Evolution Flashcards

1
Q

What is Evolution?

A

•the process by which species change over time through genetic variation and natural selection
•organisms share a common ancestor but have diversified over time

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2
Q

What is Scientific Theory?

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•a well-substantiated explanation of some aspect of the natural world, based on a body of evidence repeatedly confirmed through observation and experimentation (e.g., the theory of evolution by natural selection by Charles Darwin)

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3
Q

Scientific Theory Common Misconceptions

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•a scientific theory not a “guess” or “hypothesis”
•it represents the highest level of scientific understanding, akin to a principle or law

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4
Q

Scientific Theory

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•it is not the same as a hypothesis, it is more then an educated guess, a scientific theory is an explanatory model that accounts for a very large body of evidence

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5
Q

Mutations: The Source of Genetic Variation

A

•changes in the DNA sequence
•create new traits by altering genes (e.g., mutation in a flowers pigment gene may result in a new colour)

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6
Q

Type of Mutations

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•Beneficial, Neutral, and Harmful

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7
Q

Beneficial Mutations

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•can improve survival (e.g., antibiotic resistance in bacteria)

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8
Q

Neutral Mutations

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•no immediate effect but adds genetic diversity

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9
Q

Harmful Mutations

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•may cause diseases or reduce reproductive success

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10
Q

Mutation’s Consequences for Humans

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•some mutations have serious consequences for human health
•ex. viruses, like living cells, carry genetic information that can undergo mutations, this means that populations of disease-causing viruses, such as the human influenza virus, are genetically variable and change overtime

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11
Q

Selective Breeding: Artificial Selection of Traits

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•humans intentionally breed plants and animals for specific traits (e.g., faster racehorses, sweeter fruits, and disease-resistant crops)
•they select individuals with desired traits and breed them together and repeat it over generations to enhance the trait

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12
Q

Artificial Selection

A

•a biological process where humans choose which organisms to reproduce based on certain traits
•after generations, artificial selection can produce dramatic changes in the traits of a population (e.g., dog breeding)
•limited by genetic variability within the breeding population, practice can reduce overall genetic diversity of population and can therefore contribute to the loss of biodiversity

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13
Q

Artificial Selection in Plants

A

•the goal is to produce plants that have improved yield, resistance to pests, or specific qualities like size, flavor, or appearance

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14
Q

The Science of Breeding

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•breeding selected individuals with certain favoured traits will result in the favoured traits becoming more prevalent and more pronounced
•independent variable: breeding population (selected by the breeder)
•dependent variable: appearance of favoured trait in the population

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15
Q

The Power of Artificial Selection

A

•the most unexpected result of artificial selection is the production of individuals that exhibit traits that are far beyond the natural variability witnessed in the original breeding population
•looking back to the original traits of the first plants, no one could have imagined the power of selective breeding (e.g., giant pumpkins and texas longhorns)

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16
Q

The 100 Year Experiment

A

•the longest running experiment in artificial selection that began in 1896 and is still running today
•the purpose of the study was to test the effect of artificial selection on the oil content of corn seeds, it involved two separate breeding experiments, in the first, they were selected for high oil content and in the second, they were selected for low oil content

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17
Q

Limitations of Artificial Selection: The Influence of Mutations

A

•role of mutations: mutations can introduce unexpected traits during breeding, complicating the process
•unintended consequences: loss of genetic diversity (e.g., inbred populations)
•Increased susceptibility to diseases (e.g., monoculture crops which is one crop grown in a large area or field)
•natural constraints: not all traits can be altered without side effects

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18
Q

Implications for Natural Populations

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•all species exhibit genetic variation, mutations produce heritable changes in individuals, and these changes may be beneficial, harmful or neutral
•some species, such as bacteria and insects, can change over relatively short periods of time due to reproduction rate, some domesticated species have changed dramatically under the influence of artificial selection such as corn and its oil content
•these observations are based on a large number of species that have been domesticated over relatively short periods of time

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19
Q

The Seeds of an Idea

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•a French scientist, Comte (Count) Georges-Louis Leclerc de Buffon (1707-1788), applied scientific methods to the detailed study of anatomy
•he was puzzled by anatomical features that seemed to serve no purpose, he believed species were created in a more perfect form but changed overtime

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20
Q

The Seeds of an Idea (cont.)

