Exam 3 Review Flashcards
In what organelle does glycosylation occur?
Glycosylation begins in the endoplasmic reticulum and continues in the Golgi apparatus
Which type of glycoproteins are more frequent: O-linked or N-linked?
N-linked are more frequent than O-linked
What is the consensus sequence?
Asn - X - Ser
where X is any AA except proline
This is the site of carbohydrate attachment to N-linked glycoproteins
Why is the oligosaccaride stem the same in many glycoproteins?
They are all generated from the same process in the endoplasmic reticulum
What is erythropoietin (EPO)?
A renal hormone that is stimulated by hypoxia
Stimulates red blood cell production (used for blood doping)
Has three major sugar moieties, which, if removed, decrease red blood cell production
In proteoglycans, which part is the functional part?
The sugar is the functional part unlike in glycoproteins
Describe the structure of proteoglycans in cartilage
proteoglycans bind to a central stem structure
G1 binds to the carbohydrate stem, hyaluronan
Disacharide structures (between G2 and G3) interact with H2O to form a gel like structure
After exiting the ER, where do vesicles transport proteins to?
The golgi aparatus
Describe the different components of the Golgi apparatus
- cis* Golgi network (from ER)
- cis* cisterna
medial cisterna
- trans* cisterna
- trans* Golgi network (towards plasma membrane)
What molecule addresses proteins to the lysosome?
Mann-6 P
What is the function of glycosyltransferases?
They catalyze the formation of glycosidic bonds
What is aglutination?
Red blood cells are clumping up
Which blood type is the universal receptor and which is the universal donor?
AB positive is the universal receptor
O negative is the universal donor
In A-type blood, what antigens are found?
anti-B antigens
What are Lectins?
Sugar binding proteins
Usually have a Ca2+ cofactor
What are the membrane glycoproteins associated with influenza virus?
Hemagglutinin (H) recognizes carbohydrates on the cell surface; useful for getting in
Neuraminidase (N): cuts glycosydic bonds with RNA release; useful for getting out
What do neuraminidase inhibitors do?
They trap the influenza virus within the cell that it infects
Do lipids form polymers?
No, lipids do not form polymers, they form together via hydrophobic interactions
What are the biological roles of lipids?
- Fuel
- Building blocks
- Thermal insulator
- Special tasks
Describe the difference between saturated and unsaturated fatty acids
Saturated have no double bonds, unsaturated have one or more double bonds
Describe the general structure of fats
fatty acid chains attach to a glycerol molecule
Phospholipids have 2 fatty acid chains and a phophate group attached to a glycerol
On which sides of membranes are glycolipids found?
They are only found on the extracellular side of the membrane
What are the functions of glycolipids?
Help protect membrane from harsh conditions
Charged glycolipids can influence electric field across membranes and ion concentration
Cell-cell recognition
Which membranes contain cholesterol?
All membranes except the inner mitochondrial membrane.
What role does cholesterol play in membranes?
It keeps fatty acids apart and prevents crystalization in low temperatures
How does saturation change how membrane lipids pack?
Saturated fatty acids are able to pack tighter into solids
Unsaturated fatty acids have lower melting points, are more fluid
What is a sphingosine?
An amino alcohol with a long hydrocarbon chain
What are the structural differences between triacylglycerol and sphingophospholipids?
The sphingophospholipid comes with a lipid chain as part of the sphingosine molecule
What type of bond is present in phosphoglycerides?
An ester bond between the phosphate group and the hydroxyl group of the alcohol
What molecule are glycolipids derived from?
Sphingosine
Explain how cholesterol fits into the membrane
The hydroxyl interacts with the phospholipid head groups and the nonpolar hydrocarbon tail fits between the lipid hydrocarbon tails
Describe the structure of a micelle
The hydrophobic tails all interact forming a sperical molecule with the polar heads all facing out interacting with water.
Describe the structure of a lipid bilayer
It has a hydrophobic interior that acts as a permeability barrier
It is formed spontaneusly because of hydrophobic interactions and can develop into cells w/ a large diameter
This conformation is favored over micelle
Which molecules are able to pass through the membrane and which cannot?
Small molecules can freely pass through the membrane, but large molecules and ions cannot
What type of amino acids make up transmembrane regions of membrane proteins?
Mostly nonpolar amino acid residues
Describe the structure of a pore
The outside surface is nonpolar and the inside surface is polar.
They have a hydrophilic channel through the middle, allowing for substrates to pass through
How are integral membrane classified?
Type I through VI are distringuished by which end sticks out and in which direction
Type III: one protein with many transmembrane domains
Type IV: many proteins grouped together each with a transmembrane domains
What is Prostaglandin H2 synthase-1?
I membrane protein with a hydrophobic channel.
This channel is blocked by aspirin to aleviate headaches
How many amino acid residues does it take for an alpha helix to span the membrane?
About 20 amino acid residues will span the membrane
What is a hydrophobicity plot?
A plot of the free energy of transfer to water in a shifting window along the primary sequence of a protein.
Peaks with values greater than +84 kJ/mol have a high chance of being part of an alpha helix, and thus in a transmembrane domain
How does the viscosity of the membrane compare to that of H2O?
It is ~100x higher
What are the three ways that lipids can move throughout a membrane?
They can rotate in place or diffuse laterally
Can also flip-flop (but very rare)
What enzyme catalyzes the flip-flop movement of lipids?
flipases
What is the function of a scramblase enzyme?
They allow the bilayer to grow evenly by translocating lipids from the inner membrane to the outer membrane (or vice versa)
What factors increase membrane fluidity?
More cis double bonds
Shorter hydrocarbon chains
Less cholesterol
Higher temperature
How does cholesterol help with temperature regulation?
The amount of cholesterol in the membrane changes to help deal with temperature changes
How do charged ions usually get through the membrane?
Through channels or transporters
Describe the relative concentrations of Na+ and K+ inside and outside of the cell
The ICF has low Na+ and high K+ compared to the ECF
Describe the electrochemical gradient
The difference in the concentration of the solute between the two sides of the membrane
The charge or valence of the solute molecule
The difference in voltage between the two sides of the membrane
**Membrane potential can be opposite direction of chemical gradient.
What is the equation for diffusion of ions across the cell membrane?
ΔG = RT ln(c2/c1) + zFΔV
How are primary and secondary active transport related?
Secondary active transport requires gradients created by primary active transporters
What are the three types of ATP pumps?
P-type
F-type
ABC transporter
What is a P-type ATP pump?
The actual protein is phosphorylated
Couples free energy of ATP hydrolyses to an interconversion between two conformations, allowing a substrate to pass through
What is an F-type proton pump?
The pump is phosphorylated, but it uses ATP
ex: in lysosomes