Exam 3 Flashcards
How do plants store glucose?
As starch: Amylose or Amylopectin
What is the structure of amylose?
An unbranched polymer made up of only a1-4 linkages
What is the structure of amylopectin?
A branched polymer that has a1-4 linkages along with a1-6 branch points every ~30 residues
How do animals store glucose? What is the structure?
Glycogen - similar structure to amylopectin, but the branch points are every 8 to 12 residues
What is cellulose? What is its’ structure?
Cellulose is the primary component of plant cell walls. B1-4 linkage.
What is chitin? What is its’ structure?
Chitin is the primary component of exoskeletons. B1-4 linkage of N-acetylglucosamine.
How do cellulose & chitin strengthen microfibrils?
Cellulose and chitin straight chains have extensive H-bonding that strengthen the fibrils.
What is a N-linked protein?
Oligosaccharide is attached to an Asn side chain
What is an O-linked protein?
Oligosaccharide is attached to a Ser or Thr side chain
Why is the purpose of glycoproteins?
Since a wide variety of oligosaccharide modifications are possible, they can serve as unique identifiers for cells.
How are ABO blood types determined?
ABO blood type is determined by part of an O-linked oligosaccharide on the cell surface.
What blood types have a sugar being added and why?
Differences in a few active site residues of a glycosyltransferase result in a different sugar being added to the O antigen in A- and B-type individuals.
Why don’t O type individuals have a sugar added?
No functional version of the glycosyltransferase
What is connective tissue made up of?
Connective tissue such as cartilage, skin, and tendons include proteoglycans which are structural proteins linked to glycosaminoglycans
Why is the structure of glycosaminoglycans useful in connective tissue?
The polar groups on glycosaminoglycans attract H2O to help lubricate tissue, while negative charges repel each other upon compression to act as shock absorbers.
What is the structure of glycosaminoglycans?
Glycosaminoglycans are heteropolysaccharides consisting of repeating uronic acid and hexosamine residues.
What is the structure of the peptidoglycan layer in bacterial cell walls?
Peptidoglycan consists of N-acetylglucosamine and N-acetylmuramic acid repeating units attached to cross-linked tetrapeptides.
What is catablosim?
Breaking down larger molecules.
What is Anabolism?
Building complex molecules at the expense of energy.
How are biopolymers digested?
Enzymes hydrolyze biopolymers into smaller products that may be absorbed by the intestine.
How are proteins degraded outside cells?
The lysosome is an organelle containing degradative enzymes that primarily breaks down extracellular or membrane proteins.
What is the proteasome?
The proteasome is a multisubunit protease that targets intracellular proteins.
How does the proteasome know which proteins to degrade?
Ubiquitin ligase transfers a small protein, called ubiquitin, to a Lys residue of the target protein. Once 4 ubiquitins have been added, the end cap subunits of the proteasome recognize the target protein for degradation.
What is the role of Vitamin C in the body?
Vitamin C is an antioxidant and acts as a cofactor for the enzyme that hydroxylates proline residues in collagen.
What is the role of Vitamin B1 in the body?
Thiamine (precursor for B1) is a cofactor for the pyruvate dehydrogenase complex and a-ketoglutarate dehydrogenase.
What does a deficiency in Vitamin B1 do?
Leads to beriberi which is characterized by weakness and leg swelling.
What redox cofactors are used to conserve energy?
The phosphorylated form (NADP+/NADPH) is generally used as redox cofactor in biosynthetic pathways.
What is the role of Vitamin B3 in the body?
Niacin is a precursor for NAD(P)+/NAD(P)H.
What does a vitamin B3 deficiency lead to?
Pellagra which is characterized by diarrhea, dermatitis, dementia, and death.
What is Ubiquinone/ Coenzyme Q?
A lipid soluble electron carrier used as redox cofactor to conserve energy. A mobile electron carrier that often receives electrons from an FADH2 prosthetic group.
What are flavins?
Flavins are prosthetic groups that can carry 1 or 2 electrons.
What is an irreversible step in a metabolic pathway?
An irreversible step occurs early in a metabolic pathway to commit a metabolite to the pathway. (DG far from zero).