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•at about the same time Carl Linnaeus (1707-1778) and Erasmus Darwin (1731-1802), also purposed that life changed over time
•Erasmus Darwin, grandfather of Charles Darwin, even purposed that all life might have evolved from one single source

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21
Q

Adaption and Heredity

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•a student of Buffon’s, Jean-Baptiste Pierre Antoine de Monet, Chevalier de Lamarck proposed evolutionary change came from two distinct principals; use and disuse, he believed that structures an individual used became larger and stronger
•Lamarck’s second principal was the inheritance of acquired characteristics, he believed that individuals could pass down certain characteristics (e.g. he believed that if an adult giraffe stretched out its neck over its lifetime, then its offspring would be born with slightly longer necks)

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22
Q

Adaptation and Heredity: Lamarck’s Contributtions

A

•Despite Lamarck’s flawed theory, he did make a number of very significant contributions such as:
•all species evolve over time
•a species evolves in response to its environment and becomes better adapted to that environment
•changes are passed on from generation to generation

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23
Q

Patterns of Change

A

•scientists found evidence of this change in fossils
•a minimum age of 10000 years is used as a criterion for designating remains as a fossil
•most fossils are hard impressions in solid rock, many leave little doubt what they represent

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24
Q

Fossil Formation

A

•necessary conditions for fossil formation are rare, happens most with aquatic organisms and hard body parts such as bones, teeth and shells, plants and dinosaur fossils are more rare
•sometimes an entire organism may become trapped and preserved in amber (fossilized tree sap)
•similar well preserved fossils are formed when organisms are trapped in volcanic ash, ice formations like permafrost or acidic bogs

