Exam 1 Flashcards
Monophyletic group
A clade, all organisms in a lineage plus the ancestor they have in common, therefore a natural group
can be separated from root with single cut and includes ancestral taxon and all of its descendants
paraphyletic group
an incomplete clade resulting from removal of one or more component lineages. clade originating from a single common ancestor but does not contain all descendants from this ancestor
polyphyletic group
an artificial group characterized by features that are not homologous. organisms that are grouped together despite not being closely related, often include organisms that have similar traits or appearances but do not share an evolutionary history
Taphonomy
the study of how organisms decay and become fossils
absolute (radiometric) dating
Where radioactive isotopes decay at a constant rate (half life) comparison of relative amounts of parent and daughter isotopes in igneous rocks ex) argon accumulates from decay of potassium
Relative (stratigraphic dating)
uses stratigraphy and law of superposition, stratigraphy is the branch of geology that studies the succession of rock layers (strata) as well as the origin, composition, and distribution of these geological strata
index fossil
hard bodied fossils that we know are constrained to a particular time horizon
taxonomy
principles and practice of naming organisms and groups of organisms
classification
principles and practice of ordering diversity for information storage and retrieval
Law of Superposition
in undeformed strata, the oldest rocks will be at the bottom and the youngest at the top, used to reconstruct chronology of events one location at a time
principle of fossil correlation
biostratigraphy, similar assemblages of fossils assumed to be the same age, therefore, the rock layers in which they are deposited must also be the same age. Uses index fossils
How does Linnaean classification work?
Animal taxonomy, binomial system of biological nomenclature, hierarchy is nested, based on similarities in obvious physical traits, puts groups in taxa (a group of organisms that are classified as a unit, subjective, relies on physical traits, ranks are not meaningful
How do we write Linnean classification
Homo sapiens (itallicized)
Homo->genus
sapiens-> species
order of geologic periods
cambrian->ordovician->silurian->devonian-> carboniferous-> permian-> MESOZOIC ERA (triassic, jurassic, crestaceous)-> CENOZOIC ERA
cambrian period
warm, lots of water, oxygen=large multicellular life, cambrian explosion
ordovician period
very high sea level, cold at end, mass extinction at end, vertebrates with bony skeletons
silurian period
first terrestrial ecosystems (swamps with plants, arthropods) lots of mountain building, fish, reefs
Devonian period
shallow tropical habitat, continents start to converge, ends with mass extinction (40%), many fish groups diversify (tetrapods), trees originate and begin to diversify
Carboniferous period
lots of trees (creates massive coal deposits) swampy and lots of early tetrapods diversify
permian period
large early tetrapods, amphibious, split between amphibians and amniotes (amniotes further diverge into reptiles and synapsids)
Mesozoic Era
Triassic, Jurassic, Cretaceous periods
pangea breaks up, high sea level by cretaceous and very warm, mass extinction at end of cretaceous, new groups cynodonts (early mammal relatives), mammals, lepidosaurs, archosaurs
Cenozoic Era
Eocene epoch to present
diversification of modern groups, tetonic movement created land bridges, ocean circulation patterns, in Pleistocene period there were megafuna (which then went extinct)
Geologic periods anagram
Can Oprah Sell Dented Cars Please Mom Check
cambrian, ordovician, silurian, devonian, carboniferous, permian, mesozic, cenozoic
How does radiometric dating work
radioactive isotopes decay at a constant rate (half life) comparison of relative amounts of parent and daughter isotopes in igneous rocks (formed by crystallization at higher temps) comparison to known have live to establish absolute ages of rock formation
ex)argon is a chemically unreactive gas, rocks form without argon content, argon contant accumulates overtime with the decay of potassium, measure ratio K:Ar and use half life to date
How do we use synapomorphies and plesiomorphies to refer to characters on a cladogram
Synapomorphies: a shared derived characteristic that unites two or more taxa into a monophyletic group, phylogenies are inferred using synapomorphies
Plesiomorphies: an apomorphy of a more inclusive hierarchal level than those being considered. an ancestral or primitive characteristic
* a synapomorphy is a recent shared trait, a pleisiomorphy is more ancestral trait
Crown group
a clade that contains all living members of a group adn any fossils within it
stem group
extinct taxa that are more closely related to the crown group than any other group, but fall outside of it
Total Group
the group including both stem and crown group
what are some characteristics that make an animal more likely to fossilize?
species with hard parts and living near water are most likely to fossilize (bones and teeth, aquatic organisms) soft tissues only preserved under exceptional circumstances such as rapid burial, fine grained sediments, and anoxic conditions
What processes of taphonomy is fossilization working against
Taphonomy is the study of how decay and tissue disintegration affect fossilization. fossilization has to happen because of rapid burial, freezing, embedding in amber, and desiccation (all of these protect from decay, weathering, scavenging).
