Chapter 10- genetic recombo Flashcards

1
Q

Evolution

A

A process by which populations undergo change through the natural selection of certain individuals in the population based on heritable traits

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2
Q

Asexual reproduction

A

A reproductive process that generates two identical daughter cells from a parental cell

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3
Q

Genetic recombination

A

Development of new combinations of genetic information to generate genetic variability

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4
Q

Scientists who used interrupted-mating experiments to map genes on the E. coli chromosome

A

Francois Jacob and Elie Wollman

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5
Q

Demonstrated transformation in bacteria

A

Fred Griffith

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6
Q

Demonstrated transduction in Salmonella typhimurium

A

Joshua Lederberg and Norton Zinder

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7
Q

Discoverer of the bacterium that helped lay the foundations for our understanding of recombination

A

Theodore Escherich

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8
Q

Proved that DNA is the transforming factor

A

Oswald Avery

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9
Q

Bacteriophages that follow a lytic life cycle

A

virulent phages

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10
Q

Bacteriophage that follows the lysogenic cycle

A

temperate phages

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11
Q

A tubelike structure that bacteria develop to connect one cell to another

A

sex pilus

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12
Q

The form of a temperate phage when it is incorporated into the host chromosome

A

a prophage

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13
Q

The state of bacteria after receiving DNA from another cell but before undergoing genetic recombination

A

partial diploid

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14
Q

Where a bacterium absorbs DNA released by other dead bacteria

A

transformation

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15
Q

Where a virus transfers DNA from one bacterium to another

A

transduction

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16
Q

Refers to determining the location of the genes on a chromosome

A

genetic map

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17
Q

Mutants that require additional nutrients added to the minimal medium .

A

auxotroph

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18
Q

Transformation

A
  • Bacteria take up pieces of DNA that are released into the environment as other cells disintegrate
  • Fred Griffith discovered when studying how bacteria cause pneumonia in mice
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19
Q

Transduction

A

-DNA is transferred from donor to recipient cells inside head of an infecting bacterial virus
o Bacteriophage = infection cycles of viruses that infect bacteria
-in general, transduction begins when new phages assemble in infected bacterial cell
-they sometimes incorporate fragments of host cell DNA along with (or instead of) viral DNA
-after the host cell is killed, new phages that are released may then attach to another cell and inject bacterial cell (and viral DNA if present) into that recipient cell
-the introduction of this DNA, as in conjugaton and transformation, makes the recipient cell a partial diploid and allows recombination to take place
-Recipients are NOT killed b/c they have received bacterial DNA and not infective viral DNA
o 2 types of transfuction: generalized and specialized

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20
Q

Generalized transduction

A

-generalized transduction, in which all donor genes equally likely to be transferred, is associated with some virulent bacteriophages, which kill their host cells during each cycle of infection (lytic cycle)
-During infection by virulent phage, host bacterial chromosome is degraded to provide raw material for synthesis of new phage chromosomes
-However, sometimes a fragment of host chromosome avoids degradation and is packed into head of new phage by mistake
-This phage now contains small random sample of bacterial instead of phage genes
-When host cell is burst to release new phage, this “transducing phage” can mechanically
infect recipient cell, however, it will deliver a linear piece of DNA from the donor cell rather than an infectious phage chromosome
-Newly infected (and incredibly lucky) recipient cell will survive; incoming DNA may then
pair, and recombine, with homologous regions on recipient chromo

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21
Q

Specialized transduction

A

-Phage lambda, one of most extensively studied bacteriophages, infects E. coli
- Lambda is a temperate bacteriophage—when it first infects new host, it determines whether
host likely to be a good one (is it starving? Suffering from DNA damage?)
-if host cell passes molecule health checkup, lambda chromosome lines up w/ small region of homology on bacterial chromosome and a phage-coded enzyme catalyzes a single recombination event. The phage is thus integrated into host chromosomal DNA, and in this state, is called a prophage (overall, mechanism is similar to integration of F factor discussed previously)
- the prophage is then replicated and passed to daughter cells along with rest of the bacterial chromosome as long as conditions remain favourable (lysogenic cycle)
- If host cell inhospitable (e.g. UV DNA damage), prophage activates several genes,
releases itself from chromosome by a recombination event, and proceeds to manufacture new
phage, which are released as cell bursts as a result of lytic growth
-in specialized transduction, the “mistake” occurs when the prophage is excised from chromosome
-Sometimes this recombination event is imprecise; bacterial DNA is removed from host chromosome, and some prophage DNA is left behind. As a result, this bacterial DNA is packaged into new phage and carried to recipient cells
-Since the transducing phage is defective (having left some genes behind in host), it does not kill its new host
*in case of specialized transduction, only bacterial genes close to integration site of phage
will ever be incorporated into phage chromosome by recombination mistake
· Typically, only genes coding for galactose and biotin metabolism are transferred
at high frequency by phage lambda

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22
Q

similarities between conjugation, transformation and transduction

A

all ways in which DNA from two different bacterial cells is brought into close proximity.

