Differentiation, Development and Apoptosis Flashcards

1
Q

Provide a brief overview of cellular development

A
  • Genes are not gained of lost in the normal course of development
  • Their expression is controlled
  • Differentiation is determined by the selective expression of genes within a cell
  • Thus different cells express different proteins
  • Cells commit to certain fates
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2
Q

What is differentiation and how does it occur in a spatio-temporal manner

A
  • Cells differentiate to carry out specialised functions, produce specific proteins
  • Preceded by rapid proliferation
  • DNA orchestrated set of cellular changes that normally occurs without error
  • Development of specialised cells recognised morphologically
  • Regulation of gene expression in a spatio-temporal manner (integration / coordination of events)
  • Spatial: Cell fate / differentiation patterned in space
  • Temporal: Involves the intricate patterning & timing of cell proliferation, activation of cell division in some regions, imposition of cell cycle arrest in others
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3
Q

What is symmetric vs asymmetric division

A
  • Symmetric: Yields identical daughter cells that may have different fates if exposed to different external signals
  • Asymmetric: Yields two different types of daughter cells with different fates, asymmetrical localisation of cell fate determinants lead to unequal daughters cells
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4
Q

What are stem cells and stem cell niches

A
  • Undifferentiated cells that may or may not be committed to a particular fate
  • Give rise to more stem cells (self renewal) and generate differentiated progeny
  • Present at all stages of development
  • Maintain stem cell population, increase stem cells or increase differentiating cells
  • Stem cells are formed in niches that provide signals to maintain a population of undifferentiated stem cells but prevent excess proliferation
  • Stem cells regenerate differentiated tissue cells that are damaged, sloughed, or aged
  • Most stem cells are multi-potent and can undergo symmetric or asymmetric self-renewal divisions
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5
Q

What are the types of stem cells

A
  • Totipotent:Ability to give rise to a new individual, given adequate maternal support(fertilised egg)
  • Pluripotent: Ability to give rise to a wide range of somatic cells / tissues
  • Multipotent:Can develop into a few cell types (blood, muscle, nerve, bone)
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6
Q

What are embryonic stem cells

A
  • Embryonic blastocyst inner mass cells are pluripotent
  • Give rise to all differentiated cell types of the organism
  • Pluripotency is controlled by
    state of DNA methylation, chromatin regulators, certain micro-RNAs, and TF (Oct4, Sox2, and Nanog)
  • Can be isolated, cultured and maintained / grown indefinitely to form differentiated cell types
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7
Q

What are somatic stem cells

A
  • Considered to be multipotent, limited capacity to divide (lack telomerase activity)
  • Maintain / regulate homeostasis and repair / regeneration
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8
Q

What are induced pluripotent stem cells (iPS)

A
  • Formed from somatic cells by expression of key TFs
  • Treatment with therapeutic compounds, transplant genetically matched healthy cells
  • Wound healing, blindness, deafness, stroke, bone marrow, spinal cord injury, arthritis, diabetes, cancer
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9
Q

What is the difference between differentially expressed and constitutively expressed genes

A
  • DE: Inducible genes, only turned ‘on’ when needed, regulated
  • CE: Housekeeping genes, always turned ‘on’, continually transcribed
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10
Q

What mediates development

A
  • Transcriptional Regulation: inducible / housekeeping genes

- Cell Signalling: Direct cell-cell contact, soluble factors released by cells (morphogens)

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11
Q

How do gradients of maternally derived regulatory proteins establish polarity of the body axis and control transcriptional activation of zygotic genes

A
  • Mother deposits material (mRNA and protein) that creates asymmetries and set up gradients that broadly define areas (basic body plan map)
  • Gene interaction subdivides these areas (cells differentiate)
  • These identities are remembered, asymmetries at poles, chemical longitude and latitude system
  • Subdivide territory into broad domains and create finer subdivisions and commit them to memory
  • Establish anterior-posterior (segments), dorsal-ventral (germ layers)
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12
Q

What is apoptosis

A
  • Programmed cell death that is a normal and necessary event of normal development
  • Triggered by variety of signals, active, physiological / pathological
  • No inflammation, cell shrinkage
  • Fragmentation / condensation of chromosomes / cytoplasm
  • Organelle disruption
  • Fragmentation of cell, sequential destruction of cell
  • Release membrane bound fragments, phagocytosis
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13
Q

