Conditions Flashcards
Carney Complex (gene & inheritance)
PRKAR1A
Dominant
Carney Complex(tumors)
Tumors:
- Myxomas (breast myxomatosis, osteochdromyoxma, cardiac myxoma)
- Thyroid carcinoma
- Skin tags, lipomas
- Psammomatous melanotic schwannomas
- Sertoli cell tumors
- Pituitary & Breast adenomas
**Must always histologically confirm myxoma (connective tissue tumor)
Carney Complex(non-tumor features)
Pale brown to black lentigines; increase in number and appear anywhere on the body including the face, the lips, and mucosa around puberty
Epithelioid-type blue nevi (small bluish domed papules with a smooth surface), combined nevi, café au lait macules, and depigmented lesions
HBOC(genes & inheritance)
BRCA1 (17q21) & BRCA2 (13q21.3)
Dominant
Tumor suppressor genes
HBOC (tumors)
- Breast (40-80% lifetime risk, higher in BRCA1)
- Ovarian (11-40% lifetime risk, higher in BRCA1)
- Male Breast Cancer
- Prostate cancer (higher in BRCA2)
- Pancreatic cancer (higher in BRCA2)
- Melanoma (BRCA2 only)
HBOC (management)
- Breast awareness @ 18
- Clinical breast exam every 6-12 mos @ 25 (female) OR @ 35 (male)
- Annual MRI @ 25-Annual Mammogram @ 30
- Option of prophylactic mastectomy
- Recommend BSO @ 35-40
- Prostate exams starting @ 40
**Gail=Tamoxifen (5 yr risk >1.6%)
**Claus=MR
FAP(gene & inheritance)
Familial Adenomatous Polyposis
APC gene (5q21-22)
Dominant
15-30% de novo rate
FAP(major features (excluding tumors) & testing criteria)
Major features:
- 100+ adenomatous colon polyps
- Average age of onset for 1st polyps : 16yrs
Testing criteria:
- 10+ polyps
- Fam hx FAP
- Fam hx adenomas & FAP-related extra-colonic findings
FAP(associated tumors & clinical features)
- Colon (~100% lifetime risk)
- Small bowel
- Pancreatic
- Bile duct
- Stomach
- Thyroid (papillary)
- CNS
- Liver (rarely hepatoblastoma in children)
- Jaw osteoma
- Abdominal desmoid tumors
Clinical Features:
- absent/supernumerary/malformed teeth
- CHRPE
FAP(treatment)
Colectomy is recommended after adenomas emerge
in approximately one third of individuals the colonic polyps are limited enough in number that surveillance with periodic colonoscopic polypectomy is sufficient
AFAP
Attenuated Familial Adenomatous Polyposis
10-99 adenomatous colon polypsTumors typicaly more proximal in colon
**I130K polymorphism found in 6-7% of affected individuals
Gardner Syndrome (FAP Variant)
FAP with osteomas and soft tissue tumors (fibromas, desmoid, epidermoid)
Turcot Syndrome(FAP/HNPCC Variant)
FAP with CNS tumors, specifically medulloblastoma
**Caused by monoallelic MMR (1/3) or APC (2/3) mutation
HNPCC/Lynch Syndrome(genes & inheritance)
- Hereditary Non-Polyposis Colorectal Cancer
- MLH1, PMS2, MSH2, MSH6, EPCAM
- MLH1 & MSH2 most common | MSH6 rare
- Most commonly caused by MLH1 SOMATIC mutations
***BRAF (V600E) somatic mutation =sporadic, causes MLH1 hypermethylation
-Dominant-Base pair su
HNPCC(associated tumors)
Major associated tumors:
- Colorectal (R ascending)
- 80% lifetime risk
***Adenomatous tumors
- Uterine-Small bowel
- Ureter
- Renal pelvis
- Ovarian
Other associated tumors:
- Stomach**
- Gallbladder
- Brain
Amsterdam I Criteria
- 3 individuals with CRC (1 must be FDR of other 2)
- 2 generations
- 1 diagnosed <50yrs
**FAP excluded
Amsterdam II Criteria
**Includes Lynch-related tumors (CRC, uterine, small bowel, ureter & renal pelvis)
- 3 individuals with Lynch-related tumors(1 must be FDR of other 2)
- 2 generations
- 1 diagnosed <50yrs**FAP excluded
**50% of true Lynch families meet criteria
MLH1 & PMS2(tumor testing)
MMR genes
- HNPCC/Lynch
**Most tumors are MSI-high (must rule out BRAF mutation)
- Absence of both: MLH1 mutation OR MLH1 promotor hypermethylation (R/O through BRAF testing)
- Absence of PMS2: PMS2 mutation or MLH1 mutation
MSH2 & MSH6(tumor testing)
MMR genes
- HNPCC/Lynch
- Absence of both: MSH2 mutation OR EPCAM mutation
- Absence of MSH6: MSH6 mutation
HNPCC (treatment)
- If CRC present, full colectomy with ileorectal anastomosis indicated
- Colonoscopy every 1-2 years starting @ 25-Consider annual pap smear, transvaginal US, endometrial biopsy, and CA-125 level
Bethesda Criteria
- CRC diagnosed <50yrs-Personal history of 2 Lynch-related cancer diagnoses
- CRC that is MSI-high dx <60yrs
- Personal history of CRC & Fam hx (FDR) with Lynch cancer dx <50yrs
- Personal history CRC with 2 FDR or SDR wit Lynch cancer at any age
**Has a 75%
HNPCC(testing criteria)
- Meets Amsterdam II criteria
- Meets Bethesda criteria
- Diagnosed with Uterine cancer <50yrs
- Known Lynch syndrome in family
- >=5% risk of Lynch on prediction model
MUTYH-associated polyposis(gene & inheritance)
MUTYH Recessive
-Base excision repair genes
**Mutations lead to G:C or T:A transversions can lead to Lynch-like features/cancer risks
MUTYH(associated features)
- Characterized by an increased risk for adenomatous colon polyps and CRC (80%)
- High amount of phenotypic heterogeneity (10-100 adenomas, 100+ adenomas, APC normal)
MUTYH(referral indication)
Any individual with a personal history of OR FDR with:
- 10+ cumulative adenomatous colon polyps with or without CRC
- MMR proficient CRC diagnosed
Li-Fraumeni(gene & inheritance)
TP53 (17p13) & CHEK2 (22q12.1)
Dominant
- TP53 protects against cancer but causes premature aging; policing of cells is too strict - too many cells enter apoptosis; Upregulation occurs when mutation present
- ~20% de novo
- Multiple primary tumors with the first primary often occurring before age 30.
