Exam #3 Flashcards
what are the three domains of life?
-eukaryota
-bacteria
-archaea
generally, what type of organisms are eukaryotes?
fungi, protists, plants, and animals (membrane bound organelles with nucleus)
what type of organisms are prokaryotes?
archaea and bacteria (don’t have membrane-bound organelles)
describe the kingdom protista
very diverse eukaryotes that are a part of an “other” category that aren’t plants, animals or fungi; some can move and photosynthesize, some form colonies such as slime molds and kelp.
describe the soil trophic levels
primary producers –> primary consumers (herbivores) –> secondary consumers –> tertiary consumers
decomposers: consume all dead organic matter and release plant nutrients (all trophic levels)
primary decomposers:
>detritivores: eat dead or digested plant debris
>saphrophytes: eat dead or digested plant and animal debris (responsible for most decomposition)
what are the different size classes of soil organisms?
- macro-organisms (>2 mm)
- meso-organisms (0.1-2mm)
- micro-organisms (<0.1mm)
what organisms are considered macro-organisms?
-plant roots
-burrowing animals
-earthworms
-ants and termites
__________ _______ are macro-organisms which are ____-____ of plant mass. they are ___-______ um in diameter
plant roots
30-50%
10-400
how do plant roots enrich SOM?
roots enrich SOM with:
exudates: dissolved organic compounds exuded by roots
ex: acids, sugars, mucigel, shedded cells, dead roots
-root respiration (1/3 to 1/2 of soil CO2)
-create biopores
what is the rhizosphere? what does the rhizosphere has more of compared to non-rhizosphere soil?
zone most affected by roots (2-3cm of roots)
the soil in the rhizosphere has
-more SOM (more sugars)
-more chelates –> increased complexation
-lower nutrients (more acids)
-lower O2, more CO2 (due to more respiration)
-lower aeration
(compared to non-rhizosphere soils)
describe burrowing animals that contribute to macro-organisms and how they impact soils
diverse species and trophic levels: mammals, reptiles, insects, and amphibians (multiple ecological roles: detritivores, predators, and herbivores)
soil impacts: translocate and mix soil, create networks of biopores, and aerate soils
ants and termites have multiple ecological roles (herbivores, predators and detritivores), how do their nests impact soils?
-improved soil aeration
-increased infiltration
-modify soil pH
-local enrichment of nutrients
(habitat for ants: temperate, for termites: hot, dry)
what habitat are earthworms (Annelida) found in? what are their functions?
cool, moist aerated soil with neutral pH; most abundant animal microorganism in moist humid regions.
functions: mix soil particles and nutrients, improve soil structure (increase aggregation)
what are different types of meso-organisms?
rotifers
springtails and mites
tardigrades (“water bears”)
nematodes (unsegmented worms found in almost all soils)
protozoa
describe protozoa and where you might find them
mobile, unicellular eukaryotes of the kingdom protista (some photosynthesize). they are predators who eat bacteria, 4-250 um in size. habitat: prefer moist, aerated surface soils
what 4 things do all organisms need to survive?
-electron acceptor (oxidizing agent)
-carbon source
-water
-mineral nutrients
where do autotrophs get their carbon/energy from?
C from inorganic compounds (CO2 or CO3 2-)
where do heterotrophs get their carbon/energy from?
C from organic compounds (with C-C and C-H bonds)
where do chemotrophs get their energy from?
energy (e-) from chemicals
where do phototrophs get their energy from?
energy (e-) from light
what are chemoheterotrophs?
energy source from biochemical oxidation and carbon source from organic materials (all fungi, all animals, most bacteria)
what are chemoautotrophs?
energy source from biochemical oxidation and carbon source from CO2 (deep ocean microbes, N + S oxidizers)
what are photoheterotrophs?
energy source from sunlight and carbon source from organic materials (some bacteria, algae and protists)
what are photoautotrophs?
energy source from sunlight and carbon source from inorganic CO2 (algae, cyanobacteria, and higher plants)
what 8 environmental conditions affect soil microbial growth and activity?
- organic substrates
- nutrient substrates
- oxygen/redox status
- temperature and sunlight
- moisture
- pH
- salinity
- toxins
what is the Baas-Becking Hypothesis?
everything is everywhere but the environment selects
most soil microbes prefer when soil water content is near ________ __________
field capacity (too dry = microbes can’t get water or solutes)
how does soil aeration affect soil microbes?
good aeration –> aerobic microbes dominate = faster growth and decomposition
too much water (saturated) –> low aeration (low O2)
–> anaerobic respiration = slower growth and decomposition
(alternative electron acceptors = NO3-, SO4 2-, Fe3+, and Mn4+)
what is the ideal pH and temperature range for soil microbes?
optimal pH is near 7 (fungi tolerate acidic conditions well)
temperature:
-thermophiles (55-65 degrees C)
-mesophiles (25-37 degrees C)
-psychrophiles (15-20 degrees C)
simple substrates are decomposed _____ _______ than complex substrates, like cellulose and lignin.
