also activates Protein complexes involved in DNA replication.
M Cyclin-CDK Complex: Active at the end of G2 and beginning of M,
◦ Initiates multiple events associated with mitosis.

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18
Q

Know and compare the DNA damage checkpoint, DNA replication checkpoint, and Spindle assembly checkpoint, including when they are occurring during the cell cycle

A

DNA Damage Checkpoint: Checks for Damaged DNA before entering the S phase
DNA Replication Checkpoint: Checks the presence of unreplicated DNA before the cell enters mitosis
Spindle Assembly Checkpoint: Checks for attachment of all chromosomes to the spindle before the cell progresses with mitosis.

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19
Q

Describe the role of p53 in the DNA damage checkpoint

A

P53 is responsible for bonding onto damaged DNA, which prevents it from being exported; giving the cell time to repair the damaged DNA and continue the cell cycle

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20
Q

Know the basic structure of DNA

A

• Sugar-Phosphate Backbone, Major Grooves and minor grooves for enzyme binding, Nitrogenous bases are held together through Hydrogen-Bonding.

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21
Q

Describe and compare the Conservative and Semi-Conservative models of replication

A

Semi- Conservative: After DNA replication, the new DNA complex consists of one parental strand and one new daughter strand.
Conservative: After DNA replication, the new DNA duplex consists of two newly synthesized daughter strands.

22
Q

Describe how the Meselson-Stahl experiment proved the semi-conservative model true

A

◦After one round of replication in the absence of heavy nitrogen, the parental strand still contained Heavy nitrogen, and the daughter stand didn’t contain it. After two rounds of replication, half of the duplex DNA molecules have one strand with Heavy Nitrogen, the Other two strands didn’t.

This proved the Semi-Conservative model to be true.

23
Q

Know the function and properties of DNA Polymerase, including its proofreading ability

A
  • Catalyzes DNA Replication

1)DNA polymerize catalyzes the addition of new nucleotides to the 3’ end of a growning DNA strand. It also corrects mistakes in replication.
2) Catalyzes DNA Replication

24
Q

Describe and compare continuous (leading strand) and discontinuous (lagging strand) replication

A

• Leading strand is synthesized (Continuously) in the direction of the Replication fork, which allows for it to replicate 100% of the data.
• Lagging strands are synthesized opposite of the direction of the Replication fork, in segments. This also means that it is unable to replicate 100% of the parental data.
◦ These strands are known as Okazaki Fragments

25
Q

Know the function of RNA primers and Primase in DNA replication

A

◦ RNA Primase: Adds RNA primers onto the Parental strand, which allows for DNA polymerase to bond onto it so that it can start building the daughter strand.
◦ DNA Polymerase: Adds new nucleotides to the 3’ end of the daughter strand, and proofreads the DNA synthesized
◦ DNA Ligase: Joins Okazaki fragments

26
Q

Know the function of Helicase, Topoisomerase II, and Single-stranded binding proteins during DNA replication

A

Helicase: Unwinds the DNA duplex into separate single strands
Topoisomerase II: Makes snips in the DNA to relieve the stress that comes with unwinding
Single-Stranded Binding Proteins: Stabilizes the single strands, which prevents them from rejoining together.

27
Q

Define the Origin of Replication

A

◦ The Region of DNA where the DNA replication begins!

28
Q

Describe the end problem of DNA and the use of Telomerase and telomeres to combat this problem

A

◦ The Telomere is a sequence of repeating DNA that is a “meat shield” for our genetic material. In most cells, the telomere sequence gets shortened after every round of replication — which will eventually lead to damage of our genetic material. The telomere prevents/delays that damage.
‣ Telomerase is fully active in germ cells, but it is inactive in adult somatic cells

29
Q

Define and compare the Genotype and Phenotype of an organism

A

• Genotype: The Genetic Makeup of an Organism
• Phenotype: The Individual’s Observable characteristics

30
Q

•Define and compare genes and alleles

A

• Gene: Sequence of DNA nucleotides that codes for a protein or functional RNA
• Alleles: The different forms of a gene, corresponding to differences in DNA sequences.

31
Q

•Describe how an organism’s genotype influences its phenotype

A

An organism’s genotype can prevent a particular phenotype from being expressed. Where even though the organism has the genetic potential to express a particular trait, other factors prevent it from doing so.

32
Q

•Define and compare homozygous and heterozygous

A

Homozygous: Two of the same Alleles for that trait (Could be either recessive or dominant).
Heterozygous: Two Different Alleles for that trait.

33
Q

•Define transmission genetics

A

Transmission Genetics: The manner in which genetic differences among individuals are passed down from generation to generation

34
Q

•Describe and compare the theory of Blending Inheritance with Mendel’s Modern Transmission Genetics

A

• Blending Inheritance: Traits in offspring will resemble the average of the parents
• Medel’s modern transmission genetics: Traits are not transmitted in heredity units. In fact, there are many different principles of transmission genetics.

35
Q

Define a true-breeding organism:

A

True Breeding: Both Alleles are the same, completely Homozygous (Could be both Dominant and Recessive, but its usually dominant).