~100% lifetime risk for cancer.
**TP53 mutation analysis for female breast cancer <35 years
Li-Fraumeni(associated tumors)
Sarcomas
Breast cancer
Brain tumpors (astrocytomas, glioblastomas, medulloblastomas, choroid plexus carcinomas)
Adrenocortical carcinomas
Other: GI cancers, GU cancers, leukemias and lymphomas, lung cancer, neuroblastoma, skin cancers, thyroid cancers
Li-Fraumeni(diagnostic criteria)
All of the following:
- Proband with sarcoma <45yrs
- FDR with cancer <45
- AND FDR/SDR with any cancer <45 or sarcoma at any age
**Most important to screen for childhood brain cancers & breast cancer screening
Chompret Criteria(Li-Fraumeni)
- Proband with tumor in LFS-spectum <46yrs AND at least 1 FDR/SDR with LFS tumor (except breast if proband also has breast) before age 56 or with multiple tumors; OR
- Proband with multiple tumors (except multiple breast tumors) two of which belong to LFS tu
MEN1(gene & inheritance)
MEN1 (11q13)Dominant
**Sequencing detects most cases
**MEN1 - tumor suppressor gene
MEN1(associated tumors)
Parathyroid (100% by age 50)
Anterior pituitary (30-40%)
Well-differentiated endocrine (gastrinoma, insulinoma, glucagonoma, VIPoma)
Carcinoid
Adrenocortical (pheos are rare)
MEN1(growths)
Facial angiofibromas
Collagenomas
Lipomas
Cafe a lait macules
MEN1(diagnostic criteria)
Tumor in 2 of:
-parathyroid, enteropancreatic endocrine tissue, OR anterior pituitary; ORTumor in one and FDR with MEN1
MEN1(treatment)
- Head MRI @ 5yrs
- Abdominal CT or MRI @ 20yrs
- Calcium serum concentrations @ 8yrs
- Gastrin @ 20yrs
- Pancreatic polypeptide @ 10yrs
- Prolactin @ 5yrs
MEN2(gene & inheritance)
RET (10q11.2)Dominant
**PROTO-ONCOGENE
Sequencing detects majority of MEN2 cases (MEN2A exon 10&11; MEN2B exon 16)
MEN2A(clinical features)
- Medullary thyroid cancer (<35 yrs)
- Pheochromocytoma (50%)
- Hyperparathyroidism
- Parathyroid adenomas
- May present with cutaneous lichen amyloidosis
**Prophylactic thyroidectomy
**GoF mutations
MEN2B(clinical features)
- Medullary thyroid cancer in childhood (prophylactic thyroidectomy BEFORE age 1)
- Pheochromocytoma (50%)
- Marfanoid habitus, kyphoscoliosis
- Hooded eyes, prominent lips
- Growths: mucosal neuromas, diffuse ganglioneuromatosis of the digestive tract
Familial Medullary Thyroid Cancer
Medullary thyroid cancer without other symptoms of MEN2A/MEN2B
*No pheo or parathyroid adenoma/hyperplasia
**GoF mutations
Hirschprung’s disease
**LoF mutations (chromosome 10)
Megacolon
Constipation
Neurofibromatosis Type 2(gene & inheritance)
NF2 (22q12.2)
- tumor suppressor
Dominant
50% de novo rate; can have somatic mosaicism
**sequencing detects 75%; del/dup detects 10-15%
Diagnostic criteria:
- bilateral vestibular schwannomas
- first degree relative
- unilateral 8 nerve mass OR two of the following:
+++meningioma, glioma, schwannoma, juvenile posterior subcapsular lens opacity-unilateral vestibular schwannoma AND 2 of the following:
+++meningioma, schwannoma, glioma, NF, posterior subcapsular lens opacity-multiple meningiomas AND unilateral vestibular schwannoma OR two of the following:
+++schwannoma, glioma, NF, cataract
NF2(features)
-Bilateral vestibular schwannomas by 30yrs
+conductive hearing loss
+tinnitus
+balance dysfunction (death by drowning key finding)
+decreased visual acuity
-Schwannomas elsewhere in body
+nerve sheath tumors
- Ependymomas
- Meningiomas
- Cafe-au-lait macule
Tuberous Sclerosis Complex(gene & inheritance)
TSC1, TSC2
Dominant
**Lots of funky growths
**TSC2/PCKD contiguous gene deletion, features of TSC and AD PKD
**sequencing
TSC(major features)
Angiofibromas (>3) or fibrous cephalic plaqu
Cardiac rhabdomyoma
Cortical dysplasias, including tubers and cerebral white matter migration lines
Hypomelanotic macules
Lymphangioleiomyomatosis
Multiple retinal nodular hamartomas
Renal angiomyolipomas
Shagreen patch
Subependymal nodules
Ungual fibromas
TSC (minor features)
- “Confetti” hypopigmented skin lesions
- Dental enamel pits
- Intraoral fibromas
- Multiple renal cysts
- Nonrenal hamartomas
- Retinal achromic patch
Von Hippel-Lindau Disease(gene & inheritance)
VHL (3p25)Dominant
**sequencing followed by deletion analysis (by southern blot) gives very high detection rate
Von Hippel-Lindau Disease (associated tumors)