Discuss the difference between homology and analogy, give an example of each
homology: two or more features that share a common ancestor
analogy: features with similar functions but no common ancestor, evidence of convergent evolution (distantly related organisms independently evolve similar traits to adapt to similar necessities)
An example of an
What are the different parts of a cladogram? What relationship tells you how closely two taxa related to one another?
root (start of tree) nodes(where two branches split off) tips (top of tree) branches (each split group) just look at picture phylogenetic trees are built using characters (genes, development, behavior) and can show us how closely related two taxa are. The most closely related taxa are known as sister taxa
Describe the major innovations that characterize vertebrates. What were the anatomical changes and why were they beneficial?
A cranium is present- skeletal container and support for brain and sensory capsules this houses and protects the brain and neural crest cells migrate from CNS and give craniofacial skeleton, brain with tripartite organization (forms distinct brain which includes forebrain, midbrain, and hindbrain), vertebral elements surrounded the notochord (separated by intervertebral disks, neural and hemal arches, centrum replaces notochord)
What are neural crest cells and why are these cells so important to vertebrates?
Neural crest cells migrate down the head and trunk in streams from the central nervous system,
and give rise to most of the craniofacial skeleton in
vertebrates, also pigment cells, parts of nervous system. These cells are so important because they readily proliferate and migrate to give rise to a diverse variety of craniofacial structures
What are major character transformations that occured during the transition from fishes to tetrapods? How were they useful for adapting to a terrestrial lifestyle
skull changes (pectoral girdle disconnects from skull to form neck which gives more movement, rounded head becomes flatter head which allows for better sight out of water, loss of opercular and temporal skull bones) pelvic girdle forms (specialzed sacral vertebrae to connect hind limbs) and fins become limbs with digits (7-8) instead of fin rays. Also, lungs become more developed to breathe air and scales are reduced or absent
Embryonic germ layers
ectoderm (outer), endoderm (inner), mesoderm (middle)
Ectoderm
gives rise to cells that become the CNS, PNS, sensory organs, epidermis, hair, and nails
Endoderm
gives rise to mucous membrane lining digestive and respiratory tracts, digestive glands, other things
mesoderm
becomes gelatinous tissue called mesenchyme, gives rise to cartilage, bone, blood, muscles, connective tissue, heart, blood vessel, and kidney
what are the differences between protostomes and deuterostomes
Protostomes: spiral cleavage, blastopore forms mouth, mesoderm splits to form coelom
Deuterostomes: Radial cleavage, blastopore forms anus, coelom forms from gut outpocket
What are the major chordate synapomorphies and which are present in each group of protochordates we talked about
the 5 chordate characters are pharyngeal slits, notochord, nerve chord, endostyle and post anal tail
hemichordates have pharyngeal slits and a nerve chord
cephalochordates and urochordates have all 5
Urochordates are sister group to vertebrates
Jawless fishes -> gnathostomes
Jaws, paired pectoral and
pelvic fins, segmented
pharyngeal arches, paired
nasal openings
Actinopteygians (ray fins) vs sarcopterygians (lobe fins)
Musculature on body wall vs
fin, shoulder girdle connects
to many rays (radials and
lepidotrichia) vs to single basal
element
actinopterygians-> teolosts
Homocercal tail, circular scales
without ganoine, kinetic skull
Early amphibians -> amniotes
Egg with amniotic membrane, specialized
ankle bone (astragalus)
Dinosaurs -> birds
Character transformations leading to birds: feathers further developed for flight, hollow bones, fused clavicles (furcula = wishbone)
Characters present only in birds
pygostyle, synsacrum, carina/keel for flight
muscle attachment (lots of fusions)
amniotes->mammals
Sprawling to upright posture, jaw bones
move to ear, hair and milk glands
Hemichordates
share deuterostome pattern of cleavage and coelom formation, have pharyngeal slits and a nerve chord, terminal anus, three part body plan, enteropneusts and pterobranchs
Cephalochordates
rate marine environments Dorsoventrally inverted compared to hemichordates Characters: pharyngeal slits, hollow nerve chord, notochord,
postanal tail Relatively simple anatomy - headless wonder?
