Enzyme Kinetics Flashcards

1
Q

What is the half-life of a reaction?

A

The time taken for half of the reactant, which is initially present, to be used up.

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2
Q

How can you determine whether or not a reaction is second order?

A

Plot 1/[S] against time- if the plot is a straight line, it is second order.

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3
Q

How can you determine whether or not a reaction is first order?

A

Plot ln[S] against time- if the plot is a straight line, it is first order.

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4
Q

How can rate laws be determined experimentally?

A
  • absorption measurements, using a spectrophotometer.
  • conductivity measurements, using a reaction between ions in solution.
  • polarity measurements, for reactants and products that are optically active.
  • using an aliquot method, by titrations.
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5
Q

What does the collision theory state?

A

A bimolecular reaction occurs when two properly orientated reactant molecules come together in a sufficiently energetic collision.

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6
Q

What is the relationship between kinetic energy and absolute temperature?

A

The average kinetic energy of a collection of molecules is proportional to the absolute temperature.

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7
Q

Describe an Arrhenius plot.

A

lnK against 1/T gives gradient -Ea/R and y intercept lnA.

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8
Q

What is the steady state assumption in the Michaelis-Menten equation?

A

The rate of ES production is equal to the overall rate of all the reactions that decrease [ES].

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9
Q

What is the Km?

A

The substrate concentration at which the reaction rate is half the maximal rate (Vmax).

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10
Q

What does it mean if an enzyme has a low Km?

A

It achieves maximal catalytic efficiency at low [S].

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11
Q

What is Kcat?

A

The turnover number- the number of reaction processes that each active site catalyses per unit time.

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12
Q

What are the disadvantages of the Lineweaver-Burk plot?

A

Most measurements of [S] are at high values, and the 1/[S] values end up crowded on the left side of the graph- makes drawing the straight line difficult and inaccurate.
For small [S], there can be large errors in Km and Vmax.

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13
Q

What are the disadvantages of the Hofstee-Eadie plot?

A

Can have large errors- both coordinates contain the dependent variable.

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14
Q

What are the advantages of the Hanes-Woolf plot?

A

There is equal weighting of the data, so a better fit of the straight line.

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15
Q

How does pH affect the rate of an enzyme catalysed reaction?

A

V follows a bell shaped curve.

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16
Q

Why is the rate of reaction of an enzyme catalysed reaction affected by pH?

A

There is pH sensitivity in substrate binding. The substrate can be ionized. There can be protein structural changes at extreme pH values.

17
Q

What are bisubstrate reactions?

A

Reactions that use two substrates and form two products.

18
Q

What types of reactions can be bisubstrate reactions?

A

Transferases- functional group is transferred between the substrates.
Redox- reducing equivalents are transferred between substrates.

19
Q

What is a sequential enzyme mechanism?

A

All substrates must combine with the enzyme before the reaction can occur and products can be released.

20
Q

What is the difference between an ordered sequential mechanism and a random sequential mechanism?

A

Ordered- each substrate binds in a specific order and each product is released in a specific order.
Random- allows substrates to bind in any order and then products to be released in any order.

21
Q

What is ping-pong kinetics?

A

One or more products are released before all of the substrates have bound to the enzyme.

22
Q

How are the number of products/reactants specified in ping-pong kinetics?

A

As uni, bi, ter and quad.

  • a reaction with one substrate and two products = uni bi
  • a reaction with two substrates and two products = bi bi
23
Q

What type of enzymes do not follow Michaelis-Menten kinetics and why?

A

Enzymes that are allosterically regulated, due to cooperativity.