Exam 3 Flashcards
Transformation
Uptake of free DNA from environment, discovered by Griffith
Fred Griffith
Used nonvirulent and virulent encapsulated Streptococcus pneumoniae cultures on mice to discover transformation
Competent cells
Can naturally take up DNA and be transformed (some are specific in origin)
Gram + competent genera
Bacillus and Streptococcus
Gram - competent genera
Haemophilus, Neisseria and Acinetobacter
Artificial transformation
Makes naturally non-competent cells transform (Ex. Escherichia coli)
Occurs via two techniques: CaCl2 (increases permeability), and electroporation (high-voltage currents form temporary holes in cell wall/plasma membrane)
During transformation, ____ DNA is taken up and converted into ____ DNA, which is incorporated into the genome via a ____
double-stranded, single-stranded, nuclease
Protein that integrates DNA by homologous recombination
RecA
Mobile DNA
Consists of transposable elements that move via transposition
Deinococcus radiodurans
Mesophilic, extremely resistant to radiation and desiccation (drying out) via DNA repair mechanism, commonly found in tetrads
Thermus aquaticus
Thermophile, grows in hot springs, source of Taq polymerase for PCR
Phylum Cyanobacteria
Primary producers in many ecosystems
* Carries out oxygenic photosynthesis (produces O2, water is e- donor, 2 photosystems, generate ATP and NADPH for dark rxns)
* Contains thylakoids with chlorophyll, carboxysomes with C fixation enzymes
Phylum Cyanobacteria, Genus Spirulina
- Alkaliphile (soda lakes)
- High [carotene], food additive, protein, vitamin-rich
Phylum Cyanobacteria, Genus Anabaena
Aquatic bacterium carrying out oxygenic photosynthesis and atmospheric N fixation to ammonia for use by cells (nitrogenase enzyme sensitive to O2
Heterocysts
Differentiated from Anabaena vegetative cells that remain devoid of O2, form every 10th cell
Phylum Chlamydiae
Gram-, obligate intracellular bacteria (pathogenic to animals and humans)
Pathogenic bacteria of phylum Chlamydiae of the genus Chlamydia
- C. pneumoniae
- C. trachomatis (causes #1 reported bacterial STI in U.S.)
Chlamydia reproduction steps
- Attachment of infectious, dormant Elementary Body (EB) via endocytosis
- Inside cell, EB develops into reproductive, non-infectious Reticulate Body (RB) and divides
- RBs differentiate back into EBs, which then are released by host cell lysis
Phylum Spirochaetes
- Flexible, helical shape
- Flagella reside within the periplasm (axial filaments), which rotate and move the whole cell
- Some types are pathogenic (ex. Treponema pallidum - Syphilis, Borrelia burgdorferi - Lyme Disease (from ticks) - identified by Erythema Migrans (bullseye rash))
Phylum Bacteroidetes, Genus Bacteroides
- Obligate anaerobes
- Degrade complex dietary polysaccharides
- Important to intestinal tract of humans, indicator of human health (makes up 30% of bacteria cultured from feces)
Phylum Proteobacteria (Gram -)
Largest group with diverse cell forms and metabolism, broken up into classes:
* Alpha
* Beta
* Gamma
* Delta
* Epsilon
Alpha Proteobacteria
Some are photoheterotrophs, using method of anoxygenic photosynthesis (bacteriochlorophyll) (ex. Rhodospirillum)
Others include:
* Rhizobium - root nodules, fixes N2 for plant symbiont
* Rickettsia - obligate intracellular bacteria in animals (pathogen), causative agent of Rocky Mountain Spotted Fever (ticks)
* Agrobacterium - infect plants
Agrobacterium tumefaciens
- Causes crown gall disease in plants
- Has tumor-inducing (Ti) plasmid
How does A. tumefaciens infect a host plant cell?
A piece of the Ti plasmid T DNA is transferred via conjugation from the bacterium into the plant cell, where it integrates into the plant genome and expresses bacterial Ti genes
T DNA function in plant cells
- Directs plant to overproduce phytohormones, uncontrolled growth forms gall (tumor)
- Stimulates plants to make opines, a C and N source used only by A. tumefaciens
How are genes for T DNA transfer activated in Agrobacterium tumefaciens?