_________ decompose cellulose and lignin more effectively than __________
more rapidly
fungi
bacteria
what are algae, what effect do algae have on soils, and what habitat are they found in?
photoautotrophs (protista and plantae, 2-20 um)
soils effects: add OM and microbiotic crusts
habitat: need a fairly moist environment and mostly at soil surface (for light)
what are slime molds? where are they found in the soil?
protists (eukaryotes): amoeba-like cells that spend most of the time as single cells; they form colonies.
-colonies form networks and possibly also think
ecology: feed on bacteria and can congregate together into 0.1mm mounds
habitat: live in O and upper A horizons
what are fungi? what impact does fungi have on soils?
eukaryotes; most are filamentous (hyphae = root-like filaments) (mycelia = woven hyphae) can be uni- or multi- cellular. (yeasts, molds, mushrooms)
-chemoheterotrophs (mostly saprophytes)
soil impacts:
-slow steady decomposers
-soil aggregate binding with hyphae
what are mycorrhizae?
fungi that form a symbiosis with plants (found in 90% of plant species’ roots)
-plant roots provide sugars and a home for fungi
-mycorrhizae provides plants with nutrients, drought tolerance, and pathogen protection
there is also ___________ fungi that eat __________
predatory
nematodes (releases enzymes to break down the nematodes)
describe bacteria and archaea
-no cell nucleus, asexual reproduction
-very common in soils, esp. bacteria
-smaller than protists and fungi (~0.5-5um)
-the most numerous and diverse organisms as we know it
what are actinomycetes? where are they found?
filamentous bacteria (0.5-5um in diameter) that are unicellular heterotrophs
-habitat: most soils, especially arid (alkaline, dry soils)
what functions do actinomycetes do?
- OM decomposition
- produce antibiotics
- some are N-fixers
- produce geosmin (a molecule that “smells like rain”
what are cyanobacteria (blue green algae)? what habitat are they found in?
prokaryotes (most common photoautotrophs)
-no chloroplasts (first photosynthesizers to evolve)
habitat: primarily aquatic, soil surface (0-0.5cm), biological soil crusts
prokaryotes ______ to soil ________
adsorb to soil particles (bacteria has a net negative charge and is adsorbed through a cation bridge)
what are soil viruses?
contain RNA or DNA with protein exterior
smaller than prokaryotes (most are <0.1um)
list main soil organisms from largest to smallest
-earthworms, ants and termites (largest)
-nematodes, mites and springtails
-protists
-fungi
-bacteria and archaea
-viruses (smallest)
what are lichens?
a mutualistic symbiosis between algae and fungus and they form the basis of the food chain in some areas.
what are cryptobiotic soil crusts?
mutualistic communities of cyanobacteria, mosses and lichens, common in desert soils and they protect soil from erosion, and they provide a significant amount of N to the ecosystem
how do microbes help plants?
-SOM formation
-nutrient cycling
-toxin breakdown
-disease suppression
how do microbes harm plants?
-herbivorous nematodes
-soil-bourne plant diseases
-deleterious rhizobacteria
what are 3 mutualistic plant-microbe relationships?
- rhizobia
- rhizobacteria
- mycorrhizae
what are rhizobia?
symbiotic N-fixing bacteria in legume root nodules (convert unavailable N2 from atmosphere to available NH4+)
what are rhizobacteria?
all bacteria adapted to living in the rhizosphere (mutualistic, parasitic or commensalism)
what are mycorrhizae?
symbiotic fungi found in/on most plant roots (increase P uptake and provide fungi with sugars)
____________ _____________ soils have very healthy microbial populations that help suppress plant pathogens
disease suppressive
microbes can let plants know that there are ___________ and allows the plant to release ________ ___________ against the pathogen (induced systematic resistance)
pathogens
chemical defenses
what does net carbon pool size equal?
change in C = C input - C output
what is the difference between organic C and inorganic C?
organic C has C-C and C-H bonds (in SOM: microbial biomass, humus, and detritus)
inorganic C does not have C-C and C-H bonds (soil carbonates: primarily CaCO3 and MgCO3)
what is SOM?
material derived from living things in various stages of decomposition (+ microbes)
what does SOM equal?
