Exam 1 Flashcards
Vorinostat
- A histone deacetylase (HDAC) inhibitor
- In cancer, HDAC’s can be turned ON, and genome is turned OFF
- This can turn ON the genome, in particular tumor suppressor genes
Werner Syndrome
- Progeria syndrome (pre-mature aging)
- WRN mutation
- Helicase assoc. with telomere maintenance
Antimetabolites
- Type of anti-neoplastic agent
- Incorporated into growing DNA instead of dNTP’s
Topoisomerase inhibitors
- Type of anti-neoplastic agent
RNA Polymerases
mRNA - II miRNA - II tRNA - III rRNA (5.8S, 18S, 28S) - I rRNA (5S) - III snRNA and scRNA - II and III
Proteosomes
- 20S core (protein breakdown)
- 19S caps (targets poly-ubiquitin tags)
Ubiquitin Ligase
- find degredation signal on target protein
- Adds ubiquitin tag
Actin
- Most abundant cytoskeletal protein
- G actin = globular
- F actin = filament
- Polym. occurs at + end, depolym. at - end
Cell shape/movement
Actin forms cell processes - Microvilli - Filopodia - Pseudopodia Locomotion - Lamellipodia (+ end leads)
Spectrin
- Actin binding protein
- Assoc. with membrane lipids/proteins
- Anchors actin to membrane
Microtubules
- ALPHA and BETA (form tube)
- GAMMA (forms foundation)
- Polym. at + end, requires GTP
- Depolym. at - end
Microtubule Organizing Centers (MTOC)
- places in cells where microtubules start to form
Microtubule Basal Bodies
- part of MTOC
- found at base of cilium/flagellum
- allow for whip-like, unidirectional motion
Motorproteins
- walk along microtubules
- kinesins: walk to +, away from nuc, can push OR pull
- dyneins: walk to-, towards nuc, can ONLY pull
Intermediate filaments types
mechanical strength
assoc. with membranes and cytoskel.
types
- keratins (synth. by epithelium)
- neurofilaments (support long, thin axons)
- lamins (undelying all nuc membranes)
Intermediate filament assembly
- homodimers (two together)
- protofilaments (two of those)
- filaments (eight of those)
Desmosomes
- cell-cell junctions
Hemidesmosomes
- cell-ECM junctions (at basement membrane)
Basement membrane
- Basal Lamina + Reticular Layer
- a fibrous EC layer
Glucosaminoglycans (GAG)
- sugars with sulfate groups
- (-) charged, trap + ions and water
- part of proteoglycan (protein + GAG)
Propyl hydroxylase
- resident ER protein
- forms hydroxy-Proline from Proline
- needed for collagen
- REQUIRES Vitamin C (Scurvy)
Collagen
- 31 kinds
- Sequence is Gly-Pro-hydroxyPro
- makes triple helixes (tropocollagen)
- important in wound healing
Elastin
can stretch and recoil
made of
- elastin (randomly coiled and hydrophobic, covalently cross-linked to each other)
- fibrillin (a surrounding network of microfibrils)
Lysyl oxidase
- enzyme that does the cross-linking of elastin molecules to create elastin fibrils from tropoelastin
Fibronectin
principle adhesion protein in conn. tissue contains multiple adhesion domains - collagen - GAG (part of ground substance) - integrin (cell surface protein)
Laminin
- principle adhesion protein of basal lamina
Integrins
- cell surface receptors
- bind to ECM (collagen, fibronectin, laminin)
- anchor to cytoskel.
Focal adhesions
- attach motile cells to ECM
- anchor to actin skel.
Scurvy
defective collagen formation
- impaired wound healing
- capillary hemorrhage
- vit C deficiency (ascorbic acid)
Kinetochore microtubules
- attach to sister chromatids
- depolymerize
Astral microtubules
- attach to membrane
- polymerize
Cell cycle: Restriction point
- late G1
- controls cell cycle and entry into DNA duplication
- Is environment favorable?
Cell cycle: G2/M checkpoint
- during G2
- is all DNA copied?
- Is environment favorable?
