electrophoresis Flashcards
What are the two kinds of electrophoresis?
- Zone electrophoresis (majority)
- Moving Boundary Electrophoresis
What is Zone electrophoresis?
Moving proteins through a solid medium/matrix.
What are the types of Zone electrophoresis?
- Paper electrophoresis (cellulose acetate)
- Gel electrophoresis (agarose or polyacrylamide gel)
What is Moving Boundary Electrophoresis?
Moving proteins through an aqueous type of medium.
What are the types of Moving Boundary Electrophoresis?
- Capillary electrophoresis
- Immuno electrophoresis
What are the components of electrophoresis?
- Driving force - power supply
- Support medium - agarose gel, etc.
- Buffer
- Sample
- Detection System
What role does the buffer play in electrophoresis?
Serves as an important component; connects the sample and electrical force, dictates pH.
What happens to proteins at different pH levels?
pH > pI: Negative charge
pH < pI: Positive charge
What is the goal of electrophoresis?
To ensure all proteins have the same charge.
What is the charge state of most proteins?
Most are isoelectric: neutral and will not be moving.
Why do negatively charged proteins absorb less water?
Negatively charged proteins absorb less water and buffer than positively charged proteins.
Which direction do serum proteins migrate?
Serum proteins migrate toward the anode, starting at the cathode.
What factors affect the movement of proteins?
- Weight of protein
- Velocity (depends on charge and strength of electrical field)
- Medium used
- Temperature
What is the maximum temperature for maintaining proteins during electrophoresis?
Heat cannot be above 55 degrees; will denature proteins.
What is the importance of ionic strength in electrophoresis?
Ionic strength directs migration; too low enhances movement, too high makes it sluggish.
What is the normal ionic strength range for electrophoresis?
Normal strength = 0.01 - 0.1
What materials are used for electrophoresis?
Proteins easily migrate in cellulose acetate and/or agarose gel.
maintain even temp
do not absorb water or buffer from system
prevent endo electrical osmosis
What is the advantage of polyacrylamide gel?
More separation of proteins; separates based on molecular weight.
called poly because of diff layers of agarose gel
What is a common specimen used in electrophoresis?
Serum, diluted in buffer.
can also use urine /CSF
-no dilution; concentrate then
What is the typical volume of specimen used in electrophoresis?
Use 2-5 mL of specimen.
What should be done before running electrophoresis?
Plug in the power supply before putting proteins in (like warm up the oven.)
What are common detection methods in electrophoresis?
Stains such as ponceau (cellulose acetate) and coomassie blue (any agarose gel).
What is bromocresol purple used for?
Used in place of coomassie blue at pH 5.2 (proteins positively charged).
What is bromocresol green/yellow dye used for?
Used for detection of albumin.