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25
Reading the Fossil Record
•at first scientists thought that fossils were just trapped organisms, then there were some observations they could not explain, fossils appeared to be of unusual or unknown organisms, or organisms that are no longer alive, there are no fossils of current living species •fossils are buried very deep, often below the earth’s surface, fossils are found in unexpected places (e.g. sea life fossils are found in mountains or present-day deserts)
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Fossil Record
•these fossil questions intrigued scientists who wanted to know more about them •the study of fossils to learn about prehistoric life emerged- paleontology, around this time geology, the study of Earth’s physical structure emerged as well, two scientists provided a wealth of new evidence on how species of Earth might’ve changed over time (Georges Cuvier & Charles Lyell)
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Georges Curvier
•palaeontologist that discovered fossils of simple organisms were found at all fossil depths, fossils of more complex organisms were only found in shallower depths, in younger rock, these shallow depth fossils resembled living species, some rock layers contained fossils of species that did NOT occur in the layers above or below them
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Catastrophism (Georges Curvier)
•although there was a clear pattern of change from layer-to-layer Cuvier proposed the theory of Catastrophism •rather than life evolving he felt that global catastrophes like floods caused extinction then a new set of species replaced the old ones •Cuvier’s theory accounted for the different species in each layer but not how they became progressively more complex
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Uniformitarianism & Charles Lyell
•Lyell came to the opposite conclusion of Cuvier, he put the following principals of Uniformitarianism in his book Principals of Biology •Earth has been changed in the past by the same processes that are happening now, geological change is slow and gradual, natural laws that influence these changes are constant and they were operating in the past, the same way they are today •although Lyell’s ideas were radical, he was right, earth was very old and mountain ranges were formed by extremely slow processes and gorges by very slow erosion
30
The Stage is Set for Charles Darwin
•by the 19th century there was growing evidence that Earth was ancient and that species might be evolving •the mechanisms for this could not yet be explained •the search for this mechanism became the life’s work of a young man named Charles Darwin
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Evolution
•the change to a population over time •theory: an explanation of scientific phenomena that is based on observation, experimentation, and reasoning: scientific research •theories are redefined or confirmed by extensive research from many independent sources, the strength of a theory depends on the amount of research that confirms it
32
Charles Darwin
•born in 1809, son of a British physician, he dropped out of med school, graduated with a BA from Cambridge university in 1831 and became a naturalist -> collected and studied specimens •in 1831 he took a job on a ship, the HMS Beagle which was a survey ship on a 5 year mission around the world •during this time he took many observations and began to see that organisms change over time
33
Charles Darwin Continued
•evolution had been accepted throughout the scientific community for a long time before Darwin. •The mechanism for evolution however wasn’t understood, modern genetics had not yet been discovered •Darwin did not understand the concept of genes, mutations, etc, yet ideas of inheritance and populations were understood and he based his theory on these findings
34
Other Important Discoveries- Supporting Evolution
•Gregor Mendel- 1866, provided a mechanism to explain how genes were passed down •Watson & Crick’s Model of DNA – 1953, presented the double helix structure •The Human Genome Project – 2003, determined the sequences of chemical base pairs that make up human DNA
35
Key Components to Darwin’s Theory
•Variation- the differences between members of a population •Competition- the struggle for resources with other individuals with similar needs for the same or similar resources •Adaptation- an inherited trait that benefits an organism •Fitness- a measure of an individual's ability to pass on his/her traits, the ability to survive and reproduce in a specific environment
36
Darwin’s Ideas
•all species are related by a common ancestral organism, over long periods of time (millions of years), populations that descended from this common ancestor changed, (accumulated different modifications) in order to survive in their environment (because they had spread in different habitats) •As a result, these population types became: different from their ancestral type and different from other descendent population (a common ancestor gives rise to 2 new species, which then give rise to 2 species each, you end up with 6 species from a common ancestor)
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Why and How do Populations Change?
Population Growth- limited by natural hindrances to growth, many factors prevent populations from growing, and many individuals in a population must struggle to survive (and many don’t make it) (e.g., resources such as food and shelter support only a limited number of organisms) Selective Breeding- creates change to domesticated plants and animals, humans choose to allow only those individuals with desirable traits to breed, so only desirable traits get passed on to the next generation, and less desirable traits are eliminated, this accounts for the many different domesticated breeds that exist today
38
The Origin of Species
•after Darwin read Lyell’s Principle of Geology he realized around 1836, that new species could arise from an ancestral form by the gradual accumulation of adaptions to a different environment •in 1840, Natural Selection as the means of evolution -> wrote a long essay •in 1858, Alfred Wallace (1823-1913) sent Darwin a manuscript *proposed Theory of Natural Selection, identical to Darwin! +Lyell presented the paper at a conference •in 1859, Darwin finally completed “The Origin of Species by means of Natural Selection” and given the credit for the work •Darwin’s Theory of Evolution was a means to explain the diversity of life on Earth and how all organisms are related to one another and to the environment in which they live •it addressed the issues of Biology: 1. Great diversity of organisma 2. Their origins and relationships 3. Similarities and differences 4. Geographic distributions 5. Adaption to surrounding environment