suspension feeders with oral hood and cirri, closed circulation but no heart just contractile vessels
urochordates
Have all five chordate characters: pharyngeal slits,
notochord (hollow), endostyle, hollow nerve cord, postanal
tail
* Have flexible outer body cover, a tunic and branchial basket
for filter feeding
* All species are marine
* Ascidians = swimming larvae, sessile adults
* Larvacians and thaliaceans = permanently pelagic
Notochord
Mesodermal
Rigid but flexible rod of cells and fluid, encased in a fibrous
sheath
Allows lateral flexion but prevents collapse during
locomotion
Ventral to nerve chord; dorsal to body cavity
pharyngeal slits
endodermal
* Pouches in the anterior end of the gut (pharynx)
* Mucus production
* Supported by a basket or other skeletal apparatus
* Functions in respiration and feeding
endostyle/thyroid gland
endoderm
* Likely homologous structures between chordates and
vertebrates
* Endostyle - glandular groove in floor of pharynx
* Involved in filter feeding
* Thyroid gland – endocrine gland that produces hormones
* Arises embryologically from groove in pharynx
* Both involved in iodine metabolism
* Example: lamprey with endostyle in juvenile and thyroid in
adult
Nerve cord
ectoderm
* Formed from folding/invagination of the neural plate
* Dorsal to the gut and notochord
* Hollow throughout its length
Postanal tail
ectoderm and mesoderm
Body extension beyond the level of the anus/posterior limit
of the gut
* Includes muscles, skeleton, notochord
* Functions in aiding locomotion
proboscis
found in enteropneusts, fleshy structure protruding anterodorsally over the dorsal surface of the snout in front of the nostrils.
Collar
found in enteropneusts (acorn worms), short fleshy collar that is used to bury in mud
Trunk
the body without the limbs
Oral/buccal cirri
feeding structures found in the oral hood of primitive jawless organisms called amphioxus
the first filter during feeding by eliminating unwanted large or noxious particulate
Tunic
firm but flexible body covering of tunicate
branchial/pharyngeal basket
the cartilaginous structure supporting the gills in protochordates and lower vertebrates plays an important role in food chewing, processing, and transport. found in urochordates and cephalochordates
Cranium
Structure made of bone and/or cartilage that houses and protects the brain, vertebrate innovation
Tripartite brain
vertebrate innovation
neural tube enlarged to form distinct brain (forebrain, midbrain, hindbrain)
Vertebral column
vertebrate innovation
Skeletal elements that surround
notochord
* Separated by intervertebral discs
or fibrous rings
* Neural and hemal arches
* Can include centrum that replaces
notochord
* Notochord reduced to
intervertebral space – nucleus
pulposus
Ostracoderms
Fossil jawless fishes
Bony shields, complex eye muscles, lateral line system
first appearance of paired fins with endoskeleton
Placoderms
fossil ganthostomes, encased in dermal armor, jaws with gnathal plates
pelvic claspers
elongated modifications of the pelvic fins, allows for facilitation of sperm transfer, originates as a chondrichthyan character
acanthostega and ichthyostega
Oldest known tetrapods: many digits,
sensory canals on skull, rudimentary
sacrum, notochord present in adult part of labyrinthodonts
Describe the different categories of skull fenestration, and the major groups they are found in
Diapsids – two skull fenestrae
* Early reptile relatives, Lepidosaurs (modern reptiles), Archosaurs (crocodiles & birds), and Turtles
* Synapsids – a single skull fenestra
Early mammal relatives, Modern mammals (Monotremes, Marsupials, Placentals)
turtles
Phylogenetic position uncertain, Ribs and bony scutes modified into dorsal carapace and ventral plastron, Pleurodires (lateral neck flexion) vs cryptodires (vertical neck retraction
Archosaur
Crocodiles + birds and all their ancestors, Includes dinosaurs, pterosaurs, other extinct groups
Monotremes
egg laying, platypus and echidna
Marsupials
pouch to house altricial young, lots of convergence with eutherians
Eutharians
placenta (most mammals)
rhynchoecephalians (tuatara)
lepidosaurs that ARENT squamates
transverse cloacal slit, paired hemipenes, intravertebral divisions for tail autonomy
skeletal muscular tissue
Contains multiple nuclei, Striations — alternating dark and light
bands, Voluntary — under conscious control
Cardiac muscle
