Exam #2 Flashcards
In somatic hypermutation, a B cell that has been activated to proliferate what chemically changes DNA bases to another base, resulting in a new codon?
Enzyme: activation induced cytidine deaminase
What helps this occur and where does somatic hypermutation occur?
T cell help, germinal centers
Define affinity maturation and what happens if this isn’t met.
This is when somotic hypermutation provides better binding of the antibody pocket to the antigen. These B cells are selected for. If this doesnt occur and binding ability is decreased, these B cells die via apoptosis.
The enzyme in somatic hypermutation converts cytidine residues to what?
Deaminates cytosines and what in what two regions of an antibody gene?
Uridine, which is recognized as a thymidine.
adenosines, VDJ and VJ
Affinity maturation only occurs if ????
as a response to antigen stimulation. Multiple rounds of mutation/apoptosis can occur.
On the other hand, the affinity maturation can occur via a different process called what??
This occurs in what species?
Gene conversion
Pigs, cattle, rabbits, horses and chickens. (humans and mice are hypermutation exclusive)
Chickens/birds use gene conversion when? But hypermutation when? Where does gene conversion occur in birds? Ruminants?
During B cell differentiation. During an immune response. Bursa. Ileal Peyer’s patches
In species with gene conversion, there is very little diversity within what? Therefore, what happens in gene conversion? Does T cell stimulation cause this?
V, D, and J gene segments. Short sequences within the exon are replaced by V gene segments from pseudogenes. No!! Unlike somatic hypermutation, this does NOT NEED T cell stimulation.
When a mature B cell traffics to peripheral tissues (including 2ndary lymphoid organs), encounter with its antigen and T cell help (cytokines), the B cell converts to a?
Plasma cell
After encountering antigen and converting to plasma cells, B cells will also go through somatic hypermutation, affinity maturation and isotype switching. After these occur, the B cells that survive will differentiate into 1 of 2 things. Name the 2.
Memory B cells and plasma cells
Remember that somatic hypermutation and gene conversion just changes the what inside of antigen binding pockets?
Amino acids
In comparison to somatic hypermutation, isotype switching causes a change to what in the antibody. Does this change it’s antigen specificity?
The heavy chain region. NO
After stimulation by cytokines, isotype switching occurs how? How is switch back prevented? Does specificity change? Are light chains changed?
The somatic DNA is rearranged ONLY IN THE HEAVY CHAIN REGION. No switch back because the DNA loops out and is lost. Specificity is NOT changed. Light chains are NOT changed.
IgM is the first antibody produced during a primary response. Can be bound on surface or secreted as a pentamer. Plasma cells in what 3 tissues secrete IgM. What function is IgM good at?
Spleen, bone marrow, lymph nodes. Activating complement, (neutralization and opsonization less.)
Isotypes switch to which antibodies?
IgG, IgE, IgA
IgG is secreted by plasma cells in which 3 tissues. What 4 functions are IgG very good at? IgG is often transported across what 2 things?
spleen, lymph nodes, bone marrow. Neutralization, opsonization, sensitization for killing by NK cells and activating complement cascade. Transport across placenta and into extravascular sites.
IgE Fc portion binds to receptors on what 2 cells? Main function?
Mast and basophils. Sensitization of mast cells
IgA is secreted by plasma cells where? Main function? Good at transport across 2 things.
Tissues near body surfaces. Neutralization (a little opsonization). Transport across epithelium and into extravascular sites.
Some immune cells express receptors that recognize the Fc region of an antibody. Interaction between them cause activation of that cell. Which antibodies have receptors and what cells do those antibodies activate?
IgG=phagocytes like macrophages, neutrophils, eosinophils, Nk cells, mast cells. IgE=mast cells and eosinophils IgA (a little)
After the first encounter with an antigen, there is a gradual rise in antibody after a lag phase of how many days? THe second encounter is much stronger due to blank blank. Isotype switches from what to what?
3-7 days. Immunological memory. IgM to IgG.
Does memory involved B or T cells specific for an antigen?
BOTH
Where are memory cells stored? B cells have much larger response in 2nd responses.
Secondary lymphoid tissues. B cells primarily in bone marrow.
Is somatic hypermutation higher at the first or 2nd response?
2nd!!
What are the 3 P’s of MHC and define each.
Polygenic-several genes exist for a given MHC class. Polymorphic-a large umber of alleles exist for a given gene. Promiscuous-will bind a range of similar epitopes.