Exam 1 practice Flashcards
Cell Components: Membrane Organelles
nucleus (double membrane), mitochondria (double membrane), RER, SER, Golgi, lysosome, peroxisome.;
Cell Components: non-membrane organelles
non-membrane organelles: ribosomes, microfilaments, microtubule, centriole;
Cell Components: Inclusions
melanin, glycogen, lipid, secretory granules
What are the properties of Plasma Membrane
Semi-permeable, consists of three laminae, each lamina is 2-3 nm thick, made of lipids and proteins: 98% lipids (75% phospholipids, 20% cholesterol, 5% glycolipids) and 2% proteins. But make up 50% of the weight
Phospholipid molecules
Phospholipid molecules are arranged in a bilayer, with hydrophilic heads facing outside and hydrophobic ends facing toward the center of the membrane. Cholesterol molecules are located amid the tails of phospholipid molecules
Proteins
Proteins, although 2% of the membrane molecules, constitute 50% of the membrane weight. These include: transmembrane proteins and peripheral proteins.
Transmembrane proteins
Transmembrane proteins have hydrophilic regions facing the cytoplasm and extracellular fluid and hydrophobic regions passing back and forth through the lipid of the membrane; mostly, they are glycoproteins.
Peripheral Proteins
do not protrude through the phospholipids but adhere to one face of the membrane.
Note chains of sugars or glycolipids attached to peripheral proteins (form glycocalyx).
Functions of membrane proteins: Receptors
usually specific for one ligand;
Functions of membrane proteins:Second -messenger system
second-messenger system: e.g., cAMP that activates kinases which, in turn, activate physiological changes within a cell;
Functions of membrane proteins: enzymes
enzymes that carry out starch and protein digestion, e.g., in the intestine;
Functions of membrane proteins: channel proteins
channel proteins that are transmembrane proteins with pores, which allow passage of water and hydrophilic solutes through the membrane; some channels are always open, while others are gated and open or close in response to three types of stimuli: ligand-regulated gates, voltage-regulated gates, and mechanically-regulated gates;
Functions of membrane proteins: carrier proteins
carrier proteins that are transmembrane proteins and help transferring glucose, electrolytes and other solutes across the membrane;
Functions of membrane proteins: Cell Identity markers
cell identity markers that are glycocalyx and help the body in distinguishing between its own cells and foreign invaders;
Functions of membrane proteins: cell adhesion molecules
cell adhesion molecules that help bind cells to one another and to extracellular material
What cell organelles/inclusions can be identified with light microscope
Nucleus
describe cell organelles and processes associated with absorption phagocytosis
is absorption of large particles by means of pseudopods and occurs only in specialized cells, e.g., macrophages and neutrophils.
describe cell organelles and processes associated with absorption pinocytosis
or cell drinking is the process of taking in droplets of ECF containing molecules of some use to all body cells, e.g., pinocytic vesicles in the epithelial cells of the intestine, kidney, gallbladder.
Receptor-mediated endocytosis
Is phagocytosis or pinocytosis in which specific solutes bind to receptors on the plasma membrane and then are taken into the cell in clathrin-coated vesicles with a minimal amount of fluid, e.g., low-density lipoproteins (LDL, protein-coated droplets of cholesterol in the blood), insulin transport from the blood to the ECF (this process called transcytosis)
Endocytosis
brings matter into a cell and exocytosis is the reverse
Discuss transporting mechanisms across the cell membrane:
Vesicular transport
Unlike carrier-mediated transports, move large particles, droplets of fluid, or numerous molecules at cone, contained in vesicles or vacuoles
Describe cell organelles and processes associated with steroid synthesis
Mitochondria contains enzymes associated with sterod synthesis
Describe cell organelles and processes associated with ATP synthesis
Mitochondria
Describe cell organelles and processes associated with cell cycle
Divided into four phases: G1, S, G2, and M. G1 is the pre-duplication phase during which cell performs its specific functions; S is the synthesis phase in which centrioles and DNA duplicate; G2 is the post-duplication phase during which cell finishes replicating its centrioles and synthesis of enzymes that control cell division; M is the mitotic phase, in which a cell forms two new daughter cells. Phases G1, S and G2 are collectively called interphase.
Nuclear degenerative changes are classified as
pyknosis (clumping of chromatin)
karyorrhexis (breaking down of chromatin)
karyolysis (dissolution of chromatin).
