Exam 3 Practice Questions Flashcards
Where does glycolysis occur in a eukaryotic cell?
The cytoplasm
In glycolysis, what type of enzyme catalyzes the conversion of glucose-6-phosphate?
A kinase
Define Kinase
An enzyme involved in phosphoryl group transfer
In glycolysis, what type of enzyme catalyzes the conversion of glucose-6-phosphate to fructose-6-phosphate?
An isomerase
isomerase: Conversion between isomers
In glycolysis, how many ATP are required to convert 1 molecule of glucose to a molecule of glyceraldehyde-3-phosphate and dihydroxyacetone phosphate?
2 ATP required
*** At this point, no ATP have been generated
In glycolysis, 1,3-biphosphoglycerate is converted to 3-phosphoglycerate by the enzyme phosphoglycerate kinase. What other reaction is coupled to this process?
ADP –> ATP
The net reaction of 1 glucose molecule that is converted to 2 molecules of pyruvate results in the production of how many molecules of NADH?
2
This reaction happens 2x per glucose
The net reaction of 1 glucose molecule that is converted to 2 molecules of pyruvate results i the NET production of how many molecules of ATP?
2 molecules of ATP
= -2 molecules of ATP expended
+4 molecules of ATP generated.
Total yield = 2
In the presence of 02, pyruvate will be converted predominantly to which molecule?
Acetyl CoA
What is the most direct purpose of the conversion of pyruvate to ethanol under anaerobic conditions in organisms that do fermentation?
To regenerate NAD+
Gluconeogenesis utilizes a lot of the same reactions as glycolysis but in reverse. There are however a few unique steps in the gluconeogenesis pathway. What intermediate is seen in the pathway of gluconeogenesis that is not seen in glycolosis?
Oxaloacetate
In the Cori cycle, _____ is converted to _____ in the liver
Lactate, glucose
In gluconeogensis, fructose 1,6-biphosphate is converted to fructose-6-phosphate by what class of enzyme?
phosphatase
When pyruvate is converted to acetyl CoA, what are the other products of the reaction?
NADH and CO2
Coenzyme A contains what organic functional group that binds acetyl groups?
Thiol
The condensation of acetyl CoA with oxaloacetate to form citrate is catalyze by what type of enzyme?
Synthase
The oxidation of isocitrate to form alpha-ketoglutarate is catalyze by what type of enzyme?
Dehydrogenase
How many CO2 are released for every acetyl CoA that is metabolized via the TCA cycle?
2
Approximately how many equivalents of ATP are generated (both directly and indirectly) per every acetyl CoA that is metabolized via the TCA cycle?
10 equivalents
A function of the glyoxylate cycle is:
to allow acetyl CoA to be converted into glucose
Complexes I, II, and III of the electron transport chain all contain what common cofactor?
Fe-S clusters
Which complexes in the electron transport chain contribute to the proton gradient that is established across the inner mitochondrial membrane?
Complexes I, III, And IV
NOT II
How many electrons are required to reduce 1 molecule of O2 to 2 molecules of H2O?
4
In the Boyer binding change mechanism for ATP synthase, proton passage through the protein complex results in ________
rotation of the Y subunit
Which form of electromagnetic radiation would have the highest energy per photon?
red vl, violet vl, in waves, microwaves, radio waves
Violet visible light
chart as follows lowest to highest energy:(lowest) rad, mic, in waves, R O Y G B V (highest)
Electrons are transferred from the special pair of chlorophyll molecules in photosystem II p680 most directly to which molecule?
plastoquinone
The water oxidizing complex, or oxygen evolving complex, contains which metal ion cofactor?
Manganese (Mn)
In the series of light dependent reactions, electrons are ultimately transferred from ________-
H20 to NADP+
If one mol of O2 was produced via the light dependent reactions in photosynthesis, how many mol of NADPH were produced?
2
Which scientist determined the series of steps for the reduction of CO2 to glucose in photosynthetic organisms?
Calvin
How many molecules of ATP and NADPH would be required to fix 6 molecules of CO2 via the Calvin cycle?
18 ATP, 12 NADPH
How many molecules of ATP and NADPH are required to fix 1 molecule of Co2 via the calvin cycle?
3 ATP 2 NADPH
The first step in the storage of glucose as glycogen is the conversion of glucose-6-phosphate to glucose-1-phosphate. What type of enzyme catalyzes this reaction?
Mutase
Mutase: catalyzes shift of functional group from one position to another within the same molecule
Glycogen synthase and glycogen phosphorylase are regulated by phosphorylation and coordinate regulation.
Which of the scenarios below could describe the coordinate regulation of these two enzymes?
phosphorylation activates glycogen phosphorylase while making glycogen synthase less active.
De-phosphorylation activates glycogen synthase while making glycogen phosphorylase less active
One function of the pentose pathway is to:
make NADPH
The reactions of glycolysis convert one molecule of glucose to _____.
2 molecules of pyruvate
Describe the group of enzymes termed kinases:
Kinases catalyze the transfer of a phosphoryl group from one molecule to another
Define phosphates
Phosphatases catalyze the removal of a phosphoryl group from a substrate
Define mutases:
Mutases catalyze the intramolecular transfer of a phosphate group from one position to another on a substrate molecule.
Define dehydrogenases
dehydrogenases catalyze the transfer of electrons between two substrates
define isomerases
isomerases catalyze the interconversion of two isomers
In glycolysis, what type of enzymes catalyzes the conversion of glyceraldehyde-3-phosphate to 1,3-biphosphoglycerate
dehydrogenase
in the conversion of fructose-6-phosphate to fructose-1,6-bisphosphate, what other molecule serves as a cosubstrate?
ATP
The conversion of 1 molecule of glucose to 2 molecules of pyruvate results in a net release of how many molecules of CO2?
