Enzyme and restriction mapping Flashcards

1
Q

What type of proteins is genetic engineering use to produce?

A
  • Recombinant proteins
    - Insulun
    - Interferon
    - G-CSF
  • Transgenic organisms
    - Disease models
    - Improved agricultural yields
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2
Q

What do nucleases degrade and how?

A

Degrade nucleic acids by hydrolysing phosphodiester bonds

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3
Q

What does ribonuclease degrade?

A

Degrades RNA

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4
Q

What does DNase degrade?

A

Degrades DNA

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5
Q

What does exonuclease degrade?

A

Degrade from the end of the molecule

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6
Q

What does endonucleases degrade?

A

Degrade within nucleotide chain

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7
Q

What are the 2 things that restriction endonucleases do?

A
  1. Recognise a specific sequence

2. Cut that sequence

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8
Q

Physiology behind restriction

A

Limit transfer of nucleic acids from infecting phages into bacteria

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9
Q

Where are the many different enzymes of restriction endonucleases from?

A

Many different enzymes from different bacteria

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10
Q

What can some nucleases produce?

A

Some nucleases produce an overhang and some produce a blunt end

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11
Q

What are restriction maps?

A

Map of restriction sites within a molecule

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12
Q

What way is useful for describing plasmids?

A

Restriction maps are a useful way of describing plasmids

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13
Q

Restriction enzymes in molecular diagnostics

A

Sickle cell anaemia:

  • Single point mutation
    - A–>T resulting in Glu–>Val
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14
Q

What can single nucleotide changes do?

A

Single nucleotide changes can create/destroy restriction enzyme sites

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15
Q

What does DNA ligase do and how?

A

-Puts 2 fragments together

Does this by repairing nicks in phosphodiesterase backbone

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16
Q

What does DNA polymerase do?

A

DNA synthesis in 5’ to 3’ direction

17
Q

What are the uses of DNA polymerase?

A
  • PCR amplification
  • Generation of probes
  • Blunt ending of DNA overhangs
18
Q

What do phosphatase’s do?

A

Hydrolyses a phosphate group off its substrate

19
Q

What are phosphatase’s used to prevent?

A

Used to prevent cut plasmids from resealing

20
Q

What do polynucleotide kinases do?

A

Adds phosphate to 5’ hydroxyl group of DNA or RNA

21
Q

What are polynucleotide kinases used for?

A
  • To phosphorylate chemically synthesised DNA so that is can be ligated to another fragment
  • To sensitively label DNA so that it can be traced using:
    - Radioactively labelled ATP
    - Fluorescently labelled ATP
22
Q

What are probes?

A

Fragments of ssDNA

23
Q

What are probes complementary to?

A

Probes are complementary to the gene of interest

24
Q

What type of enzyme is a reverse transcriptase?

A

A RNA dependent DNA polymerase

25
Q

How are RNA transcriptase collected?

A

Isolated from RNA-containing retroviruses

26
Q

What does RNA transcriptase facilitate in the synthesis of?

A

Synthesises a DNA molecule complementary to a mRNA template using dNTPs

27
Q

What does reverse transcriptase require?

A

Requires primers

28
Q

Priming for Reverse transcription (Random primers)

A

Cover all of the length of all of the RNA molecule

29
Q

Priming for reverse transcription (Oligo(dT))

A

Useful for cloning cDNAs and CDNA libraries, but some might not be full length