Describe cell organelles and processes associated with cell death: Apoptosis
Defined as the process of programmed cell death that occurs continuously in all organs throughout life.
Nuclear Fragmentation
Cytoplasmic blebbing
Discuss transporting mechanisms across the cell membrane.:
Diffusion
Movement of particles from higher concentration to lower concentration, e.g., transport of oxygen into the bloodstream, diffusion of solutes across the artificial dialysis membrane (note, diffusion does not require cell membrane).
The diffusion rate is directly affected by temperature, molecular weight, concentration gradient, and surface area, and inversely by molecular weight.
Diffusion through a cell membrane depends on how permeable it is to the particles. For example, potassium ions diffuse more rapidly than sodium; nonpolar, hydrophobic, lipid soluble substances such as oxygen, nitric oxide, alcohol, and steroids diffuse easily through the phospholipid molecules of the membrane; conversely, water and small charged hydrophilic solutes such as electrolytes do not mix with lipids but diffuse through channel proteins.
Discuss transporting mechanisms across the cell membrane.:
Filtration
driven by hydrostatic pressure, e.g., transport of water, salts, nutrients, and other solutes from capillaries to the tissue fluid and vice versa, and filtration of wastes from the blood in the kidneys.
Discuss transporting mechanisms across the cell membrane.
Osmosis
diffusion of water down its concentration gradient and it occurs through non-living membranes such as dialysis membranes, as well as through the plasma membrane. Significant amount of water even moves through hydrophobic regions of the membrane, but it occurs more rapidly through channel proteins called aquaporins.
Discuss transporting mechanisms across the cell membrane:
Facilitated Diffusion
Facilitated diffusion is the carrier-mediated transport through a membrane down its concentration gradient, but it does not consume ATP, e.g., transport of glucose with a carrier protein.
Discuss transporting mechanisms across the cell membrane.
Active Transport
Is a carrier-mediated transport of a solute through a membrane up its concentration gradient (from a lower to a higher concentration) and requires ATP; e.g., calcium pumps (transport calcium out of the cell in the extracellular fluid [ECF], which already has more calcium than within the cell), absorption of amino acids from the ECF to the cytoplasm; sodium-potassium pump, also called sodium-potassium ATPase, transfers sodium in the ECF and potassium in the cytoplasm (keeps potassium concentration higher and sodium concentration lower within the cell, this difference in sodium and potassium concentration maintains the resting membrane potential).
Cell membrane Transport
Membrane is selectively permeable, allowing some things to pass through (generally lipid soluble and small molecules), but prevents proteins and phosphates from entering or leaving the cell.
Two overlapping methods of moving substances across the membrane: passive, requires no energy (ATP), e.g., filtration and diffusion; active, requires ATP, e.g., carrier-mediated, and vesicular transports.
Cytoplasmic Inclusions
Are metabolic byproducts and are of two kinds: endogenous and exogenous. Endogenous inclusions include pigments (melanin, lipofuscin), glycogen, lipid, and secretory granules. Exogenous inclusions include dust, bacteria, and viruses. While secretory granules are surrounded by cell membrane; melanin granules, glycogen granules, and lipid droplets are not.
Mitochondria
Double membrane, cristae, matrix contains circular DNA (maternal origin), ribosomes, and calcium ions. Function: Powerhouse (ATP synthesis, Krebs Cycle), also contain enzymes associated with steroid synthesis; synthesize 13 mitochondrial proteins. Mitochondria are thought to be derived from bacteria because of similarities in DNA and ribosomes. Also, both can self-duplicate.
Endoplasmic reticulum: SER
Smooth ER lacks ribosomes; both are continuous with each other and with the nuclear membrane.
SER synthesizes steroids (testosterone, Leydig cells), detoxifies alcohol and drugs (liver), stores and releases calcium (skeletal and cardiac muscle).
Endoplasmic reticulum
Network of interconnected channels called cisternae enclosed by a membrane
Endoplasmic reticulum: RER
Rough ER cisternae are covered with ribosomes;
RER synthesizes proteins that are destined for other organelles such as lysosomes or secreted extracellularly such as enzymes, antibodies, and hormones.
