Cross - Infections Flashcards
What is pneumonia? When do people get it?
- Lung parenchyma infection
- Systemic resistance lowered: chronic disease, immuno def, tx w/immuno-suppressants, leukopenia
- Impaired local defense mechs: loss of cough reflex suppression, injury to mucociliary apparatus (smoking), accumulation of secretions (CF), interference of phagocytic action of alveolar macros (tobacco, alcohol), pulmonary edema
Why the respiratory tract?
- Millions of microorgs (bacteria, viruses, fungi) inhaled daily
- Evade local defenses via several different mechanisms
1. Toxins that impair ciliary activity
2. Capsules or live intracellularly and evade killing
3. Attach to and enter epi cells through various mechanisms
What is CAP? Characterize it.
- Community-acquired pneumonia: potentially serious, w/considerable morbidity/mortality
- Rate INC w/INC age and comorbidities
- Strep pneumo most comm cause of pneum worldwide
- Etiologic agent usually NOT identified; pts tx empirically
- Often follows URT viral infection
- Bacteria invade lung parenchyma -> alveoli filled with inflammatory exudate -> consolidation of the pulm tissue
What is HAP? What are some risk factors?
- Hospital-acquired pneumonia: 48+ hrs post-hosp admission (NOT incubating at admission time)
- Leading cause of death among hospital-acquired infections (mortality from 20-50%)
- Highest risk for HAP is in pts on mechanical ventilation
- Other risk factors: severe underlying illness, immuno-suppression, prolonged AB tx, invasive devices like IV catheters
What is HCAP?
- Healthcare-assoc pneumonia:
1. Hospitalization of at least 2 days in prior 90, or
2. Has been receiving IV therapy, chemotherapy or wound care in the last 30 days, or
3. Patient is resident of nursing home or long term care facility, or
4. He/she attends hemodialysis clinic or hospital
What are some of the physical exam findings in pneumonia (4)?
- Crackles (rales): scratchy sound via accumulation of fluid/white cells/bacteria in alveolar and interstitial spaces
- Bronchial breath sounds: dense consolidation of lung parenchyma = transmission of large airway noises to periphery
- Dullness to percussion: normal, air-filled tissue displaced by fluid (eg. pleural effusion) or infiltrated with white cells and bacteria
- INC tactile fremitus: consolidation alters transmission of air and sound -> fremitus will become more pronounced
How might you diagnose pneumonia?
- CXR
- Gram stain/cultures
- Some orgs have special tests
What are some complications of pneumonia?
- Tissue destruction & necrosis, which can lead to ABSCESS
- Spread of infection into the pleural cavity causing an EMPYEMA (collection of pus in cavity)
- Bacteremic dissemination
What is atypical pneumonia? What 3 orgs should you think about?
- Symptoms and CXR atypical when compared with S. pneumo
- Organism can’t be isolated on routine media
1. Mycoplasma pneumoniae
2. Chlamydophila (chlamydia) pneumoniae
3. Legionella pneumophila
What are some of the staining/detection methods for strep pneumo?
- Gram positive, lancet shaped (oval w/pointed ends) encapsulated diplococcus
- Alpha hemolysis on blood agar plate -> GREEN RING around colonies
- Optochin sensitive: distinguishes it from strep viridans
- Catalase negative: distinguishes from S. aureus (catalase catalyzes decomposition of hydrogen peroxide to water and oxygen)
- Quellung reaction: type-specific antiserum causes capsules to swell (attached image)
What are the virulence factors of S. pneumo? Is it part of the normal flora?
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Polysaccharide capsule: interferes w/phagocytosis and promotes invasiveness
1. No virulence without the capsule -> more than 85 antigenically distinct types - IgA protease: enhances org’s ability to colonize URT
- Lipoteichoic acid: activates complement/induces cytokine production
- 5-50% of the pop colonized w/S pneumo in oropharynx, but not communicable -> healthy people typically resistant to infection
What are the risk factors for S. pneumo?
- Alcohol/drug intoxication (causes cerebral impairment, depressing cough reflex, INC aspiration of secretions)
- Abnormality of the respiratory tract (viral infection, bronchial obstruction, respiratory tract injury)
- Abnormal circulatory dynamics (pulmonary congestion, heart failure)
- Splenectomy
- Sickle cell disease
- HIV infection
What are the clinical manifestations of S. pneumo?
