Definitions Flashcards

1
Q

What are the three types of validity?

A

Construct, face, and predictive

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2
Q

What is construct validity?

A

It assess how good the theoretical rationale for a model is. Does the creation of the model seem similar to the causes of the human condition (is the same gene affected, are they both caused in development etc.)?

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3
Q

What is face validity?

A

How good the similarities with the human condition are. Are the symptoms similar? Are the effects on the body similar?

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4
Q

What is predictive validity?

A

A measure of how accurate the predictions made from the model are. Are the effects of treatments similar? Is the disease progression similar?

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5
Q

Colony forming unit (CFU)

A

A single unit that will go on to form an aggregate of bacteria

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6
Q

A single unit that will go on to form an aggregate of bacteria

A

Colony forming unit (CFU)

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7
Q

What are CFUs used for?

A

To quantify the viable cells in a sample per millilitre

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8
Q

How are CFUs determined?

A

By culturing bacteria on agar plates, and counting the number of colonies produced

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9
Q

Plaque forming unit (PFU)

A

A virion that will go on to form a plaque in culture (often measured/ml)

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10
Q

A virion that will go on to form a plaque in culture (often measured/ml)

A

Plaque forming unit (PFU)

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11
Q

Plaque (in terms of PFUs)

A

A small circular area of cytolysis in a monolayer of susceptible cultured target cells in which a single infectious virion initiated an infectious focus

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12
Q

A small circular area of cytolysis in a monolayer of susceptible cultured target cells in which a single infectious virion initiated an infectious focus

A

Plaque (in terms of PFUs)

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13
Q

Hapten

A

A small molecule that can specifically bind an antibody but can only stimulate production of antibodies when conjugated to a larger carrier molecule

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14
Q

A small molecule that can specifically bind an antibody but can only stimulate production of antibodies when conjugated to a larger carrier molecule

A

Hapten

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15
Q

Cre recombinase

A

A bacteriophage enzyme that catalyses site-specific recombination of DNA between loxP sites, under the control of a specific promoter

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16
Q

A bacteriophage enzyme that catalyses site-specific recombination of DNA between loxP sites, under the control of a specific promoter

A

Cre recombinase

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17
Q

Lytic virus

A

A virus that replicates in the host cell, using host cell machinery, that causes death and lysis of the cell due to direct cytopathic effects

18
Q

A virus that replicates in the host cell, using host cell machinery, that causes death and lysis of the cell due to direct cytopathic effects

A

Lytic virus

19
Q

Latent virus

A

Where a virus is present within a host but is dormant and not replicating

20
Q

Where a virus is present within a host but is dormant and not replicating

A

Latent virus

21
Q

Outside-in signalling

A

Ligand binding event outside the cell which results in the activation of cell surface receptor and triggering of the intracellular response to the detected environmental cue

22
Q

Ligand binding event outside the cell which results in the activation of cell surface receptor and triggering of the intracellular response to the detected environmental cue

A

Outside-in signalling

23
Q

Opsonisation

A

Process by which bacteria and other pathogens are altered by opsins to become more readily phagocytosed

24
Q

Process by which bacteria and other pathogens are altered by opsins to become more readily phagocytosed

A

Opsonisation

25
Next-generation RNA-seq
High throughput transcriptome profiling used to quantitatvely assess the expression of RNA transcripts in a given cell or tissue
26
High throughput transcriptome profiling used to quantitatvely assess the expression of RNA transcripts in a given cell or tissue
Next-generation RNA-seq
27
Inflammatory cascade
A multi-step cascade involving the sequential activation and release of inflammatory mediators from distinct cell types, ultimately resulting in an inflammatory response
28
A multi-step cascade involving the sequential activation and release of inflammatory mediators from distinct cell types, ultimately resulting in an inflammatory response
Inflammatory cascade
29
Viral reservoir
Site of persistent viral infection which the immune response fails to eradicate
30
Site of persistent viral infection which the immune response fails to eradicate
Viral reservoir
31
Hypocomplementaemia
A reduced amount of complement in the blood
32
A reduced amount of complement in the blood
Hypocomplementaemia
33
Transcriptome
The full range of mRNA molecules expressed by an organism or in a specific cell/tissue
34
The full range of mRNA molecules expressed by an organism or in a specific cell/tissue
Transcriptome
35
Proteome
The complete set of proteins expressed by an organism (possibly at a specific time or in a particular cell/tissue)
36
The complete set of proteins expressed by an organism (possibly at a specific time or in a particular cell/tissue)
Proteome
37
Isotype control
An antibody specific for an antigen not found on the cell surface - used as a control in flow cytometry to account for non-specific antibody binding
38
An antibody specific for an antigen not found on the cell surface - used as a control in flow cytometry to account for non-specific antibody binding
Isotype control
39
Paralogues
A pair of genes deriving from the same ancestral gene, now residing at different locations within the same genome
40
A pair of genes deriving from the same ancestral gene, now residing at different locations within the same genome
Paralogues