Hemangioblastomas (brain,spinal, retinal)
Multiple and bilateral renal cysts
Renal cell carcinoma
Pheochromocytomas
Paraganglioma
Pancreatic lesions (cysts, neuroendocrine tumors)
Endolymphatic sac tumors
Epididymal and broad ligament cystadenomas
PTEN Hamartoma Tumor Syndrome(gene & associated syndromes)
PTEN
**start with sequencing
Variant syndromes:
- Cowden
- Bannayan-Riley-Ruvalcaba
- Proteus
- Proteus-like
PTEN(associated tumors)
- 2 or more hamartomas in the colon
- Breast cancer
- Uterine cancer
- FOLLICULAR thyroid cancer
- Colon cancer
- Renal cell carcinoma
- Uterine leiomyomas (fibroids)
- Mucocutaneous lesions +trichilemmomas +acral keratoses +papillomatous lesions +lipomas +fibromas
PTEN (other features)
Macrocephaly, trichilemmomas, lipomas, pigmented macules of the glans penis,
Lhermitte-Duclos(PTEN variant)
PTEN with dysplastic gangliocytoma of the cerebellum
Cowden(PTEN variant)
- Presents in 2nd or 3rd decade
- Macrocephaly & autism
- Mucocutaneous facial & oral Papules
- Gingival cobblestoning
- Acral keratosis
- Benign hamartomas of breast, thyroid, uterus, GI
- Dystrophic and adenomatous multinodular goiter, GI polyps, adenosis
Bannayan-Riley-Ruvalcaba(PTEN variant)
Macrocephaly
Hamartomatous polyposis
Lipomas
Pigmented macules of the glans penis
Proteus Syndrome(PTEN variant)
- CT nevi
- Disproportionate overgrowth
- Dysregulated adipose tissue
- Vascular malformation
- Risk of ovarian or parotid tumor in 2nd decade
Xeroderma Pigmentosum(gene & inheritance)
XPA, XPC, ERCC2, POLH
RecessiveDNA
-repair protein (NER pathway); UV induced DNA damage
Xeroderma Pigmentosum(features)
- Severe sun sensitivity
- UV exposure to conjunctiva, cornea, and lids-> severe keratitis
- Progressive neurologic deterioration
+acquired microcephaly
+decreased/absent DTRs
+progressive SNHL
+cognitive impairment
->1000x increased risk of skin and eye neoplasms
Birt-Hogg-Dube (gene & inheritance)
FLCN
Dominant
Birt-Hogg-Dube(clinical features)
-Skin lesions:
+Fibrofolliculomas
+Perifollicular fibromas
+Trichodiscomas
+Angiofibromas
+Acrochordons
-Bilateral and multifocal renal tumors (CHROMOPHOBE CLEAR CELL renal carcinoma, renal oncocytoma, oncocytic hybrid tumor, clear cell renal carcinom
Constitutional Mismatch Repair Deficiency
-Characterized by:
+high risk of childhood cancers (including LS-associated cancers, hematologic malignancies, and embryonic tumors)
+NF1 type features with cafe-au-lait spots and skinfold freckling
+Lisch nodules, neurofibromas, & tibial pseudoart
Familial Gastrointestinal Stromal Tumor (GIST)
Genes: KIT, PDGFRA, SDHB, SDHC
+Germline mutations in KIT: hyperpigmentation, mast cell tumors, dysphagia
+PDGFRA mutations: large hands
- NF1 can develop GISTs
- Wild type GISTs are defied as GISTs that do not have mutations in KIT, PDGFRA, or BRAF
Familial Pancreatic Cancer
At least two FDR with pancreatic ductal adenocarcinoma
Hereditary syndromes: BRCA2 and CDKN2A
Familial Prostate Cancer
AR, AD, and X-linked inheritance patterns
Hereditary Diffuse Gastric Cancer
- Gene: CDH1 (occurs in 25-50% who meet criteria)
- Increased risk for:
+Diffuse gastric cancer
+Lobular breast cancer
+Signet ring CRC
Hereditary Leiomyomatosis and Renal Cell Cancer
- Gene: FH
- Renal cancer (papillary type 2 “fried egg”)
- Cutaneous leiomyoma
- Uterine fibroids
- Pheos/Paras
Hereditary Melanoma (aka Familial atypical mole and malignant melanoma - FAMMM)
- Genes: CDKN2A, ARF
- Multiple melanotic nevi (usually >50) and fam hx melanoma
- Individuals have a 17% risk for pancreatic cancer by age 75
Hereditary Mixed Polyposis Syndrome
Atypical juvenile polyps
Colonic adenomas
Colorectal carcinomas
Inflammatory and metaplastic polyps
Duplication on chromosome 15q13-q14
Hereditary Papillary Renal Cell Carcinoma
- Gene: MET
- Risk of developing papillary type 1 RCC
Hereditary Paraganglioma-Pheochromocytoma Syndrome(genes)
-SDHB, SDHD, SDHC, SDHAF2, MAX, TEME127
+SDHB “Bad” - increased risk for malignancy, fewer tumors, renal cancer
+SDHD “Dad” - more tumors, decreased malignancy risk, IMPRINTED-Increased risk for Paras/Pheos
Hereditary Retinoblastoma
- RB1 (chr 13)
- Malignant tumor of the retina, usually occurring before 5yrs
+~40% of all retinoblastomas are hereditary
-Osteosarcoma
