Databases Flashcards
1
Q
Databases.
A
- Disease mutation databases - e.g. ClinVar, DMUDB, Inherited Peripheral Neuropathies (IPNMDB).
- Phenotype databases - e.g. The Human Phenotype project.
- Popultation variant databases - e.g. dbSNP, dbGaP(PheGenI), dbVar, Universal Browser.
- USCS integrated data mining tool.
2
Q
What does the UCSC browser do?
A
Visual exploration of genomic loi, genes or variants.
Integration of visualised datasets (tracks):
- Mapping and sequencing tools
- Phenotype and disease associations
- Genes and Gene Prediction Tracks
- mRNA and EST Tracks
- Expression
- Regulation
- Comparative Genomics
- Neandertal/Denisova Assembly and Analysis
- Variation and Repeats
Interactive links over features to other datasets.
Upload or download datasets onto the USCS viewer.