Cell cycle: Metaphase-to-anaphase checkpoint
- During M
- Are all chromosomes attached to spindle?
Cell cycle: DNA damage checkpoints
Found in
- G1
- S
- G2
Cyclin dependent kinases
Phosphorylate proteins that regulate cell cycle
G1/S cyclin
- trigger progression through restriction point
- peaks in G1
S cyclin
- trigger chr duplication
- Peaks through S and G2
M cyclin
- trigger process through G2/M checkpoint
- Peaks in M
Regulation of Cyclin-Cdk complex
- Cdk-activating kinase
- Wee1
- Cdc25
- Cdk Inhibitor proteins (CKI)
Cdk-activating kinase (activates complex by P active site)
Wee1 (inhibits complex by P inhibition site)
Cdc25 (actiates complex by de-P inhibition site)
Cdk Inhibitor proteins (CKI)
- creates Cyclin-Cdk-CKI complex
- inhibits Cyclin-Cdk activity
- ex: p27, p21, p16
Securin
- hold sister chromatids together
APC/C
- anaphase promoting complex/cyclosome
- actived by Cdc20
- ubiquitin ligases target securin (hold sister chr together) for degradatin ——-> anaphase
Origin replication complexes
- complexes found at origins of replication
- remain assoc. with origins throughout cell cycle
- include DNA helicases
- these are Phosphorylated to initiate replication
Cohesins
- ring-like structures around sister chr to keep them together
- cleaved by separase
M phase control
M-Cdk Phosph. targets
- Condensin (promotes chr condensation) - Mitotic spindle - Nuclear pore complexes - Nuclear lamina - APC/C
[Glucose] in cell
- 5mM
- 90 mg/dL
Phosphofructokinase
- 3rd step of Glyc.
- F6P ——> F-1,6-BP
- Activated: AMP, F-2,6-BP
- Inhibited: ATP, citrate
Hexokinase (I and IV)
Commitment step of Glyc. Glu -----> G6P Inhibited by G6P (product) Hexokinase I - high affinity, low Km - NOT super specific for Glu - Inhibited by its product Hexokinase IV - "Glucokinase" - In liver and pancrease - NOT inhibited by G6P - Larger Km, though - highly specific for Glu - Acts as a sensor for B-cells in pancrease (high Glu --> more HK IV activity --> insulin secreted)
Pyruvate Kinase
- 10th step of Glyc.
- PEP —–> Pyruvate
- Activated: AMP, F-1,6-BP
- Inhibited: ATP, Acetyl-CoA
Arsenic
Found in
- Rat poison
- Herbicides
- Industrial cleaners
Inhibits Pyruvate Dehydrogenase (Pyruvate —> A-CoA)
“Garlic smell” = PDH deficiency = lactic acidosis
Carboxylases
Require ABC - ATP - Biotin - CO2 Pyruvate carboxylase (gluconeogen.) Acetyl-CoA carboxylase (FA synth.) Propionyl-CoA carboxylase (Prop. acid pathway)
TLCFN
TLCFN - TPP (thiamin, Vit B1) - alpha-Lipoiic Acid - CoA - FAD (riboflavin, Vit B2) - NAD+ (nicain, Vit B3) 3 enzymes require - Pyruvate DH (pyruv ---> A-CoA) - a-ketoglutarate DH (a-KG ---> succinyl CoA) - branched chain ketoacid DH (Val/Iso/Leu ---> Propionyl CoA) "maple syrup urine disease"
Hutchinson-Gilford Progeria Syndrome
normal dev. 3-6 months LMNA mutation - Lamin A, of nuc. lamina fragile nuclei, genomic instability mean death 13.5 years
Beriberi
Thiamine deficiency (Vit B1) Need TPP for TLCFN enzymes - Pyruvate DH - a-Ketoglutarate DH Loss of neural function
Fluoroacetate
- Inhibits aconitase of TCA cycle
- metabolizes to fluorocitrate
- in some acacia trees in Australia/Africa
Tyrosine-Kinase Associated Receptors
act through CYTOplasmic tyr. kinases soluble tyr. kinases in cytosol associate with activvated receptor ligands - cytokines - interleukins - integrins