Exam II Flashcards
What is the name of Complex I? What reactions happen there? What is the net equation?
Complex I is NADH-Q oxidoreductase/NADH dehydrogenase There are three reactions: Rx 1: oxidation NADH Rx 2. Reduction of coenzyme Q Rx 3: proton pumping
Net reaction:
NADH + Q + 5H+ (matrix)»_space; NAD+ + QH2 + 4H+ (cytosol)
What is the name of complex II? What is the net reaction?
Complex II is Succinate dehydrogenase or succinate-Q reductase complex
Net reaction:
succinate + Q»_space;> fumarate + QH2 (without proton pumping)
What is the name of Complex III? What are its prosthetic groups? What are its P site and N site?
Complex III is CoQ-cytochrome c oxidoreductase or cytochrome b-c1 reductase
Heme c1, bL, bH, Reiske Iron-sulfur center
Positive site is where electron goes to reduce cytochrome c. Negative site is where electron forms radical.
What is the net reaction of the Q cycle of Complex III?
QH2 + 2 Cyt (ox) + 2H+ (matrix)»_space; Q + 2 Cyt c (red) + 4H+ (cytosol) (four protons are pumped out)
What is the name of complex IV? what does it do
Complex IV is cytochrome c oxidase or cytochrome oxidase. It transfers electrons to oxygen molecule from cytochrome C, which carries only one electron.
What is the net reaction of complex IV? Per NADH?
Net reaction:
4 cyt c (reduced) + O2 + 8H+»_space; 4 cyt c (oxidized) + H2O + 4 H+ (cytosol)
per NADH, however, since cyt is a one electron carrier and we needed four, and each NADH only carries two electrons, we pump 2 H+ into cytosol.
Summary of ETC reaction for NADH
NADH + 11 H+ (m) + 1/2 O2»_space; NAD+ + H2O + 10H+ (c)
Summary of ETC reaction for FADH2
FADH2 + 6 H+(m) + 1/2 O2»_space; FAD + H2O + 6H+ (c)
What are inhibitors of Complex I (3)?
Amytal, barbiturate
Rotenone, insecticide, pesticide and piscicide
MPP+, neurotoxic drug metabolite from MPPP
(ARM)
What is an inhibitor of Complex II?
Malonate, a competitive inhibitor of Complex II, from alfalfa leaves (melon)
What is an inhibitor of Complex III?
Antimycin A, produced by strep bacteria, binds to N site of Complex III (ANT)
What are inhibitors of Complex IV? (3)
cyanide, azide, carbon monoxide (Coconut)
disease caused by mutation to complex I?
LHON (blindness), Leigh Syndrome (impaired motor skills), MELAS
disease caused by mutation to complex II?
Leigh Syndrome
disease caused by mutation to complex III?
LHON, Encephalomyopathy
disease caused by mutation to complex IV?
encephalomyopathy, myopathy (muscle dysfunction)
delta G of oxidation of NADH?
-52.6 kcal/mol
What is the relationship between Gibbs Free Energy Change and the proton motive force?
proton motive force (deltaP) = deltaG/nF
The more deltaG, the more deltaP
What are four inhibitors of ATP synthase? How do they work?
oligomycin - binds to Fo, blocking protons from coming in
Aurovertin B - binds to Beta subunit, inhibits conformational change
DCCD - modifies carboxyl groups in protein
IF-1 - (upon onset of myocardial ischemic process) (stroke), what happens is the proton gradient has been flipped, so ATPase will now want hydrolyze ATP. IF-1 binds to the alpha, beta and gamma proteins of F1, preventing their conformation change. This is all under low oxygen conditions.
What are the four carriers of inner membrane of mitochondria? What do they transport?
ATP-ADP translocase (ANT) - ADP into m, ATP into c
Dicarboxylate carrier - Phosphate/Malate
Tricarboxylate carrier - Malate/Citrate + H+
Phosphate carrier - Phosphate/ OH-
What blocks the ATP/ADP exchange, inhibiting ATP/ADP exchange?
atractyloside and bonkrekic acid
How many cytosolic ATPs are produced per oxidation of 1 matrix NADH?