- SUDDEN ONSET:
1. Fever
2. Shaking chills
3. Cough productive of rusty sputum
4. Shortness of breath
5. Pleuritic pain
How can you diagnose S. pneumo?
- Gram stain and culture (sputum)
- Blood cultures positive in 15-25%
- Rapid urinary antigen test
- CXR will show LOBAR CONSOLIDATION
How can you treat S. pneumo?
- Antibiotics:
1. Penicillin previously drug of choice, but significant resistance has emerged
1. Still drug of choice IF susceptible - For severe infections: Vancomycin empirically until susceptibilities known
- Ceftriaxone if susceptible
- Flouroquinolones (-floxacins) and Azithromycin (macrolide) also options for less severe disease
What are the 2 S. pneumo vaccines?
- High mortality in elderly, immunocompromised, or debilitated
- Polyvalent (23-type) polysaccharide vax (PPSV23, aka pneumovax) provides 5 yrs protection
1. Material from 23 pneumo types that have caused 85-90% of disease
2. Recommended for all people ≥65 years of age and peeps aged 19 - 64 years at INC risk for pneumo and/or serious complications of pneumo infection -
PCV13 (Prevnar)
1. Capsular polysaccharides from 13 most common types that cause disease
2. Recommended for children and infants - Since 2012 both vaccines have been recommended sequentially for high risk adults
What other diseases are caused by S. pneumo?
- Meningitis
- Otitis media
- Sinusitis
What is S. aureus? Characterize it.
- Gram positive cocci in clusters; part of normal flora
- Coage and catalase positive
- Causes many diseases; tons of virulence factors
- Important cause of post-influenza pneumonia
- Causes both CAP and HAP/HCAP (one of most common causes of HAP/HCAP)
- AB resistance common -> must get susceptibilities
- Complications incl. necrotizing PNA and lung abscess
What does the pneumo caused by S. aureus typically look like?
- Typically causes a brochopneumonia (more diffuse findings on CXR)
1. Acute inflammatory infiltrates from bronchioles into adjacent alveoli
2. Patchy distribution usually involving > 1 lobe
What is pseudomonas aeruginosa?
- Aerobic gram-negative bacilli
1. Does not ferment lactose
2. Oxidase positive
3. Produces pyocyanin, giving it blue-green pigment (see attached image)
4. Grape-like odor on agar plate
5. Water source - One of most common causes of HCAP/HAP/VAP and pneumonia in cystic fibrosis patients
What are the virulence factors for P. aeruginosa? What do they cause?
- Endotoxin: elicits variety of inflam responses, causing fever and shock
- Exotoxin A: enzyme blocks protein syn by inactivating elongation factor EF-2 by ADP ribosylation, resulting in shutdown of protein synthesis
-
Others: elastase, leucocidin, hemolysins, proteases
1. Action of virulence factors results in extensive vasculitis with thrombosis and hemorrhage with necrosis
How do you treat P. aeruginosa?
- Highly resistant organism
- Must get AB susceptibilities and know antibiogram of the institution
- Antibiotics:
1. Cefepime (4th generation cephalosporin)
2. Meropenem or Imipenem (carbapenem)
3. Ciprofloxacin (flouroquinolone)
4. Pipericillin/Tazobactam (extended spectrum penicillin)
5. Gentamicin (aminoglycoside)
What other diseases does P. aeruginosa cause?
- Wound infections in burn victims
- Sepsis in hospitalized patients
- External otitis (esp. in diabetics)
- UTI
- Hot tub folliculitis (inflammation of hair follicles
What is Klebsiella pneumo?
- Gram (-) bacillus; intestinal flora
- Ferments lactose, indole (-), incapable of growth at 10o C
- Capsule is important virulence factor
- Important cause of pneumo on alcoholics, malnourished
- One of most freq causes of gram (-) bacterial PNA
- Produces very mucoid colonies cause by polysaccharide capsules -> red “currant jelly” sputum
What kind of pneumo does Klebsiella cause? What are some complications?
- Both lobar AND bronchopneumonia
- Complications: abscess and necrotizing pneumo
- AB resistance is common
What is Haemophilus influenzae?