A. tumefaciens senses environmental compounds released by wounded plants via a two-component system (histidine kinase)
(membrane sensor protein VirA, cytoplasmic response regulator protein VirG)
Class Alpha Proteobacteria, Genus Caulobacter (Gram stain & definition)
Gram -, aquatic, and is dimorphic (two distinct morphological cell types)
Caulobacter cell division generates ___
- Motile swarmer cell
- Non-motile stalked cell
Functions of a Caulobacter stalk
- Attachment via holdfast (tip)
- Increased surface area for nutrient uptake (increases in length when limited nutrients)
Caulobacter Life Cycle
- Monotrichous swarmer cell cannot replicate its genome
- Swarmer ejects flagellum, grows a stalk to become a stalked cell that can replicate
- Stalked cell gives rise to motile swarmer and non-motile stalked cell (“hedge-betting” on environmental conditions)
Beta Proteobacteria
- Some are chemolithotrophs (ex. Nitrosomonas, oxidizes ammonia to nitrite in nitrification)
- Some are human pathogens (ex. Neisseria meningitidis, gonorrhoeae, Burkholderia cepacia)
Burkholderia cepacia
Beta Proteobacteria, plant pathogen (onion) and also human respiratory pathogen (causes cystic fibrosis)
Gamma Proteobacteria
Include “Enterics” (intestine)
* Facultative anaerobes (ex. E. coli, Salmonella)
Also includes “Non-enterics”
* Pseudomonas aeruginosa (Cystic Fibrosis, burn wound patients) ,Vibrio cholerae (cholera), Shewanella (mudwatt)
Myxococcus fruiting body assembly
Under nutrient-poor conditions, 1000s of myxococcal cells assemble into a multicellular fruiting body (via signal aggregation), which produces dormant myxospores that rise to the top to spread and germinate
Epsilon Proteobacteria
Smallest group of proteobacteria, some members cause gastrointestinal illness in humans:
* Helicobacter pylori - peptic ulcers
* Campylobacter jejuni - gastroenteritis
Phylum Firmicutes (Low GC Gram+)
Includes pathogens (ex. Staphylococcus (MRSA) and Streptococcus)
Also contains “good” bacteria (ex. Lactobacillus, Lactococcus) which undergo fermentation to form lactic acid for probiotics, cheese, and yogurt
The genera ________ and ________ within the phylum Firmicutes are spore formers
Clostridium and Bacillus
Clostridium members include
- C. tetani - tetanus
- C. botulinum - botulism, produces neurotoxin (Botox)
- C. difficile (“C. diff”) - colitis, inflammation of colon
Bacillus members include
- B. subtilis - non-pathogenic soil bacterium
- B. anthracis - anthrax
- B. thuringiensies - produces insecticidal toxin, used in GMO Bt corn
Sporulation in Bacillus
- Survival mechanism triggered by a lack of nutrients
- Spore forms within the mother cell, which lyses to release the mature spore
- The spore is dormant, heat and stress resistant, but can germinate and become and actively growing cell
How do Bacillus sense stress to initiate sporulation?
Two-component histidine kinase systems
Phylum Actinobacteria (High GC Gram+)
Contains genus Streptomyces and acid-fast genus Mycobacterium
Genus Mycobacterium
Acid-fast cell walls with waxy lipids (requires acid-fast staining to ID), contains human pathogens such as:
* M. tuberculosis - tuberculosis
* M. leprae - leprosy
Genus Streptomyces
- Forms hyphae and mycelia
- Makes chemical Geosmin (smell of moist soil after rain)
- Source of many antibiotics
Eukaryotic microorganisms are grouped into ____ and ____, make up ____ of top 20 most frequent microbial causes of death
Protists, Fungi, 6
Eukaryotic cells features include:
- Sexual/Asexual reproduction
- Meiosis & mitosis
- Membrane-bound nucleus and organelles
- Plasma membranes, cell walls
Endoplasmic Reticulum
Involved in protein synthesis (rough) and transport (smooth)
Golgi Apparatus
Chemical modification, protein packaging and secretion
Mitochondria generate ATP via ____ transport and ____ ____
electron, oxidative phosphorylation
Mitochondria
Powerhouse of the cell, generates ATP and is the site of the TCA cycle
Algae are ____ and protozoa are ____
(metabolism)
photosynthetic, chemoorganotrophic
Protists serve as an important ____ in food chains, and are involved in reef formation, beach sand, and limestone
link
General features of protists include:
- In domain Eukarya
- > 60,000 species
- Mostly unicellular (ex. algae, slime molds, protozoa)
- Terrestrial or aquatic
- Some can be parasitic
- Motile via cilia, flagella, or pseudopodia (cytoskeletal rearrangements)
- Sexual and/or asexual reproduction
Micronucleus
The “true” nucleus, involved in mitosis
Macronucleus
Thousands of short, linear chromosomes, 1-2 genes each (responsible for growth and feeding), transcriptionally active
Solid nutrients enter protists via ____ (engulfment), and soluble nutrients enter via ____ diffusion and ____ transport
phagocytosis, facilitated, active
Encystment
Development into a dormant stage (cyst), plays a role in protection and transmission
Excystment
Escape from cyst to metabolically active, motile form (trophozoite)
Chlamydomonas “Clammy”
- Protist unicellular green algae (chlorophyll)
- Cell walls of cellulose, carries out oxygenic photosynthesis (potential biofuel)
- Motile via two flagella (“beating action”)
- Stigma (eyespot) filled with photoreceptors and allows for phototaxis
Dictyostelium Cellular Slime Mold
- Eats bacteria via phagocytosis
- Free living, aggregate in response to cAMP signal
- Forms motile slug
- Becomes fruiting body with spores (like myxococcus)
Giardia
Protozoan parasites responsible for the human pathogen, Giardiasis (“backpacker’s diarrhea)
* Ingest cysts, trophozoites attach to intestine (using sucking disc), disrupting nutrient and water flow
Naegleria fowleri
“Brain-eating amoeba”
* Thermophile, eutrophic lakes in summer
* Trophozoite form enters nose, travels to brain and destroys tissue
* Causes Primary Amebic Meningoencephalitis (PAM)