Ribosomes
Composed of ribosomal proteins and ribonucleic acids; three types of RNA:
Transfer RNA (tRNA) carries amino acids to ribosomes;
mRNA carries a code for amino acid sequence; and
rRNA (ribosomal RNA) produces ribosomes with the ribosomal proteins that are organelles responsible for mRNA translation.
Golgi complex
Consists of a stack of flat cisternae with an inner face (cis, forming) and outer face (trans, maturing); cisternae of cis phase receive newly synthesized proteins from RER in the form of vesicles; after Golgi processing, these molecules are released from the trans face in larger vesicles to constitute secretory vesicles, lysosomes, or other cytoplasmic components.
While lysosomes remain within the cell, secretory vesicles leave the cell by fusing with the cell membrane.
The Golgi complex in most epithelial cells, especially simple epithelium, is supra-nuclear, and it can be stained in paraffin sections with silver stain.
The cisternae of Golgi forming a stack. It has two faces: CIS (forming) and TRANS (maturing).
Lysosome
Lysosomal enzymes are synthesized in RER and packaged in the Golgi complex.
are divided into three types:
Primary lysosomes are homogenous (virgin, newly synthesized),
secondary lysosomes are heterogeneous (Heterophagosomes), and
tertiary lysosomes contain undigested material and are also called lipofuscin pigment or residual body. The latter are more numerous in neurons and cardiac cells because these cells are not replaced.
Lysosomal enzymes are acidic in pH and thus they can be stained in paraffin sections for acid phosphatase.
All cells use lysosomes to digest old organelles, the process is called autophagy; neutrophils and macrophages use lysosomes to digest and dispose of foreign materials such as bacteria; liver cells use them to break down glycogen; the uterus after pregnancy uses them to shrink its size, the process is called autolysis.
Lysosomal enzymatic failure leads to diseases because of accumulation of undigested material in different cell types.
Peroxisome
Spherical bodies, 0.5 to 1.2 m in diameter; like mitochondria, they utilize oxygen, but this is used to oxidize organic molecules, which produces H2O2, which is broken to water and oxygen by catalase enzyme. They are present in all cells but are abundant in liver and kidney cells, where they neutralize free radicals and detoxify alcohol, drugs, and blood-borne toxins.
Cytoskeleton
includes: microfilaments (actin and intermediate filaments) and microtubules.
Actin
6 nm thick, form a part of the cytoplasmic skeleton in all cells; however, in muscle cells, they form integration with myosin filaments. In other cells, they are associated with membrane activities such as pinocytosis, endocytosis, exocytosis, and cell’s migratory activities.
Intermediate filaments
10 nm thick, resist stress placed on a cell, form a part of the junctions between cells, especially developed in epidermal cells where they are also called tonofilaments. (Fig. 1-14). Types of intermediate filaments, depending upon protein composition, differ among tissue types: keratin (epithelium), vimentin (mesenchymal cells), desmin (muscle), glial fibrillary acidic protein (glial cells), and neurofilaments (neurons).
Microtubules
Microtubules are cylindrical structures, 25nm in diameter, lumen is surrounded by 13 protofilaments of globular proteins called tubulin. Microtubules provide support to the cell and participate in moving organelles and other cytoplasmic contents within the cell. Microtubules are parts of the centriole, basal body, cilium, and flagellum. They can be easily assembled and disassembled, depending upon the cell’s requirements. The anti-mitotic alkaloids arrest microtubule formation and are used in preparing karyotypes (colchicine) and cancer chemotherapy (Taxol, vinblastine).
Centrioles
Short cylindrical bodies consisting of nine groups of peripherally arranged three microtubules each; two centrioles lie at right angle to each other within the cytoplasm, usually above the nucleus, called centrosome. Centrioles play a role in cell division, are the source of basal bodies, which migrate to the plasma membrane and give rise to cilia or flagella (the process is called ciliogenesis).
Nucleus
Largest organelle and usually the only one visible with the light microscope, spherical to elliptical in shape and about 5 um in diameter,
without nucleus in the case of mammalian RBC,
multinucleate in the case of skeletal muscle, osteoclast (bone eating cell), giant cell;
surrounded by two unit membranes, which are perforated by 30-100 nm nuclear pores, which are sites of transport between the nucleus and the cytoplasm (e.g., raw materials for RNA and DNA synthesis, certain enzymes and hormones that activate DNA enter the nucleus; RNA and ribosomes leave the nucleus); the nuclear material is called nucleoplasm, which includes chromatin (fine thread-like material composed of DNA and protein) and one or more dark-staining bodies called nucleoli where ribosomes are produced.
