D1.2 Flashcards

Protein Synthesis

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1
Q

Define transcription

A

The synthesis of RNA using a DNA template

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2
Q

List the roles of RNA polymerases in the process of transcription

A

-synthesises RNA from a DNA template
-creates an RNA copy of a segment of DNA

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3
Q

Distinguish between the sense and antisense strands of DNA

A

One strand of DNA is called the sense strand because when you read it in the right direction it provides the code to make a protein. In two-stranded DNA, the sense strand is bonded to an opposite DNA strand which is called the antisense or noncoding strand.

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4
Q

Outline how the stability of information stored in DNA is maintained

A

Cells contain protection systems such as antioxidants that eliminate damaging metabolites before causing extensive damage to the DNA

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5
Q

Define gene expression

A

Gene expression is where the gene is “turned on” and used to synthesise a functional gene product (protein) and ultimately a phenotype.

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6
Q

Outline the major steps of gene expression

A

Transcription and Translation
DNA → mRNA → polypeptide

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7
Q

What is the central dogma of Molecular biology?

A

A theory stating that genetic information only flows in one direction, from DNA to RNA, to protein, or RNA directly to protein

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8
Q

Outline the role of transcription in regulating gene expression

A

Before RNA polymerase can bind to the promoter region for a particular gene transcription factors must first bind to the promoter. Together they form a transcription initiation complex that allows for transcription of a gene.

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9
Q

Define translation

A

The first step in gene expression. Involves copying a genes DNA sequence to make an RNA molecule in order to construct a functional product (protein)

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10
Q

State the location of translation in cells

A

Ribosomes

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11
Q

Outline the roles of mRNA, ribosomes and tRNA in translation.

A

Messenger RNA (mRNA) molecules carry the coding sequences for protein synthesis and are called transcripts; ribosomal RNA (rRNA) molecules form the core of a cell’s ribosomes (the structures in which protein synthesis takes place); and transfer RNA (tRNA) molecules carry amino acids to the ribosomes during protein

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12
Q

Describe the structures of mRNA and tRNA

A

mRNA has a linear structure and carries genetic information copied from DNA. tRNA has an L shaped 3D structure.

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13
Q

State the complementary base pairing utilised in translation

A

tRNA molecules recognise the codons in the mRNA through base pairing between codon and anticodon. The pairing ensures the correct amino acid based on the mRNA sequence is added to the polypeptide chain.

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14
Q

Define codon and anticodon

A

A codon is a three-nucleotide sequence found on mRNA that codes for a certain amino acid during translation. The anticodon is a three-nucleotide sequence found on tRNA that binds to the corresponding mRNA sequence.

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15
Q

Describe the formation of hydrogen bonds between codon and anticodon.

A

The bonds between the anticodon of a tRNA molecule and the complementary codon of mRNA are hydrogen bonds that form while the codon is in the A site. This so happens in the ribosomal unit when a tRNA approaches the mRNA for bonding. The nitrogenous bases present in codon and anticodon bond together by hydrogen bonds.

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16
Q

Explain the reason that a sequence of three nucleotides is required to code for the 20 amino acids commonly utilised by organisms

A

A triplet code could make a genetic code for 64 different combinations (4 X 4 X 4) genetic code and provide plenty of information in the DNA molecule to specify the placement of all 20 amino acids. Universality is ensured because all living things use the same code and have the same bases. The genetic code is degenerate because of the reduced impact of base substitution mutations, as amino acids produced could still be the same.

17
Q

Outline the process of translation elongation,

A
  1. A second tRNA that has a complementary anticodon attaches to the A binding site
  2. Peptide bond will form between the MET and the second A.A.
  3. The tRNA in the P site no longer has an A.A attached and is able to be released.
  4. Ribosomes move in the 5’ to 3’ direction down the mRNA by one codon at a time. First tRNA is released and moves off (Ribosome movement is translocation) A site able to bind another tRNA
18
Q

Outline the process of Eukaryote Translation Initiation

A
  1. tRna carrying methionine attaches to the small ribosomal subunit and together they bind to the 5’ end of the mRNA by recognising the 5’ cap.
  2. They then walk along the mRNA in the 3’ direction stopping when the reach the start codon.
  3. Large ribosomal subunit completes the initiation complex.
19
Q

Explain codon recognition, bond formation and translocation

A

Codon recognition: The ribosome moves along the mRNA molecule and reads the next codon in the mRNA sequence. A complementary aminoacyl-tRNA molecule carrying the corresponding amino acid binds to the codon, with the help of elongation factors.

Peptide bond formation: The ribosome catalyzes the formation of a peptide bond between the amino acid on the tRNA in the A-site and the growing polypeptide chain on the tRNA in the P-site. This forms a dipeptide and releases the tRNA from the P-site.

Translocation: The ribosome then moves one codon down the mRNA molecule, shifting the tRNA in the A-site to the P-site, and moving the empty tRNA from the P-site to the E-site, where it is released from the ribosome. The A-site is now vacant and ready to accept a new aminoacyl-tRNA molecule.

20
Q
A
21
Q

Outline the process of termination in translation

A
  1. Elongation continues until a STOP codon is reached and a releasing factor (enzyme) arrives at a binding site to separate the polypeptide chain.
  2. Free polypeptide chain is released.
  3. Assembly complex (ribosome, tRNA, mRNA) disassembles itself
22
Q

Where does Post Translational Modificatio take place

A

Occurs in the endoplasmic reticulum and Golgi apparatus to form the mature protein product

23
Q

Outline the function of proteasomes in the recycling of amino acids

A

Eukaryotic cells mark proteins with a chemical called ubiquitin signally its destrucition using a proteasome which degrades unneeded or defective proteins to recycle the components for the eventual assembly of new proteins.

24
Q

Define alternative splicing

A

a cellular process in which exons from the same gene are joined in different combinations leading to different mRNA transcripts

25
Q

Outline the process of initiation in transcription

A

RNA polymerase binds to the promoter site which identifies the start of a gene, which strand needs to be copied and the direction it needs to be copied in

26
Q

Outline the process of elongation in transcription

A

RNA polymerase moves along the antisense strand of DNA using free nucleoside triphosphates to make a strand of mRNA.

27
Q

Outline the process of termination in transcription

A

RNA polymerase reaches the stop sequence in the gene
DNA zips back as polymerase passes by it heals the DNA strand
Newly synthesised mRNA separates from template DNA