Classification, Biodiversity and Conservation Flashcards
biological species concept
a group of organisms with similar morphological and physiological features that are able to breed together and produce fertile offspring
morphological
physical/structural features of an organism that can be studied and used to investigate the relatedness of organisms of different species
physiological
physiology is the study of the functions and mechanistic processes that occur in a living system. physiology focuses on how organisms, organ systems, individual organs, cells and biomolecules carry out the chemical and physical functions in a living system
morphological species concept
grouping together organisms that share many physical features that distinguish them from other species
ecological species concept
a population of similar organisms living in the same area at the same time
binomial system
a two-part scientific name given to all species
Taxonomy
-the practice of biological classification
-involves organising and grouping similar organisms into a series of categories or taxa
-it can make them easier to understand and remember
Highest taxonomical rank within the hierarchical classification system of organisms
Domain
What has a major role in the classification of organisms into the three domains
cell type:
-Prokaryotic cells are easily distinguishable in that they lack a nucleus
-Eukaryotic cells have compartmentalised structures, with at least their genetic material segregated from the rest of the cell in a nucleus
what have scientists realised based upon molecular analysis of RNA genes in particular
that using cell type to classify organisms is insufficient, and that prokaryotes could be divided into two separate groups (domains)
The three domains are:
Archaea (prokaryotes)
Bacteria (prokaryotes)
Eukarya (eukaryotes)
How archaea is similar to bacteria
-sometimes referred to as the extremophile prokaryotes
-were first discovered living in extreme environments, but not all archaea do
-cells have no nucleus (and so are prokaryotic)
-a similar size range as bacteria
-metabolism is similar between the two groups
Features that distinguish archaea from bacteria
-Unique lipids being found in the membranes of their cells
-No peptidoglycan in their cell walls
-Ribosomal structure (particularly that of the small subunit) are more similar to the eukaryotic ribosome than that of the bacteria
-DNA transcription is more similar to that of eukaryotes
How membrane lipids of the archaea domain are unique
-Not found in any bacterial or eukaryotic cells
-The membrane lipids of Archaea consist of branched hydrocarbon chains bonded to glycerol by ether linkages, a far cry from bacteria’s membrane lipids which consists of unbranched hydrocarbon chains bonded to glycerol by ester linkages
How ribosomal RNA of the archaea domain are unique
-Both Archaea and Bacteria possess 70S ribosomes, but the 70S ribosomes in Archaea possess a smaller subunit that is more similar to the subunit found in Eukaryotic ribosomes than subunits in Bacterial ribosomes:
*The base sequences of ribosomal RNA in Archaea show more similarity to the rRNA of Eukarya than Bacteria
*The primary structure of ribosome proteins in Archaea show more similarity to the ribosome proteins in Eukarya than Bacteria
How cell wall composition in the archaea domain are unique
Organisms from the Bacteria domain have cells that always possess cell walls with peptidoglycan while organisms from the Archaea domain also have cells that always possess cell walls, however these do not contain peptidoglycan
Give an example of a species in the archaea domain
Halobacterium salinarum are a species of the archaea domain that can be found in environments with high salt concentrations like the Dead Sea
Bacteria
-organisms that have prokaryotic cells which contain no nucleus
-vary in size over a wide range: the smallest are bigger than the largest known-viruses and the largest are smaller that the smallest known single-celled eukaryotes
-cells divide by binary fission
An example of a species in the bacterial domain
Staphylococcus pneumoniae is a bacteria species that causes pneumonia
Eukarya
-organisms that have eukaryotic cells with nuclei and membrane-bound organelles
-vary massively in size from single-celled organisms several micrometres across to large multicellular organisms many-metres in size, such as blue whales
-cells divide by mitosis
-can reproduce sexually or asexually
Example of a species in the eukarya domain
Canis lupus also known as wolves
Lowest taxonomical rank within the hierarchical classification system of organisms
species
Similar species can be grouped in a
genus
Similar genuses can be grouped in a
family
Similar families can be grouped into an
order
Similar orders can be grouped into a
class
Similar classes can be grouped into a
phylum
Similar phyla can be grouped into a
kingdom
Similar kingdoms can be grouped into a
domain