Chromatin is classified into two types: heterochromatin appears as basophilic clumps at the LM or coarse granules in the EM; euchromatin is visible as lightly basophilic areas in the LM or finely dispersed particles in the EM.
Sex chromatin is one of the two X chromosomes in the female nucleus. Nucleoli are composed of nucleolar organizer DNA, pars fibrosa, and pars granulosa.
Note, the nucleolus synthesizes ribosomes, but not proteins.
Body cells, based upon the length of cycles can be divided into following types
1) Static Cells: never divide, stem cells not present (e.g. Neurons and Cardiac cells, come out of the cycle, G0 phase for life).
2) Stable Cells: normally don’t divide but can divide in response to disease and/or injury (e.g., liver cells, remain in G0 phase until injured).
3) Renewing Cells: are continuously replaced at a fixed interval. Examples: Blood cells are replaced after 120 days, leukocytes are replaced every 2-3 days, gastrointestinal epithelial cells are replaced every 2-3 days, skin cells are replaced every 2-3 weeks.
Note: Only stem cells can divide. Differentiated cells do not divide.
What stains Carbohydrates
Periodic acid Schiff (PAS)
What stains glycogen
PAS (Best carmine, glycogen only)
What stains lipids
Oil red/Sudan black (frozen section); Osmium (paraffin section)
What stains Mitochondria
Succinate dehydrogenase enzyme
What stains lysosome
Acid phosphatase enzyme
What stains golgi body
Silver nitrate
What stains peroxisomes
Catalase enzyme
What stains elastic fibers
Wiegert’s elastic stain
What stains Reticular fibers
Silver nitrate
Steps involved in the synthesis of protein granules and lysosomes. ( protein synthesis)
1: Synthesis of mRNA, rRNA and tRNA in the nucleus.
2: Polyribosomes docking with RER.
- Fusion of protein-containing vesicles with cis phase of Golgi.
- Processing of molecules within Golgi cisternae, including glycosylation.
- Release of packaged and condensed vesicles from trans phase of Golgi
- Fusion of condensed vesicles with cell membrane for exocytosis.
Note: Lysosomes are sorted out and remain within the cell.
Autophagosomes ( another secondary lysosome)
are lysosomes fused with cell’s own old organelles (mitochondria, SER, RER, etc.).
Lipofuscin/ residual bodies
Are un-digestible products of lysosomal digestion. These are excreted outside the cell or stored within cells, e.g., neurons or cardiac cell.
How is melanin synthesized and transferred
Melanocytes synthesize melanin, which is then transferred to keratinocytes (skin cells).
Note melanocytes are present in the basal layer of the epidermis.
Liver Hepatocytes
Have an aggregation of glycogen granules near the central vein
Significance of lipid droplet outer layer
They are not surrounded by a membrane
Brush border
A group of microvilli collectively
What is the juntional complex (JC)
(called terminal bar at LM) is membrane-associated structures that function in cell-to-cell attachment of simple epithelia.
zonula occludens (ZO),
zonula adherens (ZA) and
macula adherens (MA, also called desmosome).
Both ZO and ZA form a belt around the cell apex, whereas MA makes spot-like plaques.
ZA and MA have 10-20 nm intercellular spaces.
Zonula occludens
No intercellular space because outer laminae of adjacent membranes are fused.
ZO surrounds the entire apical circumference of adjacent cells and is formed by fusion of the outer leaflets of the plasma membrane.
Function: prevents movement of substances into the intercellular space from the lumen or vice versa.
Zonula adherens
ZA surrounds the entire circumference of adjacent cells, is located next to the ZO, and is characterized by 10-20 nm intercellular space occupied by filamentous material.
A variation of ZA is fascia adherens (FA), which is a ribbon like fusion between adjacent endothelial cells (does not cover the entire circumference). FO is also present between adjacent cardiac muscle cells.
Function: binding of adjacent cells
Desmosomes (macula adherens)
Are seen as dense bodies between adjacent skin cells (arrows).
is a small, discrete, disk-shaped adhesive site. It is characterized by dense plaque of intermediate keratin filaments (tonofilaments) loops in the cytoplasm. Function: Provides firm binding between cells; desmosomes are well developed in stratified epithelia, especially in the skin).