limited to the heart wall
Short and branched with one centrally located nucleus, Intercalated discs join cardiomyocytes end
to end to provide electrical and
mechanical connection, Striated and involuntary
Smooth muscle
fusiform cells lacking striations, Cells are shorter and have one nucleus, Involuntary, Most is visceral muscle — walls of hollow
organ
Epithelia cells
sheets of closely adhering cells, one+ cells thick, Covers body surfaces and lines body cavities, Upper surface usually exposed to the environment or an internal space in the body, Avascular (does not have blood vessels), Epithelial cells are very close together; have a high rate of mitosis
simple epithelia
contain one layer of cells, all cells touch the basement membrane
stratified epithelia
contain more than one layer, named by shape of cells, some cells rest on top of others and do not touch basement membrane
simple squamous
simple epithelia, thin, scaly cells
simple cuboidal
simple epithelia, square/round cells
simple columnar
simple epithelia, tall, narrow cells
pseudostratified cilliated columnar
simple epithelia, every cell reaches the basement membrane (but not all cells reach the free surface)
keratinized stratified squamous
stratified epithelia, think callouses
non keratinized stratified squamous
stratified epithelia, eyes, lips, vagina
stratified cuboidal
stratified epithelia, cube shaped
urothelium/transitional
stratified epithelia, stomach lining
Connective tissue
Most have lots of
extracellular matrix (ECM)
(adipose is exception)
* General: consist of
fibroblasts
* Loose – mesenchyme,
adipose, areolar
* Fibrous – dense regular and
irregular
* Special : cartilage, bone,
blood, lymph
Areolar
loose connective tissue
loosely organized
fibers, abundant blood
vessels, and a lot of
seemingly empty space
* Fibers run in random
directions; mostly collagenous,
but elastic and reticular also
present
* Nearly every epithelium rests
on areolar tissue
reticular
loose connective tissue
mesh of reticular
fibers and fibroblasts
* Forms supportive stroma
(framework) for lymphatic
organs
* Found in lymph nodes, spleen,
thymus, and bone marrow
dense fibrous regular
connective tissue
densely packed,
parallel collagen fibers
* Compressed fibroblast
nuclei
* Elastic tissue forms wavy
sheets
dense irregular tissue
connective tissue
randomly arranged
collagen fibers and few
visible cells
* Withstands unpredictable
stresses
* In deeper layers of skin,
capsules around organs
adipose tissue
connective tissue (fat)
Tissue in which adipocytes are the dominant cell type
Fat is the body’s primary energy reservoir (triglyceride, recycled continuously)
White – main type, provides thermal insulation and cushions organs
Brown – in fetuses, infants, and children only; functions to generate heat
cartilage
connective tissue
chondroblasts produce matrice, chondrocytes are trapped cells, perricardium is dense irregular connective tissue surrounding elastic and hyaline cartilage
bone
osseous connective tissue
Bone cells: osteoblasts – build new bone, osteoclasts – remove existing bone,osteocytes – maintain bone
Also endochondral (preformed in
cartilage) vs intramembranous
(direct ossification)
spongey bone
porous appearance
* Delicate struts of bone:
trabeculae
* Found in heads of long bones
and middle of flat bones
lamellar bone
bone is deposited in
layers
* Typically slow-growing
* LAGs = lines of arrested growth
compact bone
denser, calcified
tissue with no visible spaces
* Found in shafts of long bones
(called cortical bone) and in
outer edges of flat bones
Non lamellar bone
collagen fibers
arranged irregularly in bone matrix
* Typically fast-growing
haversian bone
subtype of lamellar
* Arranged in cylinders that surround central canal
= osteons
* Blood vessels and nerves travel through central
canal, bone matrix is deposited in concentric rings
Hyaline cartilage
most common, not much collagen found in joins, respiratory tract, immature skeleton
fibrocartilage
reinforced with collagen fibers, exposed to tensile forces found in intervertebral discs, pubic sympysis, acetabular , foot and ankle
elastic cartilage
flexible, elastic fibers in matrix, ear larynx and epiglottis
neuroglia
glial cells, protect and assist neurons “housekeepers” of the nervous system
neurons
nerve cells, detect stimuli, respond quickly, and transmit coded
information rapidly to other cells