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Darwin made the Arguments
•1. Species were not created in their present forms but had evolved from ancestral species. •2. Proposed a mechanism for evolution •Natural selection- a population of organisms can change over time as a result of individuals with certain heritable traits leaving more offspring than other individuals •this is due to •i) Struggle for existence- direct competition among individuals within and outside of population •ii) Trait Heritability - variation and differences among members of the same species can suit the environment and increase fitness •iii) Survival of the fittest- only those that can cope will survive AND this is dependent upon environment
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Homologous Features
•structures in different species that share a common ancestral origin but may serve different functions •similar structure, different function •evidence of divergent evolution (e.g., forelimbs of humans, bats, and whales (used for different purposes like grasping, flying, and swimming)) •also share homologous developmental processes
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Analogous Features
•structures in different species that perform similar functions but do not share a common ancestral origin •similar function, different structure •evidence of convergent evolution (e.g., wings of birds, bats, and insects (adapted for flying but evolved independently))
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Vestigial Features
•structures in an organism that have lost most or all of their original function through evolution (e.g., pelvic bones in whales: evidence of terrestrial ancestry) •evidence of evolutionary history •shows adaptation to changing environments
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Anatomical Oddities
•unexpected or unusual physical features in organisms, often resulting from evolutionary quirks or adaptations (e.g., Giraffe's laryngeal nerve: loops down the neck unnecessarily due to evolutionary constraints) •highlights the complexity and imperfections of evolution •reflects survival-driven changes over time
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Competition Within Populations
•resource limitation: scarcity drives competition •survival of the fittest: stronger or better-adapted individuals have an advantage •population regulation: Helps maintain balance and prevents overpopulation •evolutionary pressure: Promotes adaptations to improve survival and resource use
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Modern Theory of Evolution
•since Darwin, genetics has allowed scientists to uncover the mechanism of heredity and the source of variation •geology has advanced allowing us to interpret the fossil record extensively •these advances have allowed us to confirm Darwin’s theory and further understand new evidences
46
Reading the Fossil Record Review
•at first scientists thought that fossils were just trapped organisms •then there were some observations they could not explain fossils appeared to be of unusual or unknown organisms, or organisms that are no longer alive, there are no fossils of current living species, are buried very deep, often below the earth’s surface, are found in unexpected places (e.g., sea life fossils are found in mountains or present-day deserts)
47
Fossil Record
•these fossil questions intrigued scientists who wanted to know more about them •the study of fossils to learn about prehistoric life emerged- paleontology •around this time geology, the study of Earth’s physical structure emerged as well •two scientists provided a wealth of new evidence on how species of Earth might’ve changed over time
48
The Age of Earth
•it wasn’t until the twentieth century that new sciences like paleontology and geology cast doubt that the earth was young… they used to believe the earth was 10 000 years old •also doubt that current organisms were always in that •modern geology, physics and astronomy all conclude that the earth is about 4.5 billion years old
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Radiometric Dating (Carbon Dating)
•palaeontologists can now use radioisotopes to date rocks very precisely •radioisotopes = atoms that undergo radioactive decay at a constant rate
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The Modern Synthesis
•genetics and other fields of biology combine to form the modern evolutionary synthesis which forms the basis for all work in evolutionary biology •today scientists discuss changes in the gene pool of a species over time vs changes in inherited traits of a species over time that Darwin described •gene pool= the alleles in a species or population •Individuals vary in their traits because they inherit different combinations of alleles •Natural selection acts to favour some genetic combinations over others
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Mutations- The Source of Variation
•all species have variation due to different combinations of the many alleles that are present in the population •sexual reproduction recombines these alleles and produces an almost unlimited number of combinations of the varied gamete cells (due to meiosis) •new or altered traits can arise from mutations that are naturally selected •mutations are a change in the genetic DNA -> switched, lost, new inserts •duplication of genes can also occur during crossing over in meiosis
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What do these Mutations Mean?
•deletions often result in a low chance of survival •extra info can result in viable genes •scientists studied the gene responsible for the production of amylase which acts on starch– people of Japanese descent with high starch diets had multiple copies of the gene while people in the Amazon rainforest whose diet was low in starch had no extra genes. •this shows how a mutation became beneficial for the Japanese population
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Mutation Rates
•when DNA is replicated the danger rate is less than one mutation in a million DNA bases •organisms have genomes consisting of millions and billions of DNA bases + populations have millions of individuals •some studies suggest that humans have mutation rates averaging 20 or more per individual •even if the mutations are neutral that means that our population is carrying over 100 billion genetic mutations
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Homologous Genes
•closely related species share many homologous features such as the arrangement of bones because they share a common ancestor. •similarly they share homologous genes •these genes mutate and evolve over time •this provides evidence of relatedness between species
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Pseudogenes