0
What is the function of glyceraldehyde-3-phosphate dehydrogenase? (Hint: You do not need to know the specific reaction catalyzed by this enzyme to answer this question.)
oxidation by NAD+ to form NADH and an acyl-phosphate
The regeneration of ____ in the reduction of pyruvate to lactate sustains glycolysis under anaerobic conditions.
NAD+
In the gluconeogenesis pathway, the conversion of pyruvate to phosphoenolpyruvate involves all of the following as substrates or products except ______.
NADH
What is the major tissue in which gluconeogenesis takes place?
liver
CoA contains what functional organic group that binds acetyl groups?
thiol
Pyruvate dehydrogenase catalyzes the conversion of pyruvate to acetyl-CoA. Another product in this reaction is _____
NADH
Pyruvate dehydrogenase catalyzes the conversion of pyruvate to acetyl-CoA. Another product in this reaction is ____
CO2
Which of the following is not a cofactor or cosubstrate of pyruvate dehydrogenase?
ATP
What is the first step of the TCA cycle?
Condensation of acetyl-CoA with oxaloacetate to form citrate
Which enzyme catalyzes the condensation of acetyl-CoA with oxaloacetate to form citrate
citrate synthase
What is a synthase?
enzyme that catalyzes the linking of two molecules
What does TCA cycle stand for?
Tri carboxylic acid cycle
What is the second step of the TCA cycle?
The rearrangement of citrate to isocitrate
What is aconitase?
A moonlighting enzyme that has a cofactor for Fe-S clusters
***this is important as 1. it regulates this step (2) of the TCA cycle and 2. the protein synthesis in iron transfer into the cell and iron storage
- Iron in your cells is not a good thing, typically bound to ferritin, apoaconitase can make ferritin
moonlighting: two different jobs within the cell
In the next step of the TCA cycle (3), isocitrate and NAD+ are converted to a-ketoglutarate and NADH.
What type of enzyme do you think catalyzes the reaction?
Dehydrogenase
In the conversion of isocitrate to a-ketogluatarate (3), what happens?
2 electron oxidation couples to reduction of NAD+
Release of CO2
What is the function of a dehydrogenase?
Catalyze oxidation-reduction reactions by transferring electrons to electron acceptor
How many carbons are in isocitrate?
6
How many carbons are in a-ketoglutarate?
5
What is step 4 of the TCA cycle?
The conversion of a-ketoglutarate to succinyl CoA
What happens in step 4 of the TCA cycle?
2 electron oxidation couple to reduction of NAD+
Release of CO2
Formation of thioester bond with CoA
How many Carbons does succinyl CoA contain?
4
What are the 3 elements of the a-ketoglutarate dehydrogenase complex?
TPP
Lipoamide
FAD
What happens in step 5-end of the TCA cycle?
Succinyl CoA is converted back to oxaloacetate
In the next step of the TCA cycle, succinyl CoA (which contains a high potential energy thioester bond) is converted to succinate. What other reaction would you predict may be couples to this process?
ADP + P(i) –> ATP
What is the only step in the TCA cycle where substrate level phosphorylation occurs?
Succinyl CoA to succinate
***only step that yield GTP (ATP) directly
In the next step of the TCA cycle, succinate and FAD are converted to fumarate and FADH2. What types of enzyme do you think catalyzes this reaction?
dehydrogenase
What occurs in the succinate to fumarate part of the TCA cycle?
2 electron oxidation couples to reduction of FAD
Succinate dehydrogenase is embedded in the inner mitochondrial membrane (Complex II)
this serves as a direct link to the tca cycle and oxidative phosphorylation
In the last step of the TCA cycle, malate is converted to oxaloacetate, what happens?
2 electron oxidation coupled to reduction of NAD+ ATP: 1 NADH: 3 FADH2: 1 CO2:2
In the net overall TCA cycle, what is produced per glucose?
4 CO2
6NADH
2 FADH2
2 GTP (ATP)
How many electrons does it take to fully oxidize our carbon?
24
T/F The reactions of the electron transport chain can be uncoupled form ATP synthesis.
True, this is found in animals with brown adipose tissue.
Mitochondria contain UCP-1 that transports H+ to the matrix without the concurrent synthesis of ATP-short circuits the mitochondrial proton “battery”
This is the name given to the hypothesis proposed by Peter Mitchell to explain how ATP synthesis is coupled to electron transport.
Chemiosmotic theory
If 4 mol of H+ move through ATP synthase for each ATP that is produced, the how many mol of ATP are made for each 1 mol of NADH oxidized?
2.5 mol ATP per 1/NADH
ATP synthase of the mitochondrial electron transport chain uses the energy contained in the H+ gradient to ______
release ATP bound to the complex after synthesis
Define photosynthesis:
The transformation of electromagnetic energy to chemical energy
What happens in light reactions?
oxidation of water to produce O2 coupled to the reduction of NADP+ to make NADPH
What are light reactions used for?
- transfer of electrons also coupled to the movement of H+ across the membrane
- proton gradient used to synthesize ATP
- some organisms use electron donors other than H2O
What are photosynthetic pigments?
molecules capable of absorbing the energy of light of a specific wavelength
T/F objects appear the color of the light that is reflected (not the light that is absorbed)
True
The inner membrane of the chloroplast surrounds a space called the _____
stroma
How many moles of O2 are evolved in the plant light reactions for each mole of NADPH produced?
0.5
One of the functions of cytochrome b6f in the plant photosynthesis system is to ________
translocate protons across the thylakoid membrane
The portion of the photosystem II complex that acts directly to oxidize water is ______
Mn cluster
Photosystem I directly oxidizes what molecule?
Plastocyanin
Where does the calvin cycle occur?
the stroma of chloroplasts