CHROMOSOMAL STRUCTURE & MUTATION Flashcards

1
Q

The human genome consists of ______________________ of DNA organized into ________

A

2.9 billion nucleotide bp
23 chromosomes

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2
Q

As ______ organisms, humans inherit a ______ set of genes (23 chromosomes) from each parent, so humans have two copies of every gene (except for some on the _______ chromosomes).

A

diploid
haploid
X and Y

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3
Q

Each chromosome is a double helix of DNA:
*Chromosome 1 –
*Chromosome 2 –

A

the largest (246 million nucleotide bp)
the smallest (48 million nucleotide bp)

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4
Q

is carried on the chromosomes in the form of the order or sequence of nucleotides in the DNA helix.

A

Genetic information

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5
Q

is a trait or group of traits resulting from the transcription and translation of these genes.

A

phenotype

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6
Q

is the DNA nucleotide sequence responsible for a phenotype.

A

genotype

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7
Q

A DNA sequence change that is present in a relatively small proportion of a population is a

A

mutation

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8
Q

The more general term ______ may be used, particularly to describe inherited or somatic sequence alterations, reserving the term mutation for rarer, usually somatic changes, for example, changes found only in tumor tissue.

A

variant

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9
Q

A variant that is present in at least 1% to 2% of a population is considered a

A

polymorphism

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10
Q

Polymorphisms are casually considered _______ that do not severely affect phenotype.

A

mutations

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11
Q

1) ABO blood groups
2) Major Histocompatibility Complex 3) Polymorphisms for human identification and paternity testing

A

Examples of Benign Polymorphisms:

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12
Q

3 Categories of DNA Mutation:

A

Gene Mutations
Chromosome Mutations
Genome Mutations

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13
Q

DNA Mutation:

– affect single genes and are often, but not always, small changes in the DNA sequence.

A

Gene Mutations

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14
Q

DNA Mutation:

– affect the structures of entire chromosomes; the movement of large chromosomal regions either within the same chromosome or to another chromosome.

A

Chromosome Mutations

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15
Q

DNA Mutation:

– changes in the number of chromosomes.

A

Genome Mutations

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16
Q

3 CHROMOSOMAL ABNORMALITIES

A

Position effect
Aneuploid
Euploid

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17
Q

CHROMOSOMAL ABNORMALITy

– a cell or cell population with a normal complement of chromosomes.

A

Euploid

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18
Q

CHROMOSOMAL ABNORMALITy

– mostly observed as increased numbers of chromosomes or when there are more than two copies of one or more chromosomes.

A

Aneuploid

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19
Q

a disease resulting from aneuploidy, where there are three copies or trisomy of chromosome 21

A

Down syndrome

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20
Q

CHROMOSOMAL ABNORMALITy

– a phenomenon that a gene inserted or moved into a different chromosomal location may be expressed differently than it was in its original position.

A

Position effect

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21
Q

A eukaryotic chromosome is a .

A

double helix of DNA

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22
Q

➢An extended DNA double helix undergoes __________ compaction to make a metaphase chromosome.

A

8,000-fold

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23
Q

Approx. 160 to 180 bp of DNA are wrapped around a set of eight histone proteins (two each of ________________) to form a nucleosome.

A

H2a, H2b, H3, and H4

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24
Q

Nucleosomes are visible by electron microscopy as 100-Å beadlike structures that are separated by short (70–90 bp) strands of a free double helix or linker DNA. This _______________ arrangement comprises the 10-nm.

A

“bead-on-a-string”

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25
Q

The structure of metaphase chromosomes is maintained by more than just histones. Metaphase chromatin is

A

1/3 of DNA,
1/3 of histones,
and 1/3 of nonhistone proteins.

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26
Q

complexes termed condensin I and condensin II, maintain mitotic chromosome structure.

A

Nonhistone protein

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27
Q

Chromosomal Compaction and Histones
Interphase nucleus:
➢The 10-micron fiber is further coiled around histone H1 (or H5 in certain cells) into a thicker and shorter 30-nm or 30-micron fiber. The 30-nm interphase fibers represent the _______________ of DNA.

A

“resting state”

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28
Q

When the DNA is relaxed into 10-micron fibers for ______________, the placement of nucleosomes along the double helix can be detected using nucleases.

A

transcription or replication

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29
Q

The 30-nm interphase fibers are looped onto protein scaffolds to form 300-nm fibers before entry into the _________________________, and the looped fibers are wound into 700-nm solenoid coils.

A

M phase of the cell cycle (mitosis)

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30
Q

The 700-nm coils are compacted into the 1,400-nm fibers that can be seen microscopically in metaphase nuclei and as _____________ in laboratory testing.