Juvenile Polyposis Syndrome(gene & inheritance)
SMAD4, BMPR1A
Autosomal dominant
25% de novo
Juvenile Polyposis Syndrome(features)
- 3-5 polyps with juvenile pathology (HAMARTOMAS)
- Increased risk for CRC, stomach, upper GI tract, and pancreatic cancer
- Extraintestinal features:
+valvular heart diesease (11%)
+telangiectasia or vascular anomalies (9%, all in SMAD4)
+Macrocephaly
Nevoid Basal Cell Carcinoma Syndrome
- Gene: PTCH1
- Multiple jaw keratocysts beginning in teens
- Multiple basal cell carcinomas beginning in 20s
- Physical features:
+Macrocephaly, frontal bossing, coarse facial features, facial milia, skeletal anomalies, palmar plantar pits
+Cardiac fibromas, ovarian fibromas
Peutz-Jeghers Syndrome
- Gene: STK11
- Mucocutaneous hyperpigmentation of the mouth, nose, lips, eyes, genitalia, or fingers
- Multiple hamartomatous polyps in the GI tract
- Increased risk for:
+CRC, pancreatic, gastric, small intestinal, breast cancers
+ovarian sex cord tumors
Serrated Polyposis Syndrome(formerly hyperplastic)
- Unknown genetic causeReferral reasons:
- >=5 serrated polyps near sigmoid (2 must be >10mm)
- 20+ serrated polyps anywhere
- Any number of serrated polyps near sigmoid if FDR with SPS
Familial Colorectal Cancer, Type X(FCCTX)
- Meets Amsterdam criteria (clinical dx Lynch)
- MSI stable
- IHC normal
- Left sided tumors
- CRC risk is 2-fold increase, later onset
- CRC only (NO enometrial)
- More polyps than lynch
- Management: +c/scope every 5y starting 5-10yrs before earliest dx
BRCA Carrier Rate(AJ population vs. General Population)
AJ population: 1/40
General population: 1/800
BRCA VUS rate (African American vs. European Population)
African American: 20%
**AA cancers are more commonly triple negative
European Ancestry: 7%
What factors cause an increased risk for breast cancerProtective factors for breast cancer
Increased risk factors (prolonged estrogen exposure):
- Menarche <12yrs-Nulliparity
- Menopause >52yrs
- Consuming >2-3 EtOH drinks per week
Protective factors:
- 4 hours exercise per week-Breastfeeding
- Maintaining ideal weight
- Kids before 30
BRCA facts
- Can BRCA1 tumors be treated with drugs that target the estrogen receptor?
- Is BRCA1 more likely to be invasive lobular?
- Is BRCA1 or BRCA2 more likely to be triple negative?
- Is BRCA1 or BRCA2 more likely to be estrogen receptor positive?
- No
- No
- BRCA1
- BRCA2
MUTYH-associated polyposis
MUTYH**Mutations lead to G:C or T:A transversions can lead to Lynch-like features/cancer risks -Characterized by an increased risk for adenomatous colon polyps and CRC (80%)-High amount of phenotypic heterogeneity (10-100 adenomas, 100+ adenomas, APC normal)
HNPCC/Lynch Syndrome
-MLH1, PMS2, MSH2, MSH6, EPCAM- MLH1 & MSH2 most common | MSH6 rareMajor associated tumors:-Colorectal (R ascending) - 80% lifetime risk, Uterine, Small bowel, Ureter, Renal pelvisOther associated tumors:-Ovarian, Stomach**, Gallbladder, Brain Treatme
Amsterdam I & II Criteria
-3 individuals with CRC (1 must be FDR of other 2)-2 generations-1 diagnosed <50yrs**FAP excluded
Bethesda Criteria
-CRC diagnosed <50yrs-Personal history of 2 Lynch-related cancer diagnoses-CRC that is MSI-high dx <60yrs-Personal history of CRC & Fam hx (FDR) with Lynch cancer dx <50yrs-Personal history CRC with 2 FDR or SDR wit Lynch cancer at any age**Has a 75%
MLH1 & PMS2(tumor testing)
MMR genes - HNPCC/Lynch**Most tumors are MSI-high (must rule out BRAF mutation)-Absence of both: MLH1 mutation OR MLH1 promotor hypermethylation (R/O through BRAF testing)-Absence of PMS2: PMS2 mutation or MLH1 mutation
MSH2 & MSH6(tumor testing)
MMR genes - HNPCC/Lynch- Absence of both: MSH2 mutation OR EPCAM mutation-Absence of MSH6: MSH6 mutation
Li-Fraumeni(gene, inheritance & diagnostic criteria)
TP53 (17p13) & CHEK2 (22q12.1)Dominant-TP53 protects against cancer but causes premature aging; policing of cells is too strict - too many cells enter apoptosis; Upregulation occurs when mutation present-~20% de novo-Multiple primary tumors with the first primary often occurring before age 30. ~100% lifetime risk for cancer.**TP53 mutation analysis for female breast cancer <35 years -Proband with sarcoma <45yrs, FDR with cancer <45 AND FDR/SDR with any cancer <45 or sarcoma at any age
Li-Fraumeni(associated tumors)
NAME?