What types of molecules are used as energy currency by the cell?
Energy may be stored in reduced cofactors: ATP, Acetly-CoA
How is energy currency used?
Energy currency is used in chemical reactions to make the process favorable. (Negative DG).
What is the net yield of glycolysis?
Net yield = 2 ATP + 2 NADH
What is glycolysis?
The breakdown of glucose by enzymes releasing energy & pyruvic acid
What happens in glycolysis under anaerobic conditions?
2 NADH –> heat
What happens in glycolysis under aerobic conditions?
2 NADH –> 5 ATP
What happens in Step 1 of glycolysis? What are the enzymes, reactant, and products?
Step 1: Hexokinase Phosphorylates Glucose
-irreversible
-phosphorylating glucose prevents the sugars from leaving the cell and reduces intracellular [glucose] so that the gradient favors import.
- enzyme: hexokinase
- reactants: Glucose, ATP
- products: G6P, ADP, H+
What happens in Step 2 of glycolysis? What are the enzymes, reactants, and products?
Step 2: Phosphoglucose Isomerase
-reversible
-enzyme: Phosphoglucose Isomerase
-reactants: G6P
-products: F6P
What happens in Step 3 of glycolysis? What are the enzymes, reactants, and products?
Step 3: Phosphofructokinase-1 phosphorylates F6P
-enzyme: Phosphofructokinase-1
-reactants: F6P, ATP
-products: F1,6-Bisphosphate, ADP, H+
Draw Step 4 of glycolysis.
What evidence suggests aldolase uses a Schiff base mechanism in Step 4?
In alanine screening, the gene for a protein is modified to test the importance of a specific residue. Lys is essential to form the Schiff base.
Draw Step 5 of glycolysis.
Draw Step 6 of glycolysis.
What happens in Step 7 of glycolysis? What are the enzymes, reactants, and products?
Step 7:
-enzyme: phosphoglycerate kinase
-reactants: 1,3 BPG, ADP
-products: 3-phosphoglycerate, ATP
Draw Step 8 of glycolysis.
What happens in Step 9 of glycolysis? What are the enzymes, reactants, and products?
Step 9:
-enzyme: Enolase
-reactants: 2-phosphoglycerate
-products: Phosphoenolpyruvate, H2O
Draw Step 10 of glycolysis.
Pyruvate kinase generates ATP.
What happens to pyruvate under anaerobic conditions in animals?
Pyruvate is reduced to lactate so that NADH can be reoxidized to NAD+. NAD+ is then used in the GAPDH reaction to continue glycolysis.
What happens to pyruvate under anaerobic conditions in yeast?
Pyruvate is decarboxylated to acetaldehyde which is then reduced to ethanol so that NADH can be reoxidized to NAD+.
How do we metabolize ethanol?
convert ethanol to acetaldehyde using alcohol dehydrogenase and NAD+ and then convert that to acetate using acetaldehyde dehydrogenase, OH-, and NAD+
What are the other fates of pyruvate outside of glycolysis?
-Pyruvate may be converted to acetyl-CoA which is then oxidized further in the citric acid cycle or used in lipid synthesis.
-Pyruvate may be converted to oxaloacetate which can be used for amino acid or glucose biosynthesis
What is gluconeogenesis? What does it cost?
The synthesis of glucose which occurs primarily in the liver.
4ATP + 2GTP + 2NADH
How is glycolysis regulated?
High concentrations of glycolytic products such as ATP and PEP inhibit further glycolysis, while molecules that indicate low energy in the cell such as AMP and ADP activate glycolysis.
What does F26BP do?
F26BP is an allosteric activator of PFK-1 (glycolysis enzyme) and an inhibitor of the gluconeogenesis enzyme to ensure that the opposing pathways do not run at the same time.
What are the steps for glycogen synthesis?
- Phosphoglucomutase converts G6P to G1P
- G1P is activated by UTP to form UDP-glucose and PPi. The hydrolysis of PPi drives the reaction forward.
- Glycogen synthase links glucose units via a1-4 and UDP functions as a leaving group.
How are the branch points in glycogen created?
Glycogen-branching enzyme moves 7 residues from the main chain to form a new branch.