•are genes that have undergone mutations and no longer serve a useful purpose •like vestigial anatomical features (e.g., dolphins breathe through their noses but don’t need a sense of smell. Most mammals use 1000 olfactory receptors, dolphins have 1000 but only use 200) •Pseudogenes are found in virtually all species
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Modern Paleontology
•over the last 100 years, many important fossil discoveries have been made •they have enhanced our understanding of evolution •fossils and their distribution provided Darwin with important evidence for evolution •today the study of biogeography and plate tectonics and continental drift helps explain how some species ended up in certain areas •species distribution is captured in the fossil record •Fossil records support the theory of evolution •modern biology supports evolution through molecular genetics and geology as well •this has allowed us to understand the source of variation within species
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Natural Selection
•evolution happens when natural selection acts on the genetic probability within populations •genetic variation arises by chance through mutations and recombination •natural selection does NOT occur by chance •the environment favours certain individuals over others
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Theory of Evolution by Natural Selection
•Darwin was hesitant to publish, even after he read Thomas Malthus “Principles of Populations” •he knew from his readings that populations are affected by natural hinderances to growth •factors such as disease, famine and drought prevent populations from growing and many individuals in a population must struggle to survive AND many don’t make it •Darwin proposed that this struggle for survival could result in the selecting of specific traits
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The Red Queen Hypothesis
•the environment is constantly changing •natural selection operates to enable the organisms to maintain their state of adaption (not to improve it) •for a species to remain in a constantly changing environment, it must have enough of the right kind of heritable variation to change along with the environment •if genetic variation is inadequate the species will go extinct
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Survival of the Fittest
• is synonymous with natural selection •natural selection is the driving force of evolution where only the fittest survive to reproduce again and pass on their genes
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Sickle Cells
•this is a good example of how a mutation and natural selection can lead to a change in one population •it is a single base mutation in DNA coding for hemoglobin •individuals who are heterozygous for the allele are resistant to malaria •if you are resistant to malaria, you live to reproduce and pass this mutation on •the population changes and over time the frequency of the allele increases
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Antibiotic Resistance- Natural Selection in Bacteria
•Antibiotic resistance is a type of drug resistance where a microorganism is able to survive exposure to an antibiotic •the increasing prevalence of antibiotic-resistant bacteria is due to the overuse of antibiotics via incorrect diagnosis, unnecessary perscriptions, improper use of antibiotics by patients and the use of antibiotics as livestock food additives
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Types of Selection
•selective pressures can be high or low •they can result from any number of abiotic or biotic availability or predators– even your choice of mate •these selective pressures can result in different patterns of natural selection
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Stabilizing Selection
•the most common form of selection •once a species becomes adapted to its environment, selective pressures maintain their evolved features and traits •occurs when the most common phenotypes within a population are favoured by the environment
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Directional Selection
•when the environment favours individuals with more extreme variations of a trait •when an organism migrates to a new environment, or when its habitat changes, it will encounter new forces of natural selection •may result in an observable change in a population (e.g., pesticide resistance in insects, decreasing size of pink salmon)
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Disruptive Selection
•favours individuals with variations at opposite extremes of a trait over individuals with intermediate variations. •sometimes, environmental conditions may favour more than one phenotype •Phenotype: the set of observable characteristics of an individual (e.g., African black bellied seed-cracker finches)
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Genetic Drift: Random Changes in Allele Frequencies
•random changes in allele frequencies within a population over generations, especially in small populations •Random Effect: Changes are not due to natural selection •Significant in Small Populations: The smaller the population, the larger the impact •Can Lead to Fixation or Loss of Alleles: Certain alleles can become dominant or disappear entirely by chance
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The Bottleneck Effect
•a sharp reduction in population size due to a sudden environmental event (e.g., natural disasters, habitat destruction, disease) •results in reduced genetic diversity and altered allele frequencies in the surviving population 1.Random Survival: Survival is often unrelated to genetic traits, making it a stochastic process 2.Loss of Genetic Variation: Many alleles may be lost, leaving the population with less genetic diversity 3.Potential for Inbreeding: Smaller populations are more prone to inbreeding, which can lead to an increased prevalence of harmful trait
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Founder Effect
1.The founder effect occurs when a small group of individuals establishes a new population that is isolated from the original group 2.This small "founding" population carries only a fraction of the genetic diversity of the original population 3.Reduced Genetic Variation: The new population may have less genetic diversity compared to the original population 4.Allele Frequency Shifts: Certain alleles may become more common purely by chance, while others may be lost entirely 5.Increased Genetic Drift: Small population size amplifies the impact of genetic drift, further altering allele frequencies over time
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Hardy-Weinberg Principle
•in large populations in which only random chance is at work, allele frequencies are expected to remain constant from generation to generation •in an environment where no selective pressures are present
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Hardy-Weinberg Equilibrium