a mnemonic to remember the different ranks in the taxonomic classification system
Kings Play Chess On Fancy Gold Squares
Kingdom Phylum Class Order Family Genus Species
The higher ranks in the hierarchical classification system contain
more organisms with less similarity between them
The lower ranks in the hierarchical classification system contain
fewer organisms with more similarity between them
The 4 kingdoms in domain Eurkya
Protoctista
Fungi
Plantae
Animalia
Kingdom Protoctista
-a broad group of cellular life that encompasses all eukaryotic cells that do not belong to the other three eukaryotic kingdoms
-show great diversity in all aspects of life including structure, life cycle, feeding and trophic levels and well as modes of locomotion
-can exist as single-celled organisms or as a group of similar cells
-A group of Protoctista known as protozoa possess cells similar to animal cells; their cells have no cell wall
-Another group of Protoctista known as algae possess cells similar to plant cells; their cells have cellulose cell walls and chloroplasts
An example of a species in the kingdom Protoctista
Stentor roseli is a protoctist that has flagella all over its body which help it feed and move
Kingdom Fungi
-A fungus is thought to be the world oldest organism thought to be aged somewhere between 1500 - 10,000 years old
-cells of fungi possess non-cellulose cell walls (often made of the polysaccharides chitin and glucans) and don’t have cilia
-Heterotrophs:
* They use organic compounds made by other organisms as their source of energy and molecules for metabolism
* They obtain this energy and carbon by digesting dead/decaying matter extracellularly or from being parasites on living organisms
-reproduce using spores that disperse onto the ground nearby
-have a simple body form:
* They can be unicellular (like the common baker’s yeast Saccharomyces cerevisiae)
* Some consist of long threads called hyphae that grow from the main fungus body (mycelium)
* Larger fungi possess fruiting bodies that release large numbers of spores
An example of a species in the kingdom Fungi
The mould found on bread is actually a fungus: bread mould fungus Rhizopus nigricans
Kingdom Plantae
-Multicellular eukaryotic organisms
-Plant cells have:
* All have cell walls composed of cellulose
* Possess large (and usually permanent) vacuoles that provide structural support
* Are able to differentiate into specialized cells to form tissues and organs
* Possess chloroplasts that enable photosynthesis (not all plant cells have chloroplasts)
* Can sometimes have flagella
-They are autotrophs; they can synthesize their organic compounds and molecules for energy use and building biomass from inorganic compounds
-They have complex body forms; such as branching systems above and below the ground
An example of a species in the kingdom Plantae
Bristlecone pines are found in the USA, it is estimated that some of them could be 3000 years old
Kingdom Animalia
-Multicellular eukaryotic organisms
-Animal cells:
* Are able to differentiate into many different specialised cell types that can form tissues and organs
* Have small temporary vacuoles (for example, lysosomes)
* Have no cell walls
* Sometimes have cilia
-They are heterotrophs; have a wide range of feeding mechanisms
-They have a wide range of body forms:
* Communication within their complex body forms takes place through a nervous system and chemical signalling
An example of a species in the Kingdom Animalia
Blue whales are the largest living animal species
Viruses
-microorganisms that can only be seen using an electron microscope
-have no cellular structure (and so are acellular and no metabolism)
-hijack the DNA replication machinery in host cells; energy viruses need for replication is provided by respiration in the host cell
-possess none of the characteristic features used for classifying organisms so they sit outside of the three-domain classification system
-there is a wide-ranging debate as to whether viruses should be classified as ‘living’ or ‘non-living’ based on their inability to carry out the defining features of life outside of a host cell
According to what are viruses classified
according to the type of nucleic acid (RNA or DNA) their genome is made from, and whether it is single-stranded or double-stranded
How is genetic material in viruses different from the one present in cellular organisms
In cellular organisms like animals and plants, DNA is always double-stranded and RNA is usually always single-stranded, however in viruses, DNA and RNA can be either single-stranded or double-stranded
The four groups of DNA that exist
1) DNA single-stranded viruses
2) DNA double-stranded viruses
3) RNA single-stranded viruses
4) RNA double-stranded viruses
genome of SARS-CoV-2, the virus responsible for the COVID-19 pandemic is RNA single-stranded
Community
when it comes to ecosystems
a group of species that interact with each other
Ecosystem