~2.5 cytoplasmic ATPs
How many cytosolic ATPs are produced per oxidation of 1 matrix NADH?
~1.5 ATPs
How does NADH from cytosol get into mitochondrial matrix of heart and liver cells? How many ATPs does it yield?
malate-aspartate shuttle
P/O ratio is ~ 2.5 ATPs
How does NADH from cytosol get into mito matrix of cells other than heart and liver? What is important about this carrier yield wise?
glycerol-3-phosphate shuttle
P/O = 1.5 ATPs
immediately reduces Q and goes into Complex III and IV
What is total ATP yield from complete oxidation of glucose?
Total 30 (or 32) ATPs
what is a chemical uncoupler? Name two examples.
A chemical uncoupler dissipates proton gradient across the inner membrane. Examples: aspirin overdose or DNP (2,4-dinitrophenol)
generation of hydroxyl radical
O2 + e-»_space; O2-
O2- + e-»_space; H2O2
Fe2+ + H2O2»_space; Fe3+ + OH* + OH-
OH* is hydroxyl radical, which can damage the cell, including DNA, and cause mutations
What are two defense mechanisms against ROS?
- superoxide dismutase (SOD)
adds hydrogen ion to radical and makes peroxide - catalase
turns H2O2 into oxygen and water
SOD and catalase work together - glutathione peroxidase
- antioxidant vitamins E and C
- Exercise»_space; ROS up»_space; defense mechanism up
**intake of antioxidant vitamins blunt exercise benefit
What are two types of Lou Gehrig’s disease? What does the disease do? what does amyotrophic mean?
mitochondrial version: manganese containing SOD (Mn-SOD)
cytoplasmic version: copper and zinc dependent SOD (Cu/Zn SOD)
Mutation in gene coding for cytosolic SOD (SOD1) causes familial ALS
this is a fatal neurological disease that attacks the nerve cells
amyotrophic - no muscle nourishment
(amyotrophic lateral sclerosis)
what does an apoptosis imbalance cause disease wise?
more new cells than cell death: neurodegeneration, immunodeficiency, infertility
more cell death than new cells: cancer, autoimmunity
what kind of enzyme is an oxygenase? what are the two types of oxygenases? what are their basic reactions?
oxidoreductase b. monooxygenase and dioxygenase c. monooxygenase RH + O2 + ZH2 >> ROH + H2O + Z dioxygenase R + O2 >> RO2
what are the co-substrates of a monooxygenase? a dioxygenase?
monooxygenase: NADH, NADPH, FMNH2, FADH2
dioxygenate: ascorbic acid
cytochrome P450: What kind of enzyme is it? What reactions does it catalyze? Where is it found? What synthesis does it catalyze? What kind of interactions does it cause
a. monooxygenase
b. hydroxylation, epoxidation and modification of hydrophobic compounds for their detox and excretion
c. in mitochondria and ER of cells in liver and most other tissue
d. it catalyzes the synthesis of steroid hormones and bile acids
e. causes drug interactions
how does cytochrome P450 metabolize ibuprofen?
basically, it adds a hydroxyl group to it.
ibuprofen»_space;P450 in liver»_space;add hydroxyl group to it
how does cytochrome P450 metabolize acetaminophen?
P450 oxidizes acetaminophen by turning its hydroxyl group into a ketone. This becomes N-Acetyl-p-bensoquinine imine. N-acetyl-p-bensoquinine imine needs glutathione to not remain thiolated (after reacting with another chemical) and become toxic to the liver. Via glutathione S-transferase, the thiol is turned in to S ether with glutathione. If there is too much of this, we run out of glutathione.
How does cyp 450 turn benzopyrene into a carcinogen?
We start with benzo(a)pyrene. CYP turns in into an epoxide, Benzo(a)pyrene 7,8 epoxide.
Epoxide hydrolase removes the epoxide and turns the molecule into a diol, Benzo(a)pyrene 7,8 diol.
CYP then takes that molecule and adds an epoxide to it, so it becomes Benzo(a)pyrene 7,8 diol,-9,10 epoxide.