Chompret Criteria(Li-Fraumeni)
-Proband with tumor in LFS-spectum <46yrs AND at least 1 FDR/SDR with LFS tumor (except breast if proband also has breast) before age 56 or with multiple tumors; OR-Proband with multiple tumors (except multiple breast tumors) two of which belong to LFS tu
MEN1
MEN1**Sequencing detects most cases**MEN1 - tumor suppressor gene Associated tumors:-Parathyroid (hyperparathyroidism, hypercalcemia)-Pituitary (prolactinoma)-Pancreatic neuroendocrine (gastrinoma, insulinoma, glucagonoma)-Carcinoid tumors-Adrenocortical tumors Growths:-Angiofibromas, Collagenomas, Lipomas, Meningiomas, Ependymomas, Leiomyomas
MEN1(treatment)
-Head MRI @ 5yrs-Abdominal CT or MRI @ 20yrs-Calcium serum concentrations @ 8yrs-Gastrin @ 20yrs-Pancreatic polypeptide @ 10yrs-Prolactin @ 5yrs
MEN2A
-Medullary thyroid cancer (<35 yrs)-Pheochromocytoma (50%)-Hyperparathyroidism-Parathyroid adenomas-May present with cutaneous lichen amyloidosis**Prophylactic thyroidectomy **GoF mutations
MEN2B
-Medullary thyroid cancer in childhood (prophylactic thyroidectomy BEFORE age 1)-Pheochromocytoma (50%)-Marfanoid habitus, kyphoscoliosis-Hooded eyes, prominent lips-Growths: mucosal neuromas, diffuse ganglioneuromatosis of the digestive tract**ABSENCE OF
Familial Medullary Thyroid Cancer
Medullary thyroid cancer without other symptoms of MEN2A/MEN2B**GoF mutations
Hirschprung’s disease
**LoF mutations (chromosome 10)MegacolonConstipation
Neurofibromatosis Type 2
NF2 (50% de novo rate) - tumor suppressor-Bilateral vestibular schwannomas by 30yrs +conductive hearing loss +tinnitus +balance dysfunction (death by drowning key finding) +decreased visual acuity-Schwannomas elsewhere in body +nerve sheath tumors-Ependymomas-Meningiomas-Cafe-au-lait macules-Cataracts
Tuberous Sclerosis Complex
TSC1, TSC2**TSC2/PCKD contiguous gene deletion, features of TSC and PKD**sequencing -SEIZURES (hypsarrhythmia noted on EEG)-CARDIAC RHABDOMYOMA-Angiofibroma-Cortical dysplasia-Hypomelanotic macules-LAMs (lymphangioleiomyomatosis)-Multiple retinal nodular hamartomas-SHAGREEN PATCH-Renal angiomyolipoma-SEGAs (subependymal giant cell astrocytoma)-Subependymal nodules-Ungual fibromas-Neuroendocrine tumors+pituitary adenoma, parathyroid adenoma, pancreatid adenoma, gastrinoma, pheochromocytoma, carcinoids Minor features:-“Confetti” hypopigmented skin lesions, Dental pits, Intraoral fibromas, Multiple renal cysts, Retinal achromic patch
Von Hippel-Lindau Disease
VHL**sequencing followed by deletion analysis (by southern blot) -CLEAR CELL renal carcinoma-Spinal or cerebellar hemangioblastoma-Pancreatic neuroendocrine tumors-Endolymphatic sac tumors-Pheochromocytoma (secrete Norepi only)-Paraganglioma-Retinal angioma-Multiple renal and pancreatic cysts
PTEN
-2 or more hamartomas in the colon-Breast cancer-Uterine cancer-FOLLICULAR thyroid cancer-Colon cancer-Renal cell carcinoma-Uterine leiomyomas (fibroids)-Mucocutaneous lesions +trichilemmomas +acral keratoses +papillomatous lesions +lipomas +fibromas Othe
Lhermitte-Duclos(PTEN variant)
PTEN with dysplastic gangliocytoma of the cerebellum
Cowden(PTEN variant)
-Presents in 2nd or 3rd decade- Macrocephaly & autism-Mucocutaneous facial & oral Papules-Gingival cobblestoning-Acral keratosis-Benign hamartomas of breast, thyroid, uterus, GI-Dystrophic and adenomatous multinodular goiter, GI polyps, adenosis a
Bannayan-Riley-Ruvalcaba(PTEN variant)
NAME?
Proteus Syndrome(PTEN variant)
-CT nevi-Disproportionate overgrowth-Dysregulated adipose tissue-Vascular malformation-Risk of ovarian or parotid tumor in 2nd decade
Xeroderma Pigmentosum
XPA, XPC, ERCC2, POLHRecessive; DNA-repair protein (NER pathway); UV induced DNA damage-Severe sun sensitivity-UV exposure to conjunctiva, cornea, and lids-> severe keratitis-Progressive neurologic deterioration +acquired microcephaly +decreased/absent DTRs +progressive SNHL +cognitive impairment->1000x increased risk of skin and eye neoplasms
Birt-Hogg-Dube
FLCN-Skin lesions: +Fibrofolliculomas +Perifollicular fibromas +Trichodiscomas +Angiofibromas +Acrochordons-Bilateral and multifocal renal tumors (CHROMOPHOBE CLEAR CELL renal carcinoma, renal oncocytoma, oncocytic hybrid tumor, clear cell renal carcinoma)-Multiple bilateral lung cysts (lung blebs) often associated with spontaneous pneumothorax
Constitutional Mismatch Repair Deficiency
-Characterized by: +high risk of childhood cancers (including LS-associated cancers, hematologic malignancies, and embryonic tumors) +NF1 type features with cafe-au-lait spots and skinfold freckling +Lisch nodules, neurofibromas, & tibial pseudoarthos
Familial Gastrointestinal Stromal Tumor (GIST)
Genes: KIT, PDGFRA, SDHB, SDHC +Germline mutations in KIT: hyperpigmentation, mast cell tumors, dysphagia +PDGFRA mutations: large hands- NF1 can develop GISTs-Wild type GISTs are defied as GISTs that do not have mutations in KIT, PDGFRA, or BRAF
Familial Pancreatic Cancer
NAME?
Hereditary Diffuse Gastric Cancer
-Gene: CDH1 (occurs in 25-50% who meet criteria)-Increased risk for: +Diffuse gastric cancer +Lobular breast cancer +Signet ring CRC
Hereditary Leiomyomatosis and Renal Cell Cancer
-Gene: FH-Renal cancer (papillary type 2 “fried egg”)-Cutaneous leiomyoma-Uterine fibroids-Pheos/Paras
Hereditary Melanoma (aka Familial atypical mole and malignant melanoma - FAMMM)
-Genes: CDKN2A, ARF-Multiple melanotic nevi (usually >50) and fam hx melanoma-Individuals have a 17% risk for pancreatic cancer by age 75
Hereditary Mixed Polyposis Syndrome
NAME?
