DNA structure 2 Flashcards
are the building blocks of nucleic acids
Nucleotides
Nucleotides are the building blocks of nucleic acids and consists of 3 components:
a nitrogenous base, pentose sugar and a phosphate group.
Two types of nitrogen bases are found
purines and pyrimidines
Purines
Double ringed
adenine (A) and guanine (G)
Pyrimidines
single ringed
cytosine (C), thymine (T) and uracil (U).
The base T, however, is only ever found in
DNA, while RNA has U in its stead
The pentose sugars from which DNA and RNA are made-up of are also different, resulting in their different names
RNA contains ribose, while DNA is made-up of deoxyriboses.
Difference between ribose and 2-Deoxyribose?
Ribose has an OH on carbon 2 and deoxyribose only has an H
Why 2-Deoxyribose
Carbon 2 has hydroxyl group replaced by a H atom
Nucleoside
nitrogen base plus pentose sugar
Nucleotide
Nucleoside + a phosphate group
Depending on the amount of phosphate groups that are attached to the nucleoside (1,2 or 3 respectively), the molecule can be called a…
nucleoside monophosphate (NMP) nucleoside diphosphate (NDP) nucleoside triphosphate (NTP).
Polynucleotide
Nucleotides are joined to each other by a phosphate group linking the two sugars
The joining of two nucleotides forms a dinucleotide. Following the same logic trinucleotides, oligonucleotides (less than 30 nucleotides) and polynucleotides (more than 30) are formed.
Link between two nucleotides (polynucleotide)
phosphodiester bond
“Normal” DNA is made-up of extremely long
polynucleotide chains.
Explain the specific bonding in nucleosides/nucleotides
- The pentose sugar is always bonded to the base via carbon one.
- This is then attached to N1 of pyrimidine bases or N9 on purine bases
- Phosphate is always bonded to C5 of pentose sugar
A nucleotide can also be called a
nucleoside mono-phosphate
What form of nucleotides act as precursors for nucleic acid synthesis ?
NTP - deoxynucleoside triphosphate
ATP and GTP
Deoxyadenosine triphosphate
Deoxyguanine triphosphate
why do ATP and GTP provide energy to the cell?
Due to the large amounts of energy involved in adding or removing the terminal phosphate from the molecule
2 adjacent nucleotides are joined by a phosphodiester bond which is formed by:
The phosphoric acid moiety joining to 2 alcohols
- namely the 2 hydroxyl groups which were formally attached at positions C5 and C3 of the adjacent sugars
what direction is a phosphodiester bond
3’ to 5’ phosphodiester bond
Base composition studies performed by
Chargaff
Base composition studies showed:
that DNA contained equal amounts of adenine and thymine molecules, while the amounts of cytosine and guanine correlated.
Additionally, the sum of the purines (A + G) are equal to the sum of the pyrimidines (C + T).
In contrast, the ratio (A + T)/(C + G) does not necessarily equal one.
This is is because A binds only to T and C binds only to G
The final solution to understanding the DNA structure (double helix) was provided by X-ray diffraction…
Rosland franklin
How does RNA structure differ from DNA?
Ribose instead of deoxyribose
Uracil instead of thymine
Single stranded, linear molecule
Three types of RNA - with different functions
Three types of RNA
ribosomal RNA (rRNA), messenger RNA (mRNA) transfer RNA (tRNA)