What is necrosis

A
  • Death due to unexpected and accidental cell damage (toxins, radiation, heat, trauma, hypoxia)
  • Swelling, holes appear in the plasma membrane, intracellular materials spill into surrounding environment
  • Causes tissue damage, inflammation, oedema, recruitment of WBC’s
  • Passive, pathological, inflammation, cell / mitochondrial swelling
  • DNA degradation, breakdown of plasma membrane, loss of ion transport, cell lysis / dissipation
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14
Q

How is cell death regulated

A
  • Cells have intrinsic apoptosis pathways for suicide without release of cytosolic contents
  • Crucial for normal development
  • Require trophic factors that bind surface receptors to repress apoptosis
  • Balance between life and death
  • Involves activation of cellular caspase proteases (death signals)
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15
Q

What is the function of apoptosis

A
  • Embryogenesis, morphogenesis, cell selection, immunity
  • Tissue remodelling, maintaining organ size / shape
  • Protection against cancer, p53 / inducing apoptosis
  • Cells lost are replaced by mitosis
  • Occurs in all multicellular organisms
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16
Q

What are caenorhabditis elegans death (CED) proteins

A
  • CED3 and CED4 are required for apoptosis
  • CED9 prevents apoptosis
  • CED3 (caspase) and CED4 (activates caspase activity)
  • CED9 binds with CED4, localising on mitochondrial membrane and prevents
  • Availability of CED4 in the cytoplasm depends on the concentration of CED9
  • Isolate mutants with defective apoptosis and identify the affected gene / protein product
17
Q

What are caspases and how are they activated

A
  • Apoptosis is driven by activity of caspases
  • Cysteine containing aspartate-specific proteases
  • Normally present as inactive zymogens (harmless to cell), zymogen is activated by proteolysis
  • Active caspases then target other proteins for destruction
18
Q

What are the extrinsic and intrinsic activation mechanisms of apoptosis

A
  • Extrinsic: Activated by extracellular ligands binding to cell-surface death receptors (TNF-R / FAS), physiological receptor
  • Intrinsic: Activated by intracellular signals generated when cells are stressed (mitochondria), internal damage
19
Q

What factors induce apoptosis

A
  • Double strand breaks, stalled replication forks, DNA mismatches and nucleotide damage
  • Activate ATM / ATR
  • Activate CHK1 / CHK2 (kinases)
  • Stimulate Cdc25 (stalls CC / DNA synthesis)
  • Activates p53 protein, tumour suppressor, death of cancerous cell by inducing apoptosis, p21
  • Cytotoxic T cells transfer serine proteases that permeabilise membrane
20
Q

What are the consequences of dis-regulation

A
  • Causes a variety of diseases that include cancer, autoimmune diseases and neurodegenerative diseases
  • Diseases involve a failure of apoptosis to eliminate harmful cells (cancer) or the inappropriate activation of apoptosis leading to loss of essential cells
  • Too much results in tissue atrophy, neuro degeneration / thin skin
  • Too little results in hyperplasia, cancer and atherosclerosis
21
Q

What is neuro-degeneration

A
  • Neurons are post-mitotic (cannot replace themselves neuronal stem cell replacement is inefficient)
  • Neuronal death caused by loss of proper connections, loss of proper growth factors and / or damage (oxidative)
  • Neuronal dysfunction or damage results in loss of synapses (reversible) or loss of cell bodies (irreversible)
  • Parkinsons, alzheimers and huntingtons
22
Q

What is cancer

A
  • Receptors Apoptosis eliminates damaged cells (damage to mutations to cancer)
  • Tumour suppressor p53 controls senescence and apoptotic responses to damage
  • Most cancer cells are defective in apoptotic response (damaged, mutant cells survive)
  • High levels of anti-apoptotic proteins or low levels of pro-apoptotic proteins to cancer
23
Q

What is ageing

A
  • Ageing leads to both too much and too little apoptosis (evidence for both)
  • Too much (accumulated oxidative damage) leads to tissue degeneration
  • Too little (defective sensors, signals) leads to dysfunctional cells accumulate, hyperplasia (pre-cancerous lesions)