Diagnostics Flashcards
What are the likely causes of fever, rash and lymphadenopathy with D&V and red patches on lower leg with weight loss?
Viral illness- HIV (BILLY CASE STUDY)
NB. first few symptoms could be glandular fever
What are the likely causes of diarrhoea?
Virus
Bacteria
Parasites
What tests would a GP do if a patient presented with fever, rash, lymphadenopathy and diarrhoea?
FBC, ESR, CRP LFTs U&Es Blood glucose Ix of viral illness Stool culture - bacteriology
What are LFTs?
Liver function tests
What are U&Es?
Urea and electrolytes
What stages are necessary before collecting blood?
Check it’s correct patient
Label CORRECT tube (colour lid is important)
Check if urgent
What is the main difference between different blood collection tubes?
Contain different anticoagulants
What anticoagulants are found in blood collection tubes with the following colours? Red Yellow Purple Grey Blue Green
Red= none Yellow= gel to speed up clotting Purple= potassium EDTA Grey= fluoride oxalate (poison) Blue= citrate Green= heparin
What is the purpose of potassium EDTA in purple topped blood tubes?
Stops blood from clotting and preserves cells
What is the purpose of fluoride oxalate in grey topped blood tubes?
Poison
Red cells will use up glucoses (because they’re living)
So have to poison them to measure glucose)
What blood collection tube is used for U&E?
Serum in yellow/red top
What blood collection tube is used for glucose?
Plasma in grey top
What blood collection tube is used for HBA1c? What is the purpose of HBA1c?
Plasma in purple top
Can measure glucose in the blood over last 3 months
What blood collection tube is used for TFT?
Serum in yellow/red top
What blood collection tube is used for liver function tests?
Yellow/red top
What is the difference between serum and plasma?
Plasma is the blood fluid that carries blood clotting agents
Serum is the water fluid from blood without the clotting factors (appears yellow, at top of centrifuged sample)
If you want to collect serum (in U&E), why do you used a yellow/red topped collecting tube?
Blood clots (no anticoagulant in yellow/red)
Clot can be removed
Leaves serum
What happens if blood is treated EDTA or heparin?
Clotting factors are unused
Blood can’t clot
Blood can be separated into red cells and plasma
In centrifuged blood, describe the layers that would appear
TOP-> BOTTOM
Plasma (yellow)
Lymphocyte and monocyte band (white-ish, opaque)
Density gradient fluid (colourless, clear)
Gel barrier
Erythrocytes and neutrophils
What is found in the blue topped blood tube? What does it do?
Citrate chelates calcium
Need to be careful- need correct quantities= must fill exactly to 4ml
Normally should clot 14 secs
How can glucose from the blood be measured?
Red cells consume glucose (anaerobic glycolysis)
Longer blood is left out-> lower glucose may read
To avoid this, need to treat with fluoride oxalate (poison) which prevents red cells using glucose (so glucose levels stabilise)
GREY-TOPPED TUBE
Why are liver enzymes important to study diagnostically?
Clues from a pattern of enzymes
Extra enzymes leak into blood if liver is damaged-> may cause disease
What liver enzymes (and related substances) are commonly measured?
Alkaline phosphatase
Aspartate amino-transferase (AST)
Alanine amino-transferase (ALT)
Gamma glutamyl transferase (GGT)
Albumin= synthesised in liver Bilirubin= waste product
What hormones are often studied diagnostically in hormone assays?
Thyroxine
TSH
Cortisol
When is a chemical pathologist contacted?
When you want the sample to be rapidly centrifuged out of hours
When you want to measure labile hormones such as insulin
When you urgently need CSF glucose and protein to be measured
If sodium is slightly below the reference range what does this mean?
Often OK
May be due to large volume of water (will affect Na in short term but after passing urine will probably be back to normal)
What could low Na and high K indicated?