36
Q

•Describe the process of controlled pea plant mating

A

Model forced two parent plants to cross breed. Then, the F1 generation was self-breeding, and resulted in an F2 generation.

37
Q

Describe Mendel’s pea plant cross using Yellow vs Green seeds and how this trait (and the others he observed, Table 16.1) was passed down to F1 and F2 generations

A

Parental: Mendel combined a True-breeding strain with yellow seeds with a True-breading green seed.
F1 Generation: This generation only had offspring that made Yellow seeds. It was left to self-fertilize and make the next generation (F2).
F2 Generation: Resulted in Pea plants with both Yellow and Green Seeds.

38
Q

•Describe Mendel’s Principle of Segregation

A

Medel’s Principle of Segregation: Only one Allele for a particular trait ends up in an Organism’s Gamete.
* The other Allele for that particular trait will end up in another Gamete

39
Q

•Describe how Mendel’s Principle of Segregation relates to Meiosis, and more specifically to Anaphase I

A

Principle of Segregation: Separation of Alleles into different gametes
◦ Segregation takes place in Anaphase I when our Homologous Chromosomes are split apart after crossing over, and then later separated into two distinct cells.

So our Paired Homologous Chromosomes are split apart in Anaphase I,

In Anaphase II the sister chromatids of every chromosome are pulled apart to becomes separate, distinct Chromosomes. (We would double our chromosome count here, before the cell splits into two).

40
Q

Describe how a Test Cross can be used to determine the genotype of an organism

A

◦ Plants with an unknown genotype can be cross bred with a true-breeding recessive genotype, which will allow us to determine the genotype of the resulting specifies from its phenotypic expression.

41
Q

Describe incomplete dominance and know how traits that undergo incomplete dominance are passed down from the P  F1  F2 generations (including the genotype and phenotype ratios of each generation with respect to the trait)

A

Incomplete Dominance: Not all species exhibit the complete dominance that was originally observed in pea plants.
P Generation: (Rr) (Red flower) is Bred with a Homozygous recessive (rr) (White Flower)
F1 Generation: Expression of this generation is Rr (Pink Flower). If we leave it to self-fertilize we will have an Rr * Rr
F2 generation: Yields RR, 2 Rr, and rr. Which (one Red, two pink, one white).

42
Q

•Know the addition and multiplication rules, compare the circumstances under which each is applied, and know how to use the rules to calculate probabilities

A

Addition Rule: Used when outcomes being considered cannot occur simultaneously
Multiplication Rules: Used when the outcomes can occur simultaneously, and the occurrence of one has no effect on the likelihood of the other.

43
Q

Know the definition of Mendel’s Principle of Independent Assortment and compare it to Mendel’s Principle of Segregation

A

Mendel’s Principle of Independent Assortment: The Two alleles of each gene segregate into gamates independently of the two alleles of another gene

Mendel’s Principle of Segregation: Individuals inherit two alleles of each gene, one from the mother and one from the father, and when individuals form reproductive cells, the two alleles seperate equally into the eggs and sperm.

44
Q

Know how the Principle of Independent Assortment relates to Meiosis

A

◦ Independent assortment leads to very different diversification of genetic material and possible phenotypical expressions —> In meiosis’s it allows for all sperm cells and most egg cells to have different potentials.

45
Q

Describe the process of Epistasis and how it effects the phenotype of traits that undergo this process

A

Epistasis: Genes modify the expression of other genes. Sometimes this modification can prevent certain phenotypical traits from being expressed.

46
Q

Describe why patterns of inheritance are more complicated to study in humans

A

• Observing the segregation of alleles in humans is hard - because we have few children, and then Mendelian ratios are often obscured.

47
Q

Describe a pedigree and know how to read a basic pedigree chart

A

Pedigree: Used to look at the Human Patterns of Inheritance. Darkened symbols means effected, etc.

48
Q

•Describe and compare the pedigrees of dominant and recessive alleles

A

Dominant: Effects both genders equally, is present in all successive generations
Recessive: Skips one or more generations, affects both genders equally, affected individuals can have parents who weren’t effected.

49
Q

•Describe and compare Incomplete Penetrance and Variable Expressivity

A

Incomplete Penetrance: Individuals with a genotype corresponding to a trait do not actually show the phenotype either because of environmental effects or because of interactions with other genes.
Variable Expressivity: Phenotypes can be expressed with different degree of severity (Think of the dog with different amounts of spots).

50
Q

•Define genetic testing and describe the benefits and risks of using this technology

A

Genetic Testing: Used to Characterize an Individuals Genotype

Benefits: Personalized Medicine, Better understanding, Relieve some anxiety
Risks: Limited answers, Privacy Issues, Physiological/Emotional impact.

51
Q

•Define and describe the human sex chromosomes

A

Sex Chromosomes: Pair of unmatched chromosomes that determine an individuals sex (XX= Female), (XY=Male).

52
Q

•Describe the segregation of sex chromosomes into gametes

A

Female eggs only bear “X”, Sperm can either bear “X” or “Y”.