  • Homologous regions may then pair and recombine to give rise to a recipient cell that carriers a different collection alleles than it had previously.
  • Overall, these processes create more diversity in the DNA sequence among memers of a population than would arise by mutation and binary fission alone. More diversity leads to a higher likelihood that at least some individuals will be well suited to survive changes in the environment
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23
Q

Differentiate between a phage and a prophage

A

A bacteriophage is the infectious form of a virus whereas a prophage is the form when the phage DNA is integrated into the host’s chromosome.

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24
Q

Compare and contrast the type of transduction process of bacteriophage P22 with that of bacteriophage λ.

A

P22 encodes an enzyme that degrades the host DNA into short fragments which can become integrated in a random fashion when the phage particles assemble; in bacteriophage λ, the phage chromosome becomes integrated into a specific region of the host’s chromosome; when triggered to excise the phage may accidentally remove a host gene on either side of the prophage ( gal or bio)

25
Explain the basis of Down syndrome in humans
It is a condition that results from nondisjunction of chromosome 21 so that babies are born with 3 copies of this chromosome instead of 2
26
Discovered conjugation in bacteria
Joshua Lederberg and Edward Tatum
27
conjugation
cells contact each other by long tubular structure called sex pilus and then form cytoplasmic bridge - During conjugation, a copy of part of the DNA of one cell moves through the cytoplasmic bridge into other cell - Once DNA from once cell enters other, genetic recombination can occur - bacterial conjugation thus facilitates a kind of sexual reproduction in prokaryotes The F Factor and Conjugation -Conjugation is initiated by a bacterial cell that contains a small circle of DNA in addition to main circular chromosomal DNA - such small circles are called plasmids, and this particular one known as “fertility” plasmid or “the F factor” - like all plasmids, f factor carries several genes as well as a replication origin that permits a copy to be passed on to each daughter cell during usual process of bacterial cell division -this is an example of “vertical” inheritance from one generation to next o However, during conjugation, F factor also has ability to be copied and passed directly from one cell (the donor) to another (the recipient), this is an example of “horizontal” inheritance
28
Cells that contain the F factor are called
F+ cells
29
During meiosis and fertilization (sexually reproducing organisms), genetic variability arises from which four sources
(1) genetic recombination, (2) the differing combinations of maternal and paternal chromosomes segregated to the poles during anaphase I, (3) the differing combinations of recombinant chromatids segregated to the poles during anaphase II, and (4) the particular sets of male and female gametes that unite in fertilization
30
synaptonemal complex
a protein framework that holds together pairing homologous chromosomes,, which disassembles and disappears when the exchange of segments (producing new combos of alleles) is complete
31
crossovers/ chiasmata
regions in which non-sister chromatids cross one another
32
4 sources of genetic variability produced by meiosis
1- recombination (chromatids generate new combinations of alleles by physically exchanging segments- exchange process involves precise breakage and joining of DNA molecules. catalyzed by enzymes and occurs while the homologous chromosomes are held tightly together by S-complex. crossovers visible between chromosomes at late prophase I reflect the exchange of chromatid segments that occurred during the molecular steps of genetic recombination) 2- random segregation of homologous chromosomes (homologous pairs separate at anaphase I of meiosis, segregating random combinations of maternal and paternal chromosomes to the spindle poles. 3- random segregation of the chromatids of replicated chromosomes at meiosis II 4- random joining of male and female gametes in fertilization
33
transposable/mobile elements
DNA sequences that can move from place to place in the DNA. The TEs may move from one location in the DNA to another or generate duplicated copies that insert in new locations while leaving the “parent” copy in its original location
34
transposition
mechanism of movement of TEs. occurs at a low frequency in either of two ways, depending on the type of element: (1) a cut-and-paste process, in which the TE leaves its original location and transposes to a new location, and (2) a copy-and-paste process, in which a copy of a TE transposes to a new location, leaving the original TE behind
35
why are TEs important?
they produce mutations by transposing into genes and knocking out their functions, and they increase or decrease gene expression by transposing into regulatory sequences of genes. as such, TEs are biological mutagens that increase genetic variability
36