a relatively self-contained community of interacting organisms and the environment they live in, and interact with
The two components that make up an ecosystem
living (biotic) components and non-living (abiotic)components
habitat
The place where a species lives within an ecosystem
niche
-The role that species plays within an ecosystem; how an organism fits into the ecosystem
-Encompasses where in the environment the organism is, how it gets its energy and how it interacts with other species and its physical environment
Biodiversity
a study of all the variation that exists within and between all forms of life; looks at the range and variety of genes, species and habitats within a particular region
Three ways you can assess biodiversity
-The number and range of different ecosystems and habitats
-The number of species and their relative abundance
-The genetic variation within each species
why is biodiversity important
for the resilience of ecosystems, in that it allows them to resist changes in the environment
Ecosystem or habitat diversity
-The range of different ecosystems or habitats within a particular area or region
-If there is a large number of different habitats within an area, then that area has high biodiversity
-If there is only one or two different habitats then an area has low biodiversity
Species diversity
-An ecosystem such as a tropical rainforest that has a very high number of different species would be described as species-rich; species richness is the number of species within an ecosystem
-Species diversity looks at the number of different species in an ecosystem, and also the evenness of abundance across the different species present
-The greater the number of species in an ecosystem, and the more evenly distributed the number of organisms are among each species, then the greater the species diversity [For example, an ecosystem can have a large number of different species but for some species, there may only be 3 or 4 individuals. As a result, this ecosystem does not necessarily have high species diversity]
-Ecosystems with high species diversity are usually more stable than those with lower species diversity as they are more resilient to environmental changes
Genetic diversity
-The genetic diversity within a species is the diversity of alleles and genes in the genome of species
-Genetic diversity is measured by working out the proportion of genes that have more than one form (allele) and how many possible alleles each gene has
-There can be genetic differences or diversity between populations of the same species. This may be because the two populations occupy slightly different ranges in their habitat and so are subject to slightly different selection pressures that affect the allele frequencies in their populations
-Genetic diversity within a single population has also been observed. This diversity in a species is important as it can help the population adapt to, and survive, changes in the environment. The changes could be in biotic factors such as new predators, pathogens and competition with other species
Or the changes could be through abiotic factors like temperature, humidity and rainfall
Finding out which species live in an ecosystem and the size of the populations requires
the identification and cataloguing of all organisms present to build a species list
For which types ecosystems is it possible to identify and catalogue all of the organisms present to build a species list
Ecosystems with very small areas or where the species are very large like trees. For larger and more complex ecosystems like rainforests, it is simply impossible to find, identify and count every organism that exists there
How to assess the biodiversity of larger more complex ecosystems
By taking different samples of the area using it to make an estimate for the total species numbers in the area
Sampling
a method of investigating the abundance and distribution of species and populations
The two different types of sampling
Random
Systematic
random sampling and it’s advantages
-In random sampling the positions of the sampling points are completely random or due to chance
-This method is beneficial because it means there will be no bias by the person that is carrying out the sampling that may affect the results
systematic sampling and it’s disadvantages
-In systematic sampling the positions of the sampling points are chosen by the person carrying out the sampling
-There is a possibility that the person choosing could show bias towards or against certain areas
Individuals may deliberately place the quadrats in areas with the least species as these will be easier and quicker to count; this is unrepresentative of the whole area
when is random sampling the best choice
when a sampling area is reasonably uniform or has no clear pattern to the way the species are distributed
distribution of a species
describes how it is spread throughout the ecosystem
abundance of a species
the number of individuals of that species