A

karyotypes

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31
Q

In the 30-nm interphase chromatin fiber, the internucleosomal DNA is wound into a solenoid coil. Loss of this level of organization is the first classic indicator of

A

apoptosis, or programmed cell death.

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32
Q

– is the state of compaction of the DNA double helix that affectsgene activity

A

Chromosome topology

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33
Q

is less available for RNA transcription

A

Highly compacted DNA

34
Q

The more highly compacted state of DNA is _____________________________
in contrast to open chromatin, or euchromatin.

A

closed chromatin, or heterochromatin

35
Q

➢Repair of chromosomal breaks ➢Control chromosome condensation in eukaryotes and segregation in prokaryotes.
➢Integral parts of the condensin complex, a protein scaffold structure that can be isolated from both mitotic and interphase cells.

A

Structural Maintenance of Chromosome Proteins:

36
Q

Two SMC proteins:

A
  1. XCAP-C
  2. XCAP-E
37
Q

is the site of attachment of the chromosome to the spindle apparatus.

A

centromere

38
Q

The connection is made between microtubules of the spindle and a protein complex, the ____________, that assembles at the centromere sequences.

A

kinetochore

39
Q

At the nucleotide level, the centromere is composed of a set of

A

highly repetitive alpha satellite sequences.

40
Q

3 Classification of Chromosomes

A
  1. Metacentric
  2. Submetacentric
  3. Acrocentric & Telocentric
41
Q

Classification of Chromosomes

– arms are approximately equal in length

A

Metacentric

42
Q

Classification of Chromosomes

– one arm is longer than the other

A

Submetacentric

43
Q

Classification of Chromosomes

– one arm is extremely small or missing

A

Acrocentric & Telocentric

44
Q

Classification of Chromosomes

are considered acrocentric but may be classified as subtelocentric.

A

Chromosomes 13 to 15, 21, and 22

45
Q

Visualizing Chromosomes

➢ – cytological stains used to visualize chromosomes.

A

Feulgen, Wright, and hematoxylin

46
Q

Visualizing Chromosomes

– region-specific staining of chromosomes by the use of silver nitrate to stain specifically the constricted regions, or stalks on the acrocentric chromosomes.

A

Nucleolar organizing region (NOR) staining

47
Q

Visualizing Chromosomes

– stains chromosomes to detect mycoplasmal contamination in cell cultures; binds to the surface grooves of dsDNA and fluoresces blue under ultraviolet (UV) light (353-nm wavelength); also used to visualize chromosomes as well as whole nuclei.

A

4′,6-diamidino-2-phenylindole (DAPI)

48
Q

Chromosomal Banding Pattern

➢ give particularly intense staining of the human Y chromosome and are used to distinguish the Y chromosome in interphase nuclei.

A

Q bands

49
Q

Chromosomal Banding Pattern

Fluorescent dyes: quinacrine and quinacrine mustard result in __ banding visualized with fluorescence pattern.

A

Q

50
Q

Chromosomal Banding Pattern

– stained by chemical dye (Giemsa) similar to those seen in Q banding; also produced by Feulgen staining after treatment with DNase I.

A

G banding

51
Q

Chromosomal Banding Pattern

– pattern produced by harsher treatment of chromosomes (87°C for 10 min, then cooling to 70°C) before Giemsa staining which can also be visualized after staining with acridine orange.

A

R banding

52
Q

Chromosomal Banding Pattern

– Alkali treatment of chromosomes results in centromere staining

A

C banding

53
Q

4 Chromosomal Banding Pattern

A

Q, G, R, C banding

54
Q

Chromosomal Banding Pattern

➢__________ staining is absent in G-band patterns and may be associated with heterochromatin, the “quiet” or poorly transcribed sequences along the chromosomes that are also present around centromeres.

➢In contrast, ____________, which is relatively rich in gene activity, may not be stained as much as heterochromatin in C banding.

A

Centromere
euchromatin

55
Q

Chromosomal Banding Pattern

➢The correlation between heterochromatin and staining may also hold for

A

Noncentromeric G and Q bands.

56
Q

X Chromosome

➢The correlation of staining with heterochromatin is contradicted by observations of the X chromosome.
➢Although one X chromosome is inactive and replicates later than the active X in females, both X chromosomes stain with

A

equal pattern and intensity.

57
Q

1)DNA compaction
2)DNA sequences
3)DNA-associated nonhistone proteins.

A

Differential interactions of dye to X chromosome

58
Q

GENETIC MAPPING

➢______________ facilitates the detection of deletions, insertions, inversions, and other abnormalities and the identification of distinct chromosomal locations.

