Chapter 4 Flashcards

1
Q

What are cadherins?

A

Transmembrane proteins critical for segregation of cell types in the embryo.

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2
Q

How do cadherins control epithelial cells?

A

Epithelial cells are sorted by the type of cadherin proteins present in their cell membranes. Epithelial cells undergo EMT when E-cadherin gene expression is repressed.

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3
Q

Define the differences between juxtacrine, paracrine, and endocrine signalling.

A

Juxtacrine: Need to touch the target cell
Paracrine: Signalling proteins travel across gap between cells
Endocrine: Secreted signaling proteins are secreted into the bloodstream until they reach their target cells/tissues

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4
Q

How do E-cadherins, catenins, and actin work to bind cells together?

A

The five cadherin subunits (important: EC1 adhesive recog site, EC2 binds calcium) bind to catenins which are bound to actins inside the cell. One EC1 site can bind to another EC1 site and link two cells together.

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5
Q

Define induction.

A

The process by which one cell’s population influences the development of neighboring cells via interactions at a close range (juxta or para).

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6
Q

What is competence.

A

A cell population’s ability to respond to induction.

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7
Q

In lens development, what gene expression is required for a cell to be competent and thus induced to form the lens in mammals?

A

BMP4 expression: Sox2/3 transcription
FGF8 expression: L-Maf transcription
Pax 6 receptor expression and for FGF8 and BMP4 needed.

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8
Q

Are all inducer factors morphogens all of the time?

A

No. Not all inducer factors are morphogens and those that are in some cases are not acting as morphogens all the time. Induction can also occur through juxtacrine signalling.

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9
Q

What is a typical signalling pathway?

A

A receptor that can dimerize on contact with a ligand and self-phosphorylates, then acting as a kinase to phosphorylate a responding protein.

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10
Q

Name the steps in the RTK pathway.

A
  1. FGF binds to FGF receptor extracellularly, dimerizes into RTK in the membrane
  2. RTKs autophosphorylate, recruit GEF + GAP
  3. GEF + GAP act to phosphorylate Ras
  4. Ras activates Raf which phosphorylates MEK
  5. MEK phorphorylates ERK in the nucleus
  6. ERK phosphorylates the transcription factor which activates it and allows binding + transcription
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11
Q

Name the steps in the JAK-STAT pathway. What kind of signalling pathway is this?

A
  1. Prolactin (or FGF) binds
  2. Receptors dimerize
  3. JAKS autophosphorylate
  4. JAKs phosphorylate Stat5
  5. Stat5 dimerizes
  6. Stat5 dimer enters nucleus, regulates transcription

Classic RTK pathway.

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12
Q

What can a GOF mutaation in FgfR3 cause?

A

Dwarfism, kinase is activates too soon and produces too little cartilage b/c FGF through FGFR3 inhibits chondrocyte production, smaller bones if heterozygous (Achondroplasia), lethal if homozygous (thanatophoric dysplasia). A mutant receptor can be on all the time.

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13
Q

Name the key components of the hedgehog pathway.

A

Patched and smoothened form a complex, patched inhibits smoothened in the absence of hedgehog.
PKA is able to phosphorylate and cleave Ci, the cleaved halves migrate to the nucleus, no transcription occurs as the cleaved half blocks transcription.

In the presence of hedgehog, patched is inhibited and smoothened inhibits PKA and Slimb, Ci is freed uncleaved, migrates to nucleus and activates transcription.

Ci is Cubitus Interruptus, vertebrate homologs are GLI 1-3 proteins.

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14
Q

What is the main difference for the Hedgehog pathway in vertebrates?

A

The presence of primary cilium.

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15
Q

What can SHH inhibition cause?

A

Cyclopia. Development of embryo without a spinal column because SHH from the notochord is crucial to induce somites to form vertebrae.

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16
Q

What is Wnt4 necessary for?

A

Kidney development and female sex determination

17
Q

Describe the processes occurring in the canonical WNT pathway when ON and when OFF.

A

OFF: No Wnt. No R-spondin.
LGR inhibits formation of LRP5/6/Frizzled complex. Disheveled inactive. APC/GSK3/AXIN/B-catenin complex, GSK3 phosphorylates B-catenin. B-catenin released, ubiquitinated, destroyed, no signalling occurs.

ON: R-spondin binds to LGR, inhibits it. Wnt binds to Frizzled/LRP5/6 complex. Frizzled recruits disheveled. Disheveled recruits GSK3 and Axin. GSK3 can’t phospho B-catenin, travels to nucleus to bind to TCF to turn on transcription.

18
Q

Describe the steps of the planar cell polarity pathway.

A

ON: Wnt binds to frizzled and LRP5/6 complex which recruits disheveled or Ryk Ror which activates Rho GTPases (molecular switches related to RAS) which directly mediates cytoskeletal reorganization and also produces JNK which does the former as well as travel to the nucleus to activate transcription.

19
Q

What is required for planar cell polarity?

A

WNT signalling

20
Q

What is planar cell polarity?

A

Ordered asymmetry of cells within the plane of an epithelium.

21
Q

What SMADs do the two main TGF-B superfamilies use?

A

The BMPs use SMAD1,5 and the Nodal-like family uses SMAD2,3

22
Q

Descibe the steps of the SMAD pathway in both TGF-B superfamilies, generic and non-generic.

A

Generic:
TGF-B ligands bind to receptors, form a heterodimer. Autophosphorylates. Phosphorylates Smad, goes to nucleus to regulate transcript.

SPECIFIC:
BMP:
BMP ligand binds to receptors, form a heterodimer, autophosphorylates. Phosphorylates Smad1,5. Forms co-Smad with Smad4. Travels to nucleus, regs transcription.

Nodal-like:
Activin, Nodal, or TGF-B ligand binds to receptors, form a heterodimer, autophosphorylates. Phosphorylates Smad2,3. Forms co-Smad with Smad4. Travels to nucleus, regs transcription.

23
Q

Describe the basics of the Hippo pathway.

A

When inactive, angiomotin activates LATS1/2 which inhibits YAP/TAZ by phosphorylating it. Any that is created gets phosphorylated and retained or degraded.

When activated by mechanical stiffness/force, extracellular factors, or cell adhesion, LATS1/2 is inhibited, YAP/TAZ travels to the nucleus and activates TFs and TEAD1-4.

24
Q

Describe Juxtacrine signaling/Notch signaling. On and Off.

A

Two cells in contact form homophilic or heterophilic (Notch) binding through ligands on their surfaces. Delta-like (DLL1/3/4) and Jagged (JAG1/2) proteins.

Off: Protease associated with Notch. Notch doesn’t bind to signalling cell, repressor remains bound to CSL and promoter, no transcription occurs.

On: Delta binds to Notch extracellularly, intracellularly Protease associated with Notch cleaved NICD (Notch Intracellular Domain) which travels to the nucleus and binds with other TFS to initiate transcription and remove the repressor.