Crystal Arthropathies - Gout, CPPD (Rheumatology 3 - Week 5) Flashcards
How many rings do pyrimidine bases have?
1
Examples: C, T (DNA only), U (RNA only)
How many rings do purine bases have?
2
Examples: A, G
How many carbons make up the sugar component of DNA and RNA?
5
Note: for RNA, it’s a 5-C ribose and for DNA it’s a 5-C deoxyribose
What do we call a sugar and base together?
nucleoside
Example: adenosine (adenine + ribose sugar)
What do we call a nucleoside (base + sugar) and 1-3 phosphates?
nucleotide
Example: adenosine triphosphate (ATP)
Note: nucleotides are the building blocks used in DNA and RNA synthesis
What is the nucleoside name for cytosine?
cytidine
Note: notice the “ine” ending of the bases changing to “dine” endings for pyramidine nucleosides
What is the nucleoside name for thymine?
thymidine
Note: notice the “ine” ending of the bases changing to “dine” endings for pyramidine nucleosides
What is the nucleoside name for uracil?
uridine
What is the nucleoside name for adenine?
adenosine
Note: notice the “ine” ending of the bases changing to “sine” endings for purine nucleosides
What is the nucleoside name for guanine?
guanosine
Note: notice the “ine” ending of the bases changing to “sine” endings for purine nucleosides
What is the nucleoside name for xanthine?
xanthosine
What is the nucleoside name for hypoxanthine?
inosine
What are the two pathways for purine nucleotide biosynthesis?
1) de novo pathway
2) salvage pathway
Describe the de novo pathway for purine nucleotide biosynthesis
“Adding things onto an activated ribose (PRPP) to make a completely new base”
After we have that ribose and make that base, we have a nucleotide, because the phosphates are already attached (on the activated ribose)
Describe the salvage pathway for purine nucleotide biosynthesis
Again, you have the activated ribose with the phosphates (PRPP), but you also already have a pre-formed base in your body (can be from diet or products from cell turnover)
We put the PRPP and base together, and we get a nucleotide
What molecule is used to transfer an N (nitrogen) to PRPP in de novo synthesis?
glutamine
Recall: “amine” = nitrogen containing
True or False: Inosine monophosphate (IMP) can be used to make AMP or GMP
True
How do ATP and GTP levels influence GMP and AMP synthesis?
- when ATP levels are high, you make GMP (ATP makes GMP)
- when GTP levels are high, you make AMP (GTP makes AMP)
Note: we can refer to this as reciprocal control
What is a disadvantage of the de novo pathway?
It uses a lot of energy because we’re making bases from scratch.
Therefore, helpful that we also have the salvage pathway.
What are two important enzymes for the salvage pathway?
1) hypoxanthine-guanine phosphoribosyl transferase (HGPRT)
2) adenine phosphoribosyltransferase (APRT)
What reaction does HGPRT catalyze?
addition of phopsphoribose (sugar + P) from PRPP to:
- hypoxanthine to make IMP
- guanine to make GMP
What reaction does APRT catalyze?
addition of phosphoribose (sugar + P) from PRPP to:
- adenine to make AMP
What is the pathway used for pyrimidine nucleotide synthesis?
1) de novo pathway
Remember: “de novo” means making from scratch (completely new)
Describe the de no pathway for pyrimidine nucleotide synthesis
- make an intermediate pyrimidine ring first
- then attaching a ribose-5-P (via PRPP)
Note: this is opposite to purines, where the ring is constructed directly onto the ribose-5-P
What are the substrates used for the ring in the de novo pathway in pyrimidine nucleotide biosynthesis?
1) carbamoyl phosphate
2) aspartate
Note: carbamoyl phosphate is made from glutamine + ATP + HCO3-
How do we make CTP?
- phosphorylate UMP to make UTP
- UTP is aminated to CTP (N supplied by glutamine)
How do we make dTMP?
- phosphorylate UMP to make UDP
- UDP converted to dUMP
- dUMP is methylated to dTMP (via folate coenzyme/B9 coenzyme)
recall: folate = vitamin B9
True or False: IMP, AMP, and GMP are examples of monophosphates
True
What do nucleotidases do?
Remove phosphates from nucleotides to release nucleosides
Recall: nucleoside = sugar + base
What does cytosine get degraded into?
cytosine –> uracil –> alanine
What does thymine get degraded into?
thymine –> aminoisobutyrate
What do purines (guanine and adenine) get degraded into?
Note: purine degradation is more relevant to today’s lecture on gout (compared to pyrimidine degradation)
guanine/adenine –> xanthine –> uric acid
Note: uric acid is eventually excreted in urine, and elevated levels (hyperuricemia) can lead to GOUT