Describe tyrosine synthesis. What enzyme is responsible and what kind of enzyme is it?
Phenylalanine hydroxylase, a monooxygenate, turns Phenylalanine into tyrosine
It adds O2 and results in H2O and tyrosine.
Describe phenylketonuria? What mutation causes it?
How is phenylalanine digested instead?
a. caused by mutation to phenylalanine hydroxylase
b. phenylalanine is digested via an alpha-ketoacid, making a phenylpyruvate, which becomes a phenylketone (in urine)
Describe serotonin synthesis. What enzyme is responsible and what kind of enzyme is it? what is the result of lowered serotonin levels in body?
Tryptophan hydroxylase, a monooxygenate, turns tryptophan into serotonin
low serotonin has been linked with depression
what two monooxygenases work in synthesis of catecholamines and how?
Tyrosine hydroxylase turns tyrosine into DOPA.
DOPA then becomes dopamine through a decarboxylase. Dopamine Beta hydroxylate turns dopamine into norepinephrine.
what monooxygenase plays a role in cholesterol synthesis and how?
In a long process that starts with FAs, squalene monooxygenase turns squalene to squalene epoxide.
what monooxygenases work in vitamin D synthesis? What disease is caused by Vitamin D deficiency?
a. in the liver, 25-hydroxylase adds a hydroxyl group to previtamin D3, making Vitamin D3 b. in the kidney, 1alpha hydroxylase adds a hydroxyl group at first carbon of vitamin D3, making calcitriol.
Rickets is caused by vitamin D deficiency.
what monooxygenase participates in nitric oxide synthesis and how?
nitric oxide synthase (NOS) turns arginine into N-omega-Hydroxyarginine by adding a hydroxyl group to it. This eventually becomes citrulline and nitric oxide.
what are the three types of nitric oxide synthases?
neuronal NOS: nNOS -signaling
endothelial NOS: eNOS - vasodilation
inducible NOS : INOS - immune reaction
what are the co-substrates of dioxygenases?
reducing agents such as ascorbic acid
what dioxygenase is involved in the inflammatory response?
Prostaglandin H2 Synthase = COX
by cyclo-oxygenase activity it turns Arachidonate into Prostaglandin G2.
by peroxidase activity, it turns Prostaglandin G2 into Prostaglanding H2
How do NSAIDS block inflammation?
NSAIDS inhibit prostaglandin H2 synthase, which is responsible for COX-2 activity. This activity is upregulated at the site of inflammation, causing pain and fever. NSAIDS block the COX-2 activity.
How do aspirin and ibuprofen inhibit COX? How does acetaminophen work?
aspirin esterifies the enzyme via covalent modification.
Ibuprofen binds to the active site of COX without covalent modification.
The target of acetaminophen is unclear.
What are three specific COX-2 inhibitors?
Celebrex
Vioxx -= off market for increased risk of cardiovascular events
Bextra - off market, cardiovascular events
what dioxygenase plays a role in collagen modification? what does it do? what happens if there is a deficiency in the enzyme’s co-substrate?
Prolyl 4 hydroxylase
with the cosubstrate ascorbate, it turns alpha-ketoglutarate to 4-hydroxyprolyl residue
cosubstate vitamin deficiency causes scurvy.
what kind of enzyme turns beta-carotene into vitamin A and Rhodopsin? What are diseases associated with vitamin deficiency?
dioxygenase
night blindness, xerophthalmia (pathologic dryness of the conjunctive and cornea)
What is MEOS? How is cytochrome 450 involved?
microsomal ethanol oxicizing system in liver;
cyp 450 2E1 metabolizes alcohol and generates reactive species like superoxide anion radical, peroxide, etc.
what are two types of mtDNA mutations?
DNA insertion or deletion mutations
- frameshift mutations/chain termination
- total or partial loss of genes
DNA base substitution mutations
- in proteincoding genes
- amino acid substitution
- polypeptide chain termination - in tRNAs or rRNAs
- protein synthesis compromised globally
what is LHON? what causes it?
maternally inherited form of an acute adult onset blindness due to the death of optic nerve
primary: complex I
other: Complex III, IV, V