- Small, gram (-) coccobacillary rod; pleomorphic (can alter shape/size according to the environment)
- Non-motile, facultative anaerobe
- Culture on chocolate agar requires factors V (NAD+) and X (hematin) for growth
- 6 serotypes (encapsulated and non-encapsulated)
1. Capsule is one of the virulence factors
2. Most invasive disease capsular type B -> vaccine incorporates capsular polysaccharide b; antibodies against capsule are protective
3. Disease due to HIB has DEC significantly, while diseases due to nontypeable forms are increasing
What diseases does H. influenzae cause? What is the tx?
-
Diseases:
1. Pneumonia: following viral resp infection in kids, can be severe w/high mortality rate -> pulm consolidation can be lobar OR more diffuse
2. Otitis media
3. Epiglottitis
4. Meningitis
5. Common bac cause of acute COPD exacerbations -
Treatment:
1. Amoxicillin (beta-lactam) for mild infection
2. Ceftriaxone for more serious infection
What is Moraxella catarrhalis?
- Gram (-) coccobacillary rods
- 2nd most common cause of acute COPD exacerbations
- Increasingly recognized as cause of bac pneumo, esp in elderly
- Also causes sinusitis and otitis media (common cause)
What is Acinetobacter baumanii?
- Gram-negative coccabacillary rods
- Opportunistic pathogen
- Commonly found in water and soil, and can be part of normal flora
- Hospital setting -> many times associated w/respiratory equipment
- Diseases: VAP/HAP, sepsis, line infections, UTIs
- Highly resistant to many antibiotics
What is Mycoplasma pneumo? Describe its pathogenesis and clinical manifestations?
- No cell wall, but bac membrane has sterols for stability
- Classical cause of atypical “walking pneumo” (most common type of atypical PNA)
1. Most common cause of pneumo in school-aged children; also common in prison and military recruits - Pathogenesis: adhesin binds to ciliated epithelial cells and causes reduced ciliary clearance
-
Clinical manifestations: insidious onset of dry cough, headache, low-grade fever, myalgias, sore throat
1. CXR looks worse than the patient usually
How do you diagnose M. pneumo?
- Serology
- PCR on respiratory secretions/nasopharynx
-
Cold agglutinins: IgM autoantibodies against type O RBCs that agglutinate the cells at 4 degrees C but not 37 degrees C)
1. Half of patients with Mycoplasma infection will be positive - Will grow on Eaton agar (not done routinely)
How do you treat M. pneumo? What are its extrapulmonary manifestations?
-
Treatment:
1. Macrolide (e.g., azithromycin), doxycycline, or floroquinolone (e.g., levofloxacin) -
Extrapulmonary manifestations:
1. Hemolysis (rupture/destruction of RBC’s)
2. Rash
3. CNS involvement (encephalitis most common)
4. Cardiac involvement (rhythm disturbances, CHF, myocarditis, conduction abnormalities)
What is Chlamydia pneumo?
- Obligate IC organism
- 2nd most common cause of atypical pneumo
- Clinically very similar to Mycoplasma pneumo (affects older adults)
- No good diagnostic test
- Treatment: doxycycline (tetracycline AB)
1. Tetracycline AB’s are protein syn INH, inhibiting the binding of aminoacyl-tRNA to the mRNA-ribosome complex -> bind to the 30S ribosomal subunit in the mRNA translation complex
What is Legionella pneumo? What is its pathogenesis?
- Gram negative rod; facultative intracellular
-
Pathogenesis:
1. Avoid phagolysosome fusion and replicate within alveolar macrophages -> DEC clearance
2. Has many other virulence factors, most important probably endotoxin - Aerosol transmission from environmental source habitat (air conditioning systems etc.)
- Older population, smokers, alcoholics and those with comorbidities are affected
What are the clinical features of L. pneumo?
-
Legionnaire’s disease: severe pneumonia with unique symptoms
1. Dry cough
2. Fever
3. Diarrhea
4. Confusion - Pontiac fever: mild flu-like syndrome
What are the diagnostic features of L. pneumo?
- CXR can show consolidation, diffuse interstitial infiltrates, pleural effusions, etc.
- Gram stain will show macros and neutros, but no orgs; must use silver stain
- Grows on charcoal yeast extract culture with iron and cysteine
- Labs will show hyponatremia
- Urine antigen used for diagnosis clinically
What is the treatment for L. pneumo?