Hereditary Papillary Renal Cell Carcinoma
-Gene: MET-Risk of developing papillary type 1 RCC
Hereditary Paraganglioma-Pheochromocytoma Syndrome
-SDHB, SDHD, SDHC, SDHAF2, MAX, TEME127 +SDHB “Bad” - increased risk for malignancy, fewer tumors, renal cancer +SDHD “Dad” - more tumors, decreased malignancy risk, imprinted-Increased risk for Paras/Pheos
Hereditary Retinoblastoma
-RB1 (chr 13)-Malignant tumor of the retina, usually occurring before 5yrs +~40% of all retinoblastomas are hereditary
Juvenile Polyposis Syndrome
SMAD4, BMPR1A -3-5 polyps with juvenile pathology-Increased risk for CRC, stomach, upper GI tract, and pancreatic cancer-Extraintestinal features: +valvular heart diesease (11%) +telangiectasia or vascular anomalies (9%, all in SMAD4) +Macrocephaly (11%)-SMAD4 may also show symptosm of hereditary hemorrhagic telangiectasia
Nevoid Basal Cell Carcinoma Syndrome
-Gene: PTCH1-Multiple jaw keratocysts beginning in teens-Multiple basal cell carcinomas beginning in 20s-Physical features: +Macrocephaly, frontal bossing, coarse facial features, facial milia, skeletal anomalies +Cardiac fibromas, ovarian fibromas, medul
Peutz-Jeghers Syndrome
-Gene: STK11-Mucocutaneous hyperpigmentation of the mouth, nose, lips, eyes, genitalia, or fingers-Multiple hamartomatous polyps in the GI tract-Increased risk for: +CRC, pancreatic, gastric, small intestinal, breast cancers +ovarian sex cord tumors with
Serrated Polyposis Syndrome(formerly hyperplastic)
-Unknown genetic causeReferral reasons:->=5 serrated polyps near sigmoid (2 must be >10mm)-20+ serrated polyps anywhere-Any number of serrated polyps near sigmoid if FDR with SPS
Familial Colorectal Cancer, Type X(FCCTX)
-Meets Amsterdam criteria (clinical dx Lynch)-MSI stable-IHC normal-Left sided tumors-CRC risk is 2-fold increase, later onset-CRC only (NO enometrial)-More polyps than lynch-Management: +c/scope every 5y starting 5-10yrs before earliest dx
Major Malformation
NAME?
Minor Anomaly
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Syndrome
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Association
NAME?
VACTERL
Vertebral anomaliesAnal atresiaCardiac defectsTracheoesophageal fistulaEsophageal atresiaRenal and radial anomaliesLimb defects
Malformation
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Sequence
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Potter Sequence
Renal agenesis/renal malformation leading to oligohydramnios which causes distinct physical appearance
Pierre-Robin Sequence
Micrognathia leads to cleft palate and glossoptosis and subsequent respiratory distress
Deformation
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Disruption
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Dysplasia
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CHARGE
ColobomaHeartchoanal Atresiagrowth RetardationGenital abnormalitiesEar abnormalities
Locus Heterogeneity
Mutations in DIFFERENT GENES can cause the SAME DISORDER/phenotypic presentation +ie. Noonan syndrome, Autism
Allelic Heterogeneity
DIFFERENT MUTATIONS/alleles on the SAME GENE can cause the SAME DISORDER +ie. Cystic Fibrosis
Phenotypic Heterogeneity
DIFFERENT MUTATIONS on the SAME GENE can cause DIFFERENT PHENOTYPES +ie. FBN1, FGFR3
Pleiotropy
One gene mutation influences many unrelated phenotypic traits +ie. PKU, Sickle-cell
Variable Expressivity
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Penetrance
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Arthrogryposis
Congenital joint contracture in two or more areas of the body
Amyoplasia
-Literally “no muscle growth”-Replacement of skeletal muscle by dense fibrous tissue and fat-May also include vascular compromise-Form of arthrogryposis**Occurs sporadically due to lack of fetal movement which may be due to an external/environmental facto
Ectrodactyly
Deficiency or absence of one or more CENTRAL digits of the hand or foot
Klippel-Feil Anomaly
-Congenital fusion of any two of the seven cervical vertebrae-May be caused by mutations in GDF3 and GDF6-AD form at 8q22.2 also associated with laryngeal malformation
Mesomelic shortening
Shortening of the DISTAL long bones
Rhizomelic shortening
Shortening of the PROXIMAL long bones
Micromelic shortening
Shortening of the DISTAL and PROXIMAL long bones
Talipes Equinovalgus/Equinovarus
Club foot-Valgus: feet turned outward-Varus: feet turned inward
Triploidy
Entire extra set of chromosomes69, XXX / 69, XXY-Present in 1-2% of conceptions, 10% of miscarriages-Typically results in miscarriage in the FIRST TRIMESTER
Digyny
NAME?
Diandry
-Extra set of paternal chromosomes-Large cystic/partial molar placenta-Normal growth or limited fetal growth restriction-Maternal serum screening 10x higher hCG -Maternal risk for pre-eclampsia and choriocarcinoma
Common features of triploidy
3,4 syndactylyCystic placenta
Can Triploidy be detected on NIPT?