Dehydration (e.g. from diarrhoea)
Could also be due to adrenal failure
What are urea and creatine used as a marker of? What does it mean if they are inconsistent?
Renal failure (urea and creatinine concentration rise)
Creatine can cope for a few days, urea struggles
Creatine probably indicates permanent damage to GFR
Could have high urea with normal creatine
Why do you need to be aware of haemolysis in a blood sample? How can you know if blood has been haemolysed?
Red cells lyse and this releases the Ca inside red cells
High K often due to haemolysed sample
So when centrifuged-> haemolysed blood serum appears pink
If the potassium is raised, what does the lab need to check?
If the blood is haemolysed (pink serum)
High K often due to haemolysed sample
How does creatinine show renal function?
Marker of GFR (normal creatinine means normal GFR)
Very little is absorbed or secreted by the tubules
How does urea show renal function?
Levels rise when a patient is dehydrated
GFR stays the same
When studying liver enzymes, what else can be useful to measure?
Measure AST and GGT in a patient with jaundice
What cardiac enzymes are studied in diagnostic tests by the GP?
Troponins (rapid test for abnormal cardiac function) Creatine kinase (CK) Aspartate amino transferase (AST) Lactate Dehydrogenase (LDH)
What are cardiac enzymes? What do they indicate?
During a heart attack, heart muscle is damaged
Enzymes leak into blood in large amounts
Indicate if someone has had a heart attack
What types of laboratory tests are used in diagnostic virology?
Non-specific
Virological
Outline what is seen on a patient with measles virus?
Blotchy wine stain rash
Red all over
Outline what is seen on a patient with shingles virus?
Dermatomal distribution
Red blotches
What features/components of a virus can be detected? (With e.g.s)
Infectious virus (virus isolation and EM)
Protein components (antigens) of the virus (p24 antigen in HIV, surface antigen in HBV etc.)
Genetic components of the virus (DNA or RNA)
Host response (e.g. antibody or cell response)
What are the main diagnostic methods for viruses?
Cell culture
Electron microscopy
Antibody detection (serology - EIA)
Antigen detection (Immunofluorescence - IF enzyme immunoassay - EIA)
Genome detection (PCR)
Quantification of antibody/antigens
Serotyping (e.g. HIV)
Quantification of genomes (viral load)
Genome sequencing (genotyping, antiviral resistance testing)
What are the limitations of lab tests?
Give rise to false negative and false positive results
What is sensitivity?
Test’s ability to correctly id positive samples
What is specificity?
Test’s ability to correctly id negative samples
What is quantification of genomes essential for?
Quantification of genomes-> identifies viral load
Essential for diagnosis and monitoring of HIV, HBV and HCV, and also for CMV and EBV in the immunocompromised
What samples are usually used in virus investigations?
Throat swab, Nasopharyngeal aspirate (NPA), bronchoalveolar lavage (BAL), ET secretions
Stools
Urine
CSF
Blood (clotted or EDTA)
Saliva
When are throat swaps used in viral detection?
Detection of respiratory viruses (IF or EIA) = PCR
When are stools used in viral detection?
For rotavirus, adenovirus and norovirus antigen detection (EIA)
PCR
When is urine used in viral detection?
For BK virus and adenovirus
PCR
When is CSF used in viral detection?
For herpes viruses and enteroviruses
PCR
When is clotted blood used in viral detection?
For serology (ab detection)
When is blood (with EDTA) used in viral detection?
For PCR
Viral load testing
When is saliva used in viral detection?
For serology and/or PCR (e.g. measles)
Compare IgM and IgG (relating to viral diagnostics)
IgM= lower specificity (see more false positives)
Found in acute phase of disease
Duration= 3 months
IgG= higher specificity
Found in acute phase of disease
Duration= lifelong
What can avidity tests distinguish between?
Acute, recurrent or past infection by avidity of marker-specific IgG
For rubella, CMV, HIV, hepatitis viruses, EBV etc.