A variation of desmosome is hemidesmosome (half desmosome), which binds the epithelium with the underlying connective tissue.
Gap Junctions
are spot-spot like structures with 1-2 nm gap.
They can be found along with JC, or independently, such as, in smooth and cardiac muscles.
is not a part of the junctional complex, but is present in all tissues, except skeletal muscle.
Gap junctions couple adjacent cells metabolically and electrically (sites of low electrical resistance), is composed of six proteins called connexins, which leave a gap of 2 nm between opposing plasma membrane.
Gap junctions permit between cells the exchange of signaling molecules such as ions, hormones, AMP and GMP, so that cells can act as a coordinated manner rather than as independent units (important in nervous system, smooth muscle and cardiac muscle).
Cell Cycle
Divided into four phases: G1, S, G2, and M.
G1 is the pre-duplication phase during which cell performs its specific functions;
S is the synthesis phase in which centrioles and DNA duplicate;
G2 is the post-duplication phase during which cell finishes replicating its centrioles and synthesis of enzymes that control cell division;
M is the mitotic phase, in which a cell forms two new daughter cells.
Phases G1, S, and G2 are collectively called interphase.
Epithelial tissue
General information: covers the body surface or lines the body cavities; epithelial cells are closely placed with little intercellular space; cells lie on a layer of connective tissue, with the bottom layer of cells lying on a basal lamina; avascular, but cells derive nutrients via diffusion from blood vessels in the underlying connective tissue; cells perform various functions, depending upon the location: absorption (intestine), secretion (glands), protection (skin), sensory (neuroepithelium), and contractility (myoepithelial).
Classification of epithelia
Simple:
Cuboidal, columnar, squamous
Stratified:
Cuboidal, columnar, squamous
Pseudostratified
Transitional
Simple epithelium
all cells lie on the basal lamina; stratified: more than one layer, cells of the bottom layer lie on the basal lamina
Pseudostratified epithelium
all cells lie on the basal lamina but appear stratified because their nuclei lie at different location
Pseudostratified epithelium is usually columnar and ciliated with goblet cells.
Transitional epithelium
Transitional between squamous and cuboidal, depending upon the stress on epithelial cells
Note dome-shaped (outward bulging) appearance of cells in the outermost layer (stars).
Transitional epithelium changes from many layers in empty bladder to a few layers in full bladder (appears as stratified squamous).
Example: in the urinary tract
What is the most prevalent epithelium and its function
The most prevalent epithelium is stratified squamous, which can be keratinized or non-keratinized.
Keratinized: skin
non-keratinized: esophagus
Changes in epithelium (Physiological Process)
A continuous abrasion or irritation can change the epithelium from one type to the other, usually stratified squamous non-keratinized to keratinized, as is the case in the esophagus when milk diet is replaced by roughage in young animals
Changes in epithelium (Pathological): Metaplasia
pseudostratified columnar ciliated to stratified squamous in the respiratory tract because of continuous smoke inhalation
Basement Membrane
separates the epithelial tissue from the connective tissue; too thin to be seen at the light microscope; basal lamina and the adjoining connective tissue components, including collagen, glycoproteins (laminin and fibronectin), and a large proteo-glycan complex called heparin sulphate, form a layer called the basement membrane, which is PAS-positive and can be seen with a light microscope.
Renewal of epithelia
Epithelial cells are continuously replaced, but the rate of replacement is variable. For example, replaced every week in the intestine, every 3-4 weeks in the skin, and very slow in the liver and pancreas.
Cell surface specializations
The apical cell surface modifications include: microvilli, stereocilia, cilia, and flagella.
Microvilli
are 1um high, 80 nm wide, extensions of the plasma membrane, increase the surface area of absorptive cells such as intestine and kidney by 15-40 times. An individual microvillus is difficult to see with the light microscope (LM), but they are grouped together and form a brush border (also called striated border) that is visible at the LM.
Stereocillia
are long (10-20 um) and irregular microvilli, present in the epididymis, where their function is to absorb testicular fluid.
Cillia
are hair like processes, 7-10 um high and 0.2 um diameter. Each cilium consists of 2 central microtubules and 9 peripheral microtubule pairs, which are surrounded by a cell membrane. Each peripheral microtubule pair has two little dynein arms, a motor protein that uses energy from ATP to hook up to the next pair of microtubules.