Yes, only via SNP-method (ie. Natera)
Trisomy 13(Patau Syndrome)
-Maternal Meiosis I-Holoprosencephaly-Cleft lip-VSD, Double outlet right ventricle-Echogenic kidneys-Omphalocele**MSS does not adjust risk for this disorder-Few survive to term, most die within first year of life
Trisomy 18(Edward Syndrome)
-Maternal Meiosis II-Clenched fists-Choroid Plexus cysts-Rocker bottom feet-IUGR-Polyhydramnios-Omphalocele**MSS: all markers low-Few survive to term, most die within first year of life
Trisomy 21 - Prenatal findings(Down Syndrome)
-Maternal OR Paternal Meiosis I-Increased nuchal translucency in first trimester-Increased nuchal fold in second trimester (>6.0mm)-Structural heart defect (50%)-Hypoplastic nasal bone-Echogenic bowel-Echogenic intracardiac focus (weak association)**MSS:
Trisomy 21 - Postnatal findings(Down Syndrome)
-Mild to moderate ID-Good social skills-CHD (~50% - VSD, ASD, ToF)-Increased risk for leukemia-Decreased risk for solid tumors-BRUSHFIELD SPOTS-GI problems-Hearing loss-Hypothyroidis-Upslanted palpebral fissures-Epicanthal folds-Sandal gap-Short stature
Cat Eye Syndrome
-Partial trisomy or tetrasomy of Chromosome 22 +Associated with marker chromosome 22-Usually de novo but parents may be unaffected mosaic- Features +Coloboma +Preauricular pits/tags +Cardiac defects +Missing or underdeveloped kidneys +Short st
Turner Syndrome
45, X-Due to paternal meiosis I-Features +Coarctation/Aortic stenosis +Obesity +Amenorrhea +STREAKED OVARIES +Learning difficulties +Horseshoe kidney +Short stature +Webbed neck +Cystic hygroma
Klinefelter Syndrome
47, XXY-Maternal or Paternal Meiosis I-Tall stature-Normal intelligence (may have reading/speech difficulties)-Feminization at puberty +Gynecomastia, broad hips, reduced/absent facial hair-Reduced fertility-Hypogonadism-Increased risk for Breast cancer and Thromboembolism
XYY Syndrome
47, XYY-Tall stature-DD-Learning difficulties-Behavior problems-No like to increased aggression-NORMAL sexual development
TRUE OR FALSE. The karyotype of a spontaneous abortion is more likely to be abnormal than that of a stillborn infant.
TRUE
Chromsomes where imprinting should be considered
6, 7, 11, 14, 15, 16
Russell-Silver Syndrome(mode of imprinting)
-11p15.5 (30-50% of cases) +Hypomethylation on paternal chromosomes at IC1 leads to H19 expression and IGF2 silencing -Typically, IC1 is methylated with IGF2 expression +Duplication of maternal 11p15.5 (unknown prevalence)-Maternal UPD 7 (7-10
Russell-Silver Syndrome(clinical features)
-Triangular face shape with delicate features-Head sparing IUGR –> SGA/low birth weight-Normal Head Circumference-Hypoglycemia –> sweating at night-Developmental delay, Learning Disabilities-BLUE SCLERA IN CHILDHOOD-Body asymmetry (small, arm span const
Beckwith-Wiedemann Syndrome(mode of imprinting)
11p15 +Maternal loss of methylation IC2 (50%) (causes expression of IGF2 and silencing of H19 - BAD) +Paternal UPD (20% of cases) +Maternal gain of methylation at IC1 (5%) (causes expression of IGF2 and silencing of H19 - BAD) +Maternal CDKN1C mutation (40% familial; 5-10% sporadic) - CDKN1C stops cells from entering cell cycle, mutations allows for overgrowth/overproliferation**IGF2=overgrowth***Need mom expressed (H19)
Beckwith-Wiedemann Syndrome(Major features)
-Overgrowth-Macrosomia-Earlobe creases, helical ear pits-Macroglossia (enlarged tongue)-OMPHALOCELE-Visceromegaly-Increased risk for embryonic tumors (wilms, hepatoblastoma, neuroblastoma) +Test AFP, discontinue at age 4-Renal abnormalities-Cytomegaly o
Beckwith-Wiedemann Syndrome(Minor features)
NAME?
Angelman Syndrome(mode of imprinting)
15q11.2q13 +Maternal 15q11.2q13 deletion including UBE3A (65-75%) +Paternal UPD (3-7%) +Maternal UBE3A mutation (5-11%) +Maternal imprinting defect of 15q11.2q13 (maintains methylation improperly)***Need Mom expressed
Angelman Syndrome(major features)
-“Happy puppet syndrome”-Severe DD beginning at 6-12 months-Limited or absent speech-Ataxia-Hand Flapping-Seizures-PROGRESSIVE MICROCEPHALY (born normocephalic, microcephaly by age 2)-Laughter, smiling, excitability
Angelman Syndrome(minor features)
NAME?