- Macrolide (azithromycin) OR
- Flouroquinolone (levofloxacin)
What is aspiration pneumo?
- Caused by aspiration of gastric contents
- Debilitated or unconscious pts, or those w/repeated vomiting
- Resultant pneumo is bac from GI flora & chemical due to gastric acid irritation
- Can be severe
- Not everyone who aspirates gets pneumo
- Frequent cause of pneumonia in alcoholics
What kind of pneumonia do viruses cause? What else do they cause?
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Atypical pneumonia: patchy inflammatory lung changes, largely confined to alveolar septa and pulm interstitium
1. Absence of physical findings of consolidation
2. Only moderate elevation of WBC count
3. Path: alveolar walls infiltrated with mononuclear cells (lymphs, some plasma cells) - Nearly all viruses that cause pneumonia can cause URTIs (“common colds”) as well
1. 40-60% of “colds” can be linked to specific viruses.
2. Risk factors for extension of infection: extremes of age, malnutrition, alcoholism, underlying debilitating illnesses
What are the general mechs of viral pneumo?
- Viruses have tropisms allowing for attachment to resp epithelium
- Viral replication causes cell death and inflammation
- Resulting damage and impairment of local defenses (mucociliary clearance) can predispose to bacterial superinfections
What is the epi of influenza?
- Most common cause of respiratory tract infections that results in physician visits and hospitalizations in the U.S.
- 35-50 million cases in the U.S. annually and 36,000 deaths each year
1. Mortality highest in elderly and children under 2 years old (different in 2009 H1N1)
Describe the family and structure of influenza.
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Orthomyxovirus family
1. Helical, enveloped single stranded, negative-sense linear RNA virus consisting of 8 segments -
Structure -> envelope contains 3 proteins:
1. Hemagglutinin binds to cell surface receptor and promotes viral entry -> 3 major subtypes (H1-H3)
2. Neuraminidase cleaves neuraminic acid to release progeny virus from infected cell; degrades protective layer of mucus in resp tract (2 major subtypes: N1, N2)
3. M2 ion channel essential for virus infectivity
What are the differences between influenza A and B?
-
Influenza A: major cause of epidemics (community) and pandemics (worldwide)
1. Capable of infecting animals
2. Classified by subtypes -> single subtype predominates throughout the world at any given time -
Influenza B: causes sporadic outbreaks every year
1. Can be serious, but only infects humans
2. Not classified by subtypes
What is the difference between antigenic drift and shift?
-
Antigenic drift: spontaneous mutations in viral genome as it replicates (causes epidemics)
1. New viral strains are different enough to elude (in part) anti-influenza Ab’s produced in pop in response to prior exposures to other flu strains -
Antigenic shift: occur when HA and NA genes replaced via reassortment w/animal flu viruses
1. Creates an antigenically “new” virus that has the potential to cause pandemics
2. All individuals are susceptible
What is an epidemic? Pandemic?
- Pandemic: spread through human populations across a large region (globally); for instance multiple continents, or even worldwide
- Epidemic: widespread occurrence of an infectious disease in a community at a particular time
- NOTE: influenza causes both epidemics and pandemics
What are the transmission and pathogenesis of influenza?
- Transmission: airborne respiratory droplets
-
Pathogenesis: virus is inhaled
1. Neuraminidase degrades protective mucus layer and virus gains access to cells
2. Necrosis of superficial layers of the respiratory epi
3. Cytokines released -> characteristic MYALGIAS
What are the clinical manifestations of influenza?
- 24-48 hour incubation period
-
Sudden onset:
1. Fevers (can be high)/chills
2. Myalgias
3. Sore throat
4. Dry cough
5. Headache
6. Vomiting/diarrhea rare (except in children)
What is Reye’s syndrome?
- Encephalopathy and liver degeneration
- Rare, life-threatening complication in children following some viral infections, esp. influenza B and chickenpox
- Aspirin given to reduce fever in viral infections has been implicated in the pathogenesis of Reye’s syndrome
How would you diagnose and treat influenza?
-
Diagnosis:
1. Clinical
2. RT-PCR: most sensitive, specific for dx flu infection, yields relatively rapid results, and differentiates b/t flu types and subtypes
3. Direct fluorescent antibody
4. Rapid viral antigen test
5. Viral culture (not usually used) - Treatment: Oseltamivir or Zanamivir