➢For this purpose, the reproducible G-banding pattern has been ordered into regions, comprising bands and sub-bands.

A

Chromosome banding

59
Q

Genetic Mapping: ‘CARBS’ meaning

A
  1. C – Chromosome Number
  2. A – Chromosome Arm
  3. R – Region
  4. B – Band
  5. S – Sub-band
60
Q

A ____________ is the complete set of chromosomes in a cell. Genome mutations or aneuploidy is detected by indirect method (flow cytometry) and more directly by karyotyping.

A

karyotype

61
Q

Karyotyping is the direct observation of __________ chromosome structure by arranging metaphase chromosomes according to size.

This requires collecting living cells and growing them in culture in the laboratory for

A

metaphase
48 to 72 hours.

62
Q

KARYOTYPING
1) Cell division is stimulated by addition of a _______, usually phytohemagglutinin.
2) Cell division are arrested in metaphase with ________, an inhibitor of microtubule (mitotic spindle) formation.
3) The chromosomes in dividing cells that arrest in metaphase will yield a chromosome spread when the cell nuclei are disrupted with hypotonic buffer.
4) The 23 pairs of chromosomes can then be assembled into an organized display, or karyotype, according to their size and centromere placement.
5) Aneuploidy may be observed affecting several or a single chromosome.

A

Mitogen
colcemid

63
Q

4 CHROMOSOMAL MUTATION

A

Balanced translocations
Unbalanced translocations
Robertsonian translocation
Reciprocal translocations

64
Q

– translocation results in no gain nor loss of chromosomal material, therefore, without phenotypic effects.

A

Balanced translocations

65
Q

– occur when chromosomes are not properly assorted during meiosis affecting the phenotype of offspring

A

Unbalanced translocations

66
Q

➢ – involves the movement of the long arm of an acrocentric chromosome to the centromere of another acrocentric chromosome.
(e.g. t(9;22) translocation known as Philadelphia chromosome)

A

Robertsonian translocation

67
Q

_____________ translocations in other diseases:
1. t(8;21) translocation in Chronic Myelogenous Leukemia 2. t(14;18) translocation in Follicular Lymphoma 3. t(15;17) translocation in Acute Promyelocytic Leukemia.

A

Reciprocal

68
Q

Chromosomal Abnormalities

➢_____ deletions covering millions of base pairs can be detected using karyotyping;
smaller microdeletions are not always easily seen using this technique.

A

Large

69
Q

Chromosomal Abnormalities

is a gain of chromosomal material. The inserted sequences arise from duplication of particular regions within the affected chromosome or from fragments of other chromosomes.

A

Insertion

70
Q

Chromosomal Abnormalities

result from excision, flipping, and reconnecting chromosomal material within the same chromosome.

A

Inversions

71
Q

Chromosomal Abnormalities

include the centromere in the inverted region, whereas paracentric inversions involve sequences within one arm of the chromosome.

A

Pericentric inversions

72
Q

Chromosomal Abnormalities.

is a metacentric chromosome that results from the transverse splitting of the centromere during cell division.

A

Isochromosome

73
Q

Chromosomal Abnormalities

causes two long arms or two short arms to separate into daughter cells instead of normal chromosomes with one long arm and one short arm.

A

Transverse splitting

74
Q

Chromosomal Abnormalities

results from the deletion of genetic regions from the ends of the chromosome and a joining of the ends to form a ring.

A

Ring chromosome

75
Q

Chromosomal Abnormalities

consists of translocated or otherwise rearranged parts from two or more unidentified chromosomes joined to a normal chromosome.

A

Derivative chromosome

76
Q

KARYOTYPING ANALYSES ➢Karyotyping analyses are expressed as the number of chromosomes per nucleus (normal is 46), the type of sex chromosomes (normal is XX or XY), followed by any genetic abnormalities observed.

➢A normal karyotype is _____ in a female or ______ in a male.

A

46,XX
46,XY

77
Q

A karyotype showing
46,XX,del(7)(q13) denotes a _________ in the long arm (q) of chromosome 7 at region 1, band 3.

A

deletion

78
Q

A karyotype showing
46,XY,t(5;17)(p13.3;p13) denotes a ____________ between the short arms p of chromosomes 5 and 17 and region 1, band 3, sub-band 3, and region 1, band 3, respectively.

A

translocation

79
Q

A karyotype showing 47,XX + 21 is the karyotype of a female with______________ resulting from an extra chromosome

A

Down syndrome

80
Q

_____________ syndrome is caused by an extra X chromosome in males, for example, 47,XXY.

A

Klinefelter