Prader-Willi Syndrome(mode of imprinting)
15q11.2q13 +Maternal UPD (20-30%) +Paternal deletion 15q11.2q13 (65-75%) +Paternal gene deletion of region responsible for methylation/imprinting (de novo OR inherited) +Unbalanced chromosomal rearrangement***Need Dad expressed
Prader-Willi Syndrome(features)
-Hypotonia & FTT in neonatal/early development-GDD-Excessive eating (pica)-Obesity-Mild ID-Hypogonadism-Hypothyroidism-Sleep Abnormalities-Behavioral problems (Autistic beh., controlling/manipulative, tantrums, hyperactivity, psychosis, compulsive beh
Birt-Hogg-Dube
Individual with a person OR FDR with 5 or more BHD associated facial or truncal papules
Constitutional Mismatch Repair Deficiency
Any individual with a personal for FDR with:-LS-associated cancer in childhood-Another type of childhood cancer AND one or more of the following: +Cafe-au-lait macules, skinfold freckling, lisch nodules, neurofibromas, tibial pseudoarthrosis or hypopigmented skin lesions +Family history of LS-associated cancer +A second primary cancer +A sibling with a childhood cancer +Consanguineous parents
Cowden Syndrome
Any individual with a personal history or FDR with:-Lhermitte-Duclose diagnosed after 18yrs-Any 3 criteria from the major or minor diagnostic criteria list in the same person
FAP
Any individual with personal or FDR with:-10+ adenomatous colon polyps with or without a CRC or other FAP-assoc cancer-A cribriform morular variant of papillary thyroid cancer-A desmoid tumor-Hepatoblastoma diagnosed before age 5
Familial GIST
Any individual with a personal history or FDR with:-3+ close relatives with GIST-Wild-type GIST-Individuals with 3+ GISTs
Familial Pancreatic Cancer
Any individual with a personal or FDR with:-AJ ancestry and pancreatic cancer at any age-Pancreatic cancer and a close relative with pancreatic cancer-3+ cases of breast, ovarian, pancreatic, and/or aggressive prostate cancer-3+ cases of pancreatic cancer and/or melanoma
Familial Prostate Cancer
Any individual with a personal or FDR with:-3 or more FDR with prostate cancer-2 or more cases of prostate cancer diagnosed <55-Aggressive prostate cancer (Gleason score 7+) and 2+ cases of breast, ovarian, or pancreatic cancer
Hereditary Diffuse Gastric Cancer
Any individual with a personal or FDR with diffuse gastric cancer
Hereditary Leiomyomatosis and Renal Cell Cancer
Any individual with a personal or FDR with:-Cutaneous leiomyomas-RCC with histology characteristic of hereditary leiomyomatosis and renal cell cancer
Familial Atypical Mole and Malignant Melanoma(Hereditary Melanoma)
Any individual with a personal or FDR with:-3 or more melanomas in the same person-3 or more cases of melanoma and/or pancreatic cancer
Hereditary Mixed Polyposis Syndrome
Any individual with a personal or FDR with 10+ colorectal polyps with mixed histology
Hereditary Papillary Renal Cell Carcinoma
Any individual with a personal or FDR with papillary type 1 RCC
Hereditary Paraganglioma-Pheochromocytoma Syndrome
Any individual with a personal or FDR with a paraganglioma or pheochromocytoma
Hereditary Retinoblastoma
Any individual with a personal or FDR with a retinoblastoma
Juvenile Polyposis Syndrome
Any individual with a personal or FDR with:-3-5 cumulative histologically proven juvenile GI polyps-Any number of juvenile GI polyps with a positive family history of JPS-Multiple juvenile polyps located throughout the GI tract
Lynch Syndrome
Any individual with a personal or FDR with:-CRC or endometrial cancer before 50-CRC or endometrial cancer diagnosed after 50 with a FDR with CRC or endometrial cancer at any age-Synchronous or metachronous CRC or endometrial cancer-Sebaceous adenoma or carcinoma and one or more additional case of any LS-associated cancer in the same person or relatives-A tumor exhibiting MMR deficiency-Fam hx of 3+ LS-associated cancers
Melanoma Astrocytoma Syndrome
Any individual with a personal or FDR with:-Melanoma and astrocytoma in the same person-One case of melanoma and one case of astrocytoma in 2 FDR
MEN1
Any individual with a personal or FDR with:-2+ different MEN1-associated tumors in the same person-Gastrinoma-Multiple different pancreatic neuroendocrine tumors in the same person-Parathyroid adenoma diagnosed before 30-Parathyroid adenomas involving multiple glands-Parathyroid adenoma with a fam hx of hyperparathyroidism or MEN1-associated tumors
MEN2
Any individual with a personal or FDR with:-MTC-Pheochromocytomas-Oral or ocular neuromas (lips, tongue, sclera, or eyelids)-Diffuse ganglioneuromatosis of the GI tract
MUTYH-associated polyposis
Any individual with a personal or FDR with:-10+ cumulative adenomatous colon polyps with or without CRC-MMR proficient CRC diagnosed
Nevoid Basal Cell Carcinoma Syndrome
Any individual with a personal or FDR with any 2 criteria-Multiple jaw keratocysts beginning in teens and multiple basal-cell carcinomas beginning in 20s-Macrocephaly-Frontal bossing-Coarse facial features-Facial milia-Skeletal anomalies-Cardiac fibromas, Ovarian fibromas, Medulloblastoma
Peutz-Jeghers Syndrome
Any individual with a personal or FDR with:-2+ histologically confirmed PJ GI polyps-One or more PJ GI polyp with mucocutaneous hyperpigmentation-Ovarian sex cord tumor with annular tubules-Adenoma malignum of the cervix-Sertoli cell tumor-Pancreatic cacner and one or more PJ GI polyp-Breast cancer and one or more PJ GI polyp-One ore more PH polyp and a positive family history of PJS
Rhabdoid tumor predisposition types 1 & 2
Any individual with a personal or FDR with a rhabdoid tumor, including small cell carcinoma of the ovary, hypercalcemic type
Serrated Polyposis Syndrome
Any individual with a personal or FDR with:-At least 5 serrated polyps proximal to the sigmoid colon, 2 of which are >1 cm (10mm) in diameter->20 serrated polyps throughout the large bowel-Any number of serrated polyps proximal to the sigmoid colon and a positive family history of SPS
Tuberous Sclerosis Complex
Any individual with a personal or FDR with any two criteria-Brain tumors-Kidney tumors-Heart tumors-Skin and neurological abnormalities-Skin lesions
Von-Hippel-Lindau Syndrome
Any individual with a personal or FDR with:-Clear cell RCC if he/she: +has bilateral or multifocal tumors +is diagnosed before age 50 +has a close relative with clear cell RCC-CNS hemangioblastoma-Pheochromocytoma-Endolymphatic sac tumor-Retinal capillary hemangioma