describe the connection between antibiotic resistance and transposons?
Many antibiotics, such as penicillin, erythromycin, tetracycline, ampicillin, and streptomycin, that were once successful in curing bacterial infections have lost much of their effectiveness because of resistance genes carried in transposons. Movements of the trans- posons, particularly to plasmids that can be transferred by conjugation within and between bacterial species, greatly increase the spread of genes, providing anti- biotic resistance to infecting cells. Resistance genes have made many bacterial diseases difficult or impossible to treat with standard antibiotics.
37
types of bacterial TEs
2 major types: insertion sequences (IS) and transposons.
38
types of eukaryotic TEs
transposons and retrotransposons
39
how many genes does the F factor carry
aprox 20, several encode proteins of the sex Pilus (or F Pilus)
40
tetrads
fully paired homologues
41
Which phase (diploid or haploid) dominates the life cycles of animals, plants, and fungi?
animals: diploid dominates plants: alternate between haploid and diploid generations in which depending on the organism, either generation may dominate the life cycle fungi: haploid dominates
42
compare bacterial transposons and eukaryotic transposons
Eukaryotic transposons are similar to bacterial transposons in their general structure and in the ways they transpose. However, members of the other class of eukaryotic TEs, the retrotrans- posons, transpose by a copy-and-paste mechanism that is unlike any of the other TEs
43
discuss similarities/differences in retrotransposons and retroviruses
``` The RNA to DNA reverse transcription associated with retrotransposon movement is strikingly similar to that employed by a class of eukaryotic viruses called retro- viruses. When a retrovirus infects a host cell, a reverse transcriptase carried in the virus particle is released and copies the single-stranded RNA genome into a double- stranded DNA copy. The viral DNA is then inserted into the host DNA (by genetic recombination), where it is replicated and passed to progeny cells during cell divi- sion. Similar to the prophage of bacteria, the inserted viral DNA is known as a provirus -in total, retrotransposons and retroviruses of all types occupy some 40% of the human genome ```
44
HFR cells
high frequency recombination - can ''export'' copies of chromosomal genes to another cell. In hfr cells, the origin of transfer is near the middle of the integrated F factor, as a result, only half of the F factor DNA is transferred at the front of the chromosomal DNA most likely, recipient will be partial diploid
45
CONTRAST THE CHARACTERISTICS OF F-, F+, AND Hfr CELLS
F- IS THE RECIPIENT CELL WHILE F+ IS THE DONOR CELL. BETWEEN THESE TWO CELLS, NO GENETIC RECOMBINATION OCCURS. THE Hfr CELL IS A SPECIAL DONOR CELL THAT CAN TRANSFER GENES ON A BACTERIAL CHROMOSOME TO A RECIPIENT BACTERIUM (BECAUSE THE F FACTOR IS INCORPORATED INTO THE SINGLE BACTERIAL CHROMOSOME)
46
Q-EXPLAIN WHY ALL GENES HAVE AN EQUAL LIKELIHOOD OF TRANSFER BY GENERALIZED TRANSDUCTION BUT NOT BY SPECIALIZED TRANSDUCTION
SINCE GENERALIZED TRANSDUCTION TRANSFERS RANDOM FRAGMENTS OF THE HOST CHROMOSOME, ALL HOST GENES ARE TRANSFERRED AT EQUAL FREQUENCY. SPECIALIZED TRANSDUCTION ONLY TRANSFERS GENES LYING CLOSE TO THE POINT OF INSERTION OF THE PROPHAGE
47
T/F meiosis makes gametes in plants
F- only in animals In house plants/fungi - the haploid products are spores
48
essence of ''difference'' in meiosis
two kinds of difference: halved chromosome number and recombined chromosomal DNA sequence.
49
essence of ''sameness'' in meiosis
chromosomes are replicated and partitioned to ensure that cells produced by the process have the same number of chromosomes, with the same DNA sequence, as the cell that began the process. In this way, somatic cells are produced for most of the requirements of multicellular bodies
50
explain why meiosis results in a reduction of genetic material.
Genetic material is cut in half through the process of meiosis since once the male gamete meets with the female gamete they can form a diploid cell and share each half of the chromosome.
51
meiocytes
cells that are destined to divide by meiosis
52
paternal chromosome
derived from the male parent of the organism
53
maternal chromosome
derived from the female parent of the organism
54
explain why meiosis results in genetic recombination
since the chromosomes that were homologous were brought into close proximity so that the DNA is able to be exchanged between the similar regions on the chromosome.
55
alleles
Genetically distinct versions of the same gene
56
what is interkinesis?
It is the brief interlude between meiosis I and II during which no DNA replication occurs
57
What is the relationship between synapsis and tetrads?
Tetrads are the homologous pairs of sister chromatids which form through the process of synapsis
58
T/F -Nondisjunction is a common problem in meiosis.
F – it is a rare event and generally zygotes that form from cells that have suffered nondisjunction rarely survive;
59
T/F-During gamete formation in humans, the X and Y chromosomes behave as homologues.
true