•there are 5 assumptions of the Hardy-Weinberg Equilibrium: 1)No Natural Selection 2)No Mutation 3)No Migration 4)A Large Population 5)Random Mating Occurs
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Homozygous Dominant
•two dominant alleles (GG)
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Heterozygous
•one dominant and one recessive allele (Gg)
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Homozygous Recessive
•two recessive alleles (gg)
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Phenotype
•the observable expression of an individual's genotype is called their phenotype. A person's phenotype is the result of the interaction between their genotype and their environment
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Genotype
•a genotype is the genetic makeup of an organism or individual, which is determined by the DNA sequence at a specific location in the genome
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Equations of Hardy-Weinberg
1) p + q = 1 2) p2 + 2pq + q2 =1
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Real World Applications of Hardy-Weinberg
•Tracking Genetic Disorders: Helps estimate carrier frequencies in populations (e.g., cystic fibrosis) •Understanding Evolutionary Forces: Detects when populations deviate from equilibrium due to mutation, selection, or drift •Conservation Biology: Guides efforts to preserve genetic diversity in small populations
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Factors that Disrupt Equilibrium
•Mutation: Introduces new alleles into the population •Natural Selection: Changes allele frequencies based on survival and reproduction •Genetic Drift: Random changes in small populations •Gene Flow: Movement of alleles between populations •Non-Random Mating: Increases homozygosity or heterozygosity
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Adaptive Radiation
•the relatively rapid evolution of a single species into many new species, filling a variety of formerly empty ecological niches (e.g., the Galapagos Finches)
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Divergent Evolution
•when two or more species evolve from a common ancestor, becoming increasingly different over time •driven by adaptation to different environments or niches •leads to homologous structures (similar structures with different functions, e.g., forelimbs of vertebrates) (e.g., humans and apes)
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Convergent Evolution
•when unrelated species evolve similar traits due to similar environmental pressures •results in analogous structures (different structures with similar functions, e.g., wings of bats and insects)
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Co-evolution
•occurs when two or more species influence each other’s evolution through close ecological interactions (e.g., Brazil nut trees and the agouti)
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Macroevolution
•is large scale evolutionary changes including the formation of new species and new taxa •Taxa: a taxonomic group of any rank, such as a species, family, or class (e.g.,Reptilia, Mammalia)
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Cladistics and Phylogeny
•Cladograms are used to illustrate the evolutionary relationships or phylogeny of different groups of species of organisms •by examining a cladogram, one can infer what groups are more closely related and the general sequence of events that gave rise to each group (e.g., birds are more closely related to dinosaurs than mammals) •Phylogeny: the evolutionary history of a group of organisms, and is often represented as a phylogenetic tree
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Cladograms vs Phylogenetic Trees
•a cladogram is a diagram that displays the relationship between characteristics of living organisms. It contains branches sorted by traits such as bone structure, number of wings, or petal type •a phylogenetic tree is a diagram that displays genetic relationships.
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Theory of Punctuated Equilibrium vs Gradualism
•Phyletic gradualism- evolution occurs by the gradual accumulation of small changes. The intermediate stages of evolution not represented by fossils merely testifies to the incompleteness of the fossil record •Punctuated Equilibrium- evolutionary history consists of geologically long periods of stasis with little or no evolution, interrupted or "punctuated" by geologically short periods of rapid evolution
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Modern Beliefs
•we now know after completing the fossil record that evolution is gradual •we know this because of transitional forms. These are species that are the intermediate form between two species in a direct line of descent
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Speciation
•the process through which new species arise from existing species •it explains the diversity of life on Earth •Allopatric and Sympatric Speciation
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What is a Species?
•a group of organisms that can interbreed and produce fertile offspring •reproductive isolation is crucial for defining species
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Mechanisms of Reproductive Isolation
•Prezygotic Barriers: Prevent mating or fertilization (e.g., temporal isolation, behavioral isolation) •Postzygotic Barriers: Reduce viability or fertility of hybrid offspring (e.g., hybrid sterility)
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Allopatric Speciation
•occurs when populations are separated by a physical barrier (e.g., mountains, rivers) •Geographic Separation isolates populations •Independent Evolution due to mutations, natural selection, and genetic drift •Reproductive Isolation develops over time (e.g., Darwin’s finches on the Galápagos Islands)
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Sympatric Speciation
•occurs within the same geographic area •Polyploidy: Common in plants where chromosome duplication creates reproductive isolation •Behavioral or Ecological Isolation: Changes in mating preferences or resource use (e.g., Apple maggot flies that shifted from hawthorn to apple trees)
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What Drives Speciation?
•Genetic Variation: Provides raw material for evolution •Natural Selection: Drives divergence between populations •Genetic Drift: Random changes in small populations •Environmental Changes: Create new selective pressures
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Human Impact in Speciation
•Habitat Fragmentation: Creates opportunities for allopatric speciation •Pollution: Can drive rapid changes in some species •Introduction of Invasive Species: Disrupts existing ecosystems •Conservation Efforts: Aim to preserve biodiversity and prevent extinctions