Chapter 9 Flashcards

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1
Q

What are the 2 different types of nucleic acids?

A

Deoxyribonucleic acid (DNA)
Ribonucleic acid (RNA)

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2
Q

Explain Griffiths Discovery.

A

Griffith injected heat-killed Type IIIS bacteria (virulent when alive) and living Type IIR bacteria (avirulent) into mice.

Many of the mice developed pneumonia and died, and living Type IIIS cells were recovered from their carcasses.

Something from the heat-killed cells—the “transforming principle”—had converted the living Type IIR cells into Type IIIS—that is, it had changed their hereditary material

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3
Q

Explain Avery, MacLeod, and McCartys experiment.

A

DNA purified from heat killed IIIS cells was treated with the enzymes DNase, which degrades DNA, RNase, which degrades RNA, and protease, which degrades proteins.

Only DNase eliminated the transforming activity entirely. (no IIIS colonies grew since DNA was not present)

Thus, DNA was the essential ingredient in the transformation of Type IIR cells into Type IIIS cells.

It was the “transforming principle.”

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4
Q

Explain Alfred Hershey and Martha Chases experiment.

A

DNA contains phosphorus but no sulfur, whereas proteins contain sulfur but virtually no phosphorus.

  1. T2 phage particles labeled with 35S were mixed with E. coli cells for a few minutes and the phage-infected cells were then subjected to shearing forces in a blender, most of the radioactivity (and thus the proteins) could be removed from the cells without affecting progeny phage production. Radioactivity was seen in the supernatant.
  2. When T2 particles in which the DNA was labeled with 32P were used, however, essentially all the radioactivity was found inside the cells; that is, the DNA was not subject to removal by shearing in a blender. The sheared-off phage coats were separated from the infected cells by low-speed centrifugation, which pellets (sediments) cells while leaving phage particles suspended. These results indicated that the DNA of the virus enters the host cell, whereas the protein coat remains outside the cell. Radioactivity was seen in the pellet.
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5
Q

What are supercoils and how are they formed?

A

Supercoils are introduced into a DNA
molecule when one or both strands are cleaved and when the complementary strands at one end are rotated or twisted around each other with the other end held fixed in space—and thus not allowed to spin.

This supercoiling causes a DNA molecule to collapse into a tightly coiled structure similar to a coiled electrical cord or twisted rubber band.

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6
Q

What type of coiling do all organisms display?

A

negative supercoiling

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7
Q

What does the chemical analysis of isolated chromatin show? (What does chromatin consist of?)

A

Chromatin consists primarily of:
1. DNA
2. Proteins
a. histones
b. nonhistone chromosomal proteins
3. RNA.

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8
Q

What are the five different types of histones found in humans? What are their ratios?

A

H1
H2a
H2b
H3
H4

Ratio: 1:2:2:2:2

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9
Q

Why are histones considered to be basic?

A

They contain 20 to 30 percent arginine and lysine, two positively charged amino acids.

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10
Q

What are DNA linkers?

A

The unprotected DNA double helix that connects adjacent nucleosomes.
It is suseptible to nuclease attacks.

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11
Q

What is a nucleosome core? What does it do?

A

The segment of DNA is associated with two molecules of histones H2a, H2b,
H3, and H4.

This octamer of histones protects the DNA from degradation by nucleases.

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12
Q

What does a complete chromatin subunit consist of?

A
  1. The nucleosome core
  2. The linker DNA
  3. The associated nonhistone chromosomal proteins
  4. All stabilized by the binding of one molecule of histone H1 to the outside of the structure
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13
Q

At what stage in mitosis are eukaryotic chromosomes maximally condensed?

A

metaphase of mitosis or meiosis

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14
Q

What does the tight packaging of chromosomes facilitate in mitosis? What does it help to prevent?

A

It facilitates their segregation into daughter nuclei during anaphase

It helps to prevent different chromosomes from becoming entangled and minimizing the possibility of breakage

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15
Q

What are the 3 levels of condensation needed to package eukaryotic DNA?

A
  1. Packaging DNA as a negative supercoil into nucleosomes, to produce the 11-nm diameter interphase chromatin fiber. This involves an octamer of histone molecules.
  2. An additional folding or supercoiling of the 11-nm nucleosome fiber, to produce the 30-nm chromatin fiber by using Histone H1.
  3. Nonhistone chromosomal proteins form a scaffold that is involved in condensing the 30-nm chromatin fiber into the tightly packed metaphase chromosomes. It involves the separation of segments of the DNA molecules into independently supercoiled domains or loops. The mechanism by which this third
    level of condensation occurs is not known.
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16
Q

What is CENP-A? What does it do?

A

A protein variant of histone H3

It binds to the centromeres of eukaryotes, even to the small centromeres of yeast.

It targets kinetochore formation

Facilitates left hand assembly

17
Q

What are the 3 important functions of telomeres?

A
  1. They prevent dioxyribonucleases from degrading the ends of linear DNA molecules
  2. They prevent fusion of the ends with other DNA molecules
  3. They facilitate the replication of these ends without the loss of material
18
Q

The telomeres of eukaryotic chromosomes have unique structures that include short nucleotide sequences present as tandem repeats. What is the most common human repeat?

A

TTAGGG

19
Q

What is the normal telomeric number of tandem repeats found in human somatic cells?

A

500 to 3000 TTAGGG repeats
(gradually shortens with age)

20
Q

What do telomeres terminate with?

A

G-rich single-stranded region in the DNA strand with a 3′ overhang end

21
Q

What are telomeres able to form? How is it accomplished? What is the point of it?

A

T-loops

The single strand at the 3′ terminus invades an upstream telomeric repeat (TTAGGG) and pairs with the complementary strand, displacing the equivalent strand.

The DNA in these t-loops is protected from degradation and/or modification by the shelterin complex.

22
Q

What is shelterin composed of?

A

TRF1
TRF2
TIN2
TPP1
POT1
RAP1

23
Q

How does shelterin work?

A

TRF1 and TRF2 (Telomere Repeat Factors) bind to double-stranded repeat sequences

POT1 (Protection Of Telomeres 1) binds to single-stranded repeat sequences.

Subunits TIN2 and TPP1 tether POT1 to DNA bound TRF1 and TRF2,

Rap1 helps regulate telomere length