SOM = microbial biomass (living microbial tissue) + detritus (nonliving tissue from plants, animals, fungi, prokaryotes) + humus (decomposed, amorphous, and compost-like)
what soil order has the lowest organic matter?
oxisol; in a warm, moist environment like a tropical rainforest, microbes decompose fresh detritus very fast, and the outputs are just as high as the inputs
what is the difference between humus and detritus?
detritus: un-decomposed dead roots and other recognizable plant residues (or manure)
humus: mostly large, complex organic molecules with some less complex organics, mostly colloidal with high CEC, amorphous, brown and mushy
what is decomposition?
physical breakdown and chemical transformation of large organic molecules into simpler compounds, and synthesis of new compounds from these simple compounds
what are 4 chemical decomposition processes?
- oxidation: C –> CO2, CH4 + 2O2 –> CO2 + 2H20
- release: insoluble (solid, not bioavailable) –> soluble (solution, bioavailable)
- synthesis: of new “humic” compounds (tissues, secondary metabolites) by microbes (humification)
- protection: protecting new or partially broken-down compounds through physical or chemical means
what type of molecules decomposes slower and faster?
simpler and smaller molecules decompose faster:
sugars, starches and simple proteins (fastest)
crude proteins
hemicellulose
cellulose
fats and waxes
lignin’s and phenolic compounds (slowest)
what is mineralization?
conversion of a nonmetal from organic to inorganic form (organic nutrient = nutrient bonded to C)
-breaks bond between the nutrient (P, N, S) + C, causing the nutrients to become more plant available
the ______ nitrogen there is in a soil, the faster the decomposition rate
more
_________ and ________ have a C/N ratio of 5-10:1
microbes and manure
-manure has C/N ratio ~6:1 because it has so many microbes
-bacteria/archaea > actinomycetes/nematodes > fungi
_______ and ___________ have a C/N ratio of 8-15:1
SOM and compost
-SOM C/N is lower for subsoils than surface layers
(O horizons have higher C/N ratios of ~40:1)
________ __________ have a C/N ratio of 13-600:1
plant residues
-legumes have ________ –> more N –> ________ C/N ratios
-younger and greener plants –> ______ proteins –> _______ C/N ratios
-older, woodier –> _______ lignin –> ________ C/N ratios
rhizobia, lower
more, lower
more, higher (slower decomposition)
_________ C/N ratio = faster decomposition
_________ C/N ratio = slower decomposition
lower
higher
what happens when C/N ratio is more than 25:1?
-N becomes limiting factor to microbial growth
-net N immobilization: inorganic N –> organic N (organic N is N bonded to C)
what happens when the C/N ratio is less than 15:1?
-N not limiting at first –> very rapid decomposition
-net N mineralization: organic N –> inorganic N (ammonium or nitrate which is readily available for plant uptake) (mineral N = inorganic N)
what is priming?
stimulation of SOM decomposition following addition of fresh C substrates
______________ turns out to be more important than chemical composition on the effect of SOM
protection
what is protection?
microbes that are prevented from accessing and hence decomposing SOM
what is the difference between chemical and physical protection?
chemical protection occurs when SOM is actually stuck between clay particles and is chemically adsorbed to clay versus physical protection is when SOM is physically surrounded by silt or clay particles and the microbe can’t reach it
what are Terra Preta soils?
“Amazonian dark earths”, soil rich in SOM and char
what is black carbon?
carbon in char, charcoal, soot; degrades very slowly
-pyrolysis (“charring”)
-pyrolysis + oxidation –> combustion (produces oils, gasses, and char)
black carbon, including char is made up of what?
pyrolyzed (incompletely combusted) organic materials, usually plants
what soil order is heavy in char?
mollisols
what biochar?
char for adding to soil (helps acidic soils; its structure enables a very slow decomposition rate)
what are the three soil organic matter carbon pools?
- active: fast cycling, labile (largest pool)
- slow: semi-recalcitrant (medium pool)
- passive: very slow cycling, very recalcitrant (smallest pool)
in general, SOM ___________ exponentially with increased depth (except for spodosols)
decreases
with increased drainage, there is _______ aeration, _______________ decomposition and _______SOM
increased
increased
less
with decreased drainage, there is __________ aeration, __________ decomposition and ______ SOM
decreased
decreased
more
drainage of thawed permafrost + wetlands causes what
